Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G19940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0015805: S-adenosyl-L-methionine transport0.00E+00
6GO:0010394: homogalacturonan metabolic process0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0042371: vitamin K biosynthetic process0.00E+00
9GO:1905499: trichome papilla formation0.00E+00
10GO:0006412: translation6.28E-14
11GO:0032544: plastid translation4.79E-10
12GO:0042254: ribosome biogenesis1.17E-09
13GO:0006633: fatty acid biosynthetic process1.86E-09
14GO:0010207: photosystem II assembly9.47E-07
15GO:0042335: cuticle development8.16E-06
16GO:0010027: thylakoid membrane organization3.22E-05
17GO:0006183: GTP biosynthetic process4.12E-05
18GO:0010025: wax biosynthetic process5.94E-05
19GO:0010236: plastoquinone biosynthetic process6.58E-05
20GO:0009735: response to cytokinin1.23E-04
21GO:0042372: phylloquinone biosynthetic process1.32E-04
22GO:0017148: negative regulation of translation1.32E-04
23GO:0071588: hydrogen peroxide mediated signaling pathway2.43E-04
24GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.43E-04
25GO:0060627: regulation of vesicle-mediated transport2.43E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process2.43E-04
27GO:0010442: guard cell morphogenesis2.43E-04
28GO:1904964: positive regulation of phytol biosynthetic process2.43E-04
29GO:0045488: pectin metabolic process2.43E-04
30GO:1902458: positive regulation of stomatal opening2.43E-04
31GO:0009658: chloroplast organization3.46E-04
32GO:0015995: chlorophyll biosynthetic process5.26E-04
33GO:0043085: positive regulation of catalytic activity5.33E-04
34GO:1903426: regulation of reactive oxygen species biosynthetic process5.39E-04
35GO:0052541: plant-type cell wall cellulose metabolic process5.39E-04
36GO:0010115: regulation of abscisic acid biosynthetic process5.39E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process5.39E-04
38GO:0006423: cysteinyl-tRNA aminoacylation5.39E-04
39GO:0006729: tetrahydrobiopterin biosynthetic process5.39E-04
40GO:0030036: actin cytoskeleton organization6.91E-04
41GO:0007568: aging7.19E-04
42GO:0090391: granum assembly8.75E-04
43GO:0010581: regulation of starch biosynthetic process8.75E-04
44GO:0015840: urea transport8.75E-04
45GO:0045793: positive regulation of cell size8.75E-04
46GO:2001295: malonyl-CoA biosynthetic process8.75E-04
47GO:0006833: water transport9.63E-04
48GO:0006631: fatty acid metabolic process9.99E-04
49GO:0006166: purine ribonucleoside salvage1.25E-03
50GO:0071484: cellular response to light intensity1.25E-03
51GO:0051085: chaperone mediated protein folding requiring cofactor1.25E-03
52GO:0051639: actin filament network formation1.25E-03
53GO:0006241: CTP biosynthetic process1.25E-03
54GO:0043481: anthocyanin accumulation in tissues in response to UV light1.25E-03
55GO:0046739: transport of virus in multicellular host1.25E-03
56GO:0051016: barbed-end actin filament capping1.25E-03
57GO:0006165: nucleoside diphosphate phosphorylation1.25E-03
58GO:0006168: adenine salvage1.25E-03
59GO:0006228: UTP biosynthetic process1.25E-03
60GO:0006986: response to unfolded protein1.25E-03
61GO:0055070: copper ion homeostasis1.25E-03
62GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.25E-03
63GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.53E-03
64GO:0009411: response to UV1.53E-03
65GO:0015689: molybdate ion transport1.67E-03
66GO:0051764: actin crosslink formation1.67E-03
67GO:0006085: acetyl-CoA biosynthetic process1.67E-03
68GO:0044206: UMP salvage1.67E-03
69GO:0009956: radial pattern formation1.67E-03
70GO:0000413: protein peptidyl-prolyl isomerization1.94E-03
71GO:0044209: AMP salvage2.13E-03
72GO:0006665: sphingolipid metabolic process2.13E-03
73GO:0048359: mucilage metabolic process involved in seed coat development2.13E-03
74GO:0045038: protein import into chloroplast thylakoid membrane2.13E-03
75GO:0043097: pyrimidine nucleoside salvage2.13E-03
76GO:0042549: photosystem II stabilization2.62E-03
77GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.62E-03
78GO:0006206: pyrimidine nucleobase metabolic process2.62E-03
79GO:0035435: phosphate ion transmembrane transport2.62E-03
80GO:0032502: developmental process2.75E-03
81GO:0009828: plant-type cell wall loosening3.11E-03
82GO:0009955: adaxial/abaxial pattern specification3.15E-03
83GO:0006694: steroid biosynthetic process3.15E-03
84GO:1901259: chloroplast rRNA processing3.15E-03
85GO:0010189: vitamin E biosynthetic process3.15E-03
86GO:0009854: oxidative photosynthetic carbon pathway3.15E-03
87GO:0010019: chloroplast-nucleus signaling pathway3.15E-03
88GO:0009610: response to symbiotic fungus3.72E-03
89GO:0045995: regulation of embryonic development3.72E-03
90GO:0009772: photosynthetic electron transport in photosystem II3.72E-03
91GO:0051693: actin filament capping3.72E-03
92GO:0030497: fatty acid elongation3.72E-03
93GO:0010196: nonphotochemical quenching3.72E-03
94GO:0006869: lipid transport3.74E-03
95GO:0048564: photosystem I assembly4.31E-03
96GO:0006605: protein targeting4.31E-03
97GO:0042255: ribosome assembly4.31E-03
98GO:0006353: DNA-templated transcription, termination4.31E-03
99GO:2000070: regulation of response to water deprivation4.31E-03
100GO:0045010: actin nucleation4.31E-03
101GO:0006629: lipid metabolic process4.47E-03
102GO:0009817: defense response to fungus, incompatible interaction4.83E-03
103GO:0009932: cell tip growth4.93E-03
104GO:0015996: chlorophyll catabolic process4.93E-03
105GO:0019430: removal of superoxide radicals4.93E-03
106GO:0007186: G-protein coupled receptor signaling pathway4.93E-03
107GO:0010497: plasmodesmata-mediated intercellular transport4.93E-03
108GO:0009808: lignin metabolic process4.93E-03
109GO:0010206: photosystem II repair5.59E-03
110GO:0000902: cell morphogenesis5.59E-03
111GO:0015780: nucleotide-sugar transport5.59E-03
112GO:0010205: photoinhibition6.27E-03
113GO:0043067: regulation of programmed cell death6.27E-03
114GO:0042761: very long-chain fatty acid biosynthetic process6.27E-03
115GO:0010380: regulation of chlorophyll biosynthetic process6.27E-03
116GO:0034599: cellular response to oxidative stress6.41E-03
117GO:0055114: oxidation-reduction process6.71E-03
118GO:0006949: syncytium formation6.99E-03
119GO:0006535: cysteine biosynthetic process from serine6.99E-03
120GO:0043069: negative regulation of programmed cell death6.99E-03
121GO:0045036: protein targeting to chloroplast6.99E-03
122GO:0010015: root morphogenesis7.73E-03
123GO:0000038: very long-chain fatty acid metabolic process7.73E-03
124GO:0018119: peptidyl-cysteine S-nitrosylation7.73E-03
125GO:0009826: unidimensional cell growth8.35E-03
126GO:0045037: protein import into chloroplast stroma8.49E-03
127GO:0006006: glucose metabolic process9.29E-03
128GO:0071555: cell wall organization9.55E-03
129GO:0042538: hyperosmotic salinity response9.93E-03
130GO:0009664: plant-type cell wall organization9.93E-03
131GO:0010143: cutin biosynthetic process1.01E-02
132GO:0010020: chloroplast fission1.01E-02
133GO:0007015: actin filament organization1.01E-02
134GO:0009933: meristem structural organization1.01E-02
135GO:0019253: reductive pentose-phosphate cycle1.01E-02
136GO:0046688: response to copper ion1.10E-02
137GO:0006636: unsaturated fatty acid biosynthetic process1.18E-02
138GO:0006071: glycerol metabolic process1.18E-02
139GO:0006096: glycolytic process1.26E-02
140GO:0019344: cysteine biosynthetic process1.27E-02
141GO:0009116: nucleoside metabolic process1.27E-02
142GO:0000027: ribosomal large subunit assembly1.27E-02
143GO:0051017: actin filament bundle assembly1.27E-02
144GO:0005992: trehalose biosynthetic process1.27E-02
145GO:0015979: photosynthesis1.37E-02
146GO:0010026: trichome differentiation1.37E-02
147GO:0007017: microtubule-based process1.37E-02
148GO:0045454: cell redox homeostasis1.45E-02
149GO:0061077: chaperone-mediated protein folding1.46E-02
150GO:0031408: oxylipin biosynthetic process1.46E-02
151GO:0030245: cellulose catabolic process1.56E-02
152GO:0006457: protein folding1.58E-02
153GO:0009409: response to cold1.61E-02
154GO:0040007: growth1.66E-02
155GO:0010091: trichome branching1.76E-02
156GO:0009306: protein secretion1.76E-02
157GO:0016117: carotenoid biosynthetic process1.86E-02
158GO:0008033: tRNA processing1.97E-02
159GO:0034220: ion transmembrane transport1.97E-02
160GO:0045489: pectin biosynthetic process2.07E-02
161GO:0006662: glycerol ether metabolic process2.07E-02
162GO:0010305: leaf vascular tissue pattern formation2.07E-02
163GO:0010197: polar nucleus fusion2.07E-02
164GO:0010182: sugar mediated signaling pathway2.07E-02
165GO:0042744: hydrogen peroxide catabolic process2.17E-02
166GO:0007018: microtubule-based movement2.18E-02
167GO:0009790: embryo development2.23E-02
168GO:0019252: starch biosynthetic process2.29E-02
169GO:0000302: response to reactive oxygen species2.41E-02
170GO:0002229: defense response to oomycetes2.41E-02
171GO:0016132: brassinosteroid biosynthetic process2.41E-02
172GO:0010583: response to cyclopentenone2.52E-02
173GO:0010090: trichome morphogenesis2.64E-02
174GO:0009567: double fertilization forming a zygote and endosperm2.76E-02
175GO:0016126: sterol biosynthetic process3.13E-02
176GO:0009911: positive regulation of flower development3.13E-02
177GO:0010411: xyloglucan metabolic process3.52E-02
178GO:0018298: protein-chromophore linkage3.78E-02
179GO:0009416: response to light stimulus3.87E-02
180GO:0009813: flavonoid biosynthetic process3.92E-02
181GO:0009834: plant-type secondary cell wall biogenesis4.05E-02
182GO:0009631: cold acclimation4.19E-02
183GO:0009853: photorespiration4.48E-02
184GO:0006839: mitochondrial transport4.91E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
6GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
9GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
15GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
16GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
17GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
18GO:0019843: rRNA binding2.68E-19
19GO:0003735: structural constituent of ribosome5.48E-15
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.85E-07
21GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity2.75E-06
22GO:0043023: ribosomal large subunit binding2.27E-05
23GO:0009922: fatty acid elongase activity6.58E-05
24GO:0005528: FK506 binding7.01E-05
25GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.43E-04
26GO:0004560: alpha-L-fucosidase activity2.43E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.43E-04
28GO:0080132: fatty acid alpha-hydroxylase activity2.43E-04
29GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.43E-04
30GO:0015200: methylammonium transmembrane transporter activity2.43E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.43E-04
32GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.43E-04
33GO:0008047: enzyme activator activity4.61E-04
34GO:0003938: IMP dehydrogenase activity5.39E-04
35GO:0004817: cysteine-tRNA ligase activity5.39E-04
36GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.39E-04
37GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.39E-04
38GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity8.75E-04
39GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity8.75E-04
40GO:0005504: fatty acid binding8.75E-04
41GO:0004148: dihydrolipoyl dehydrogenase activity8.75E-04
42GO:0004075: biotin carboxylase activity8.75E-04
43GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.75E-04
44GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity8.75E-04
45GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.25E-03
46GO:0003878: ATP citrate synthase activity1.25E-03
47GO:0003999: adenine phosphoribosyltransferase activity1.25E-03
48GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.25E-03
49GO:0004550: nucleoside diphosphate kinase activity1.25E-03
50GO:0016851: magnesium chelatase activity1.25E-03
51GO:0008097: 5S rRNA binding1.25E-03
52GO:0004845: uracil phosphoribosyltransferase activity1.67E-03
53GO:0016836: hydro-lyase activity1.67E-03
54GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.67E-03
55GO:0045430: chalcone isomerase activity1.67E-03
56GO:0052793: pectin acetylesterase activity1.67E-03
57GO:0004506: squalene monooxygenase activity1.67E-03
58GO:0015098: molybdate ion transmembrane transporter activity1.67E-03
59GO:0043495: protein anchor1.67E-03
60GO:0015204: urea transmembrane transporter activity1.67E-03
61GO:0004659: prenyltransferase activity1.67E-03
62GO:0004040: amidase activity2.13E-03
63GO:0003989: acetyl-CoA carboxylase activity2.13E-03
64GO:0004791: thioredoxin-disulfide reductase activity2.24E-03
65GO:0016208: AMP binding2.62E-03
66GO:0004130: cytochrome-c peroxidase activity2.62E-03
67GO:0016688: L-ascorbate peroxidase activity2.62E-03
68GO:0008519: ammonium transmembrane transporter activity2.62E-03
69GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.93E-03
70GO:0051015: actin filament binding2.93E-03
71GO:0004124: cysteine synthase activity3.15E-03
72GO:0051920: peroxiredoxin activity3.15E-03
73GO:0004849: uridine kinase activity3.15E-03
74GO:0015631: tubulin binding3.15E-03
75GO:0102391: decanoate--CoA ligase activity3.15E-03
76GO:0016722: oxidoreductase activity, oxidizing metal ions3.31E-03
77GO:0015250: water channel activity3.71E-03
78GO:0019899: enzyme binding3.72E-03
79GO:0004467: long-chain fatty acid-CoA ligase activity3.72E-03
80GO:0016209: antioxidant activity4.31E-03
81GO:0003924: GTPase activity4.47E-03
82GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.53E-03
83GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.83E-03
84GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.93E-03
85GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors5.59E-03
86GO:0008889: glycerophosphodiester phosphodiesterase activity5.59E-03
87GO:0047617: acyl-CoA hydrolase activity6.27E-03
88GO:0005525: GTP binding6.65E-03
89GO:0042802: identical protein binding6.82E-03
90GO:0004805: trehalose-phosphatase activity6.99E-03
91GO:0008289: lipid binding7.39E-03
92GO:0015114: phosphate ion transmembrane transporter activity9.29E-03
93GO:0008081: phosphoric diester hydrolase activity9.29E-03
94GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.01E-02
95GO:0008266: poly(U) RNA binding1.01E-02
96GO:0003690: double-stranded DNA binding1.10E-02
97GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.18E-02
98GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.18E-02
99GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.18E-02
100GO:0051087: chaperone binding1.37E-02
101GO:0004707: MAP kinase activity1.46E-02
102GO:0016491: oxidoreductase activity1.54E-02
103GO:0022891: substrate-specific transmembrane transporter activity1.66E-02
104GO:0030570: pectate lyase activity1.66E-02
105GO:0008810: cellulase activity1.66E-02
106GO:0008514: organic anion transmembrane transporter activity1.76E-02
107GO:0003727: single-stranded RNA binding1.76E-02
108GO:0005507: copper ion binding1.82E-02
109GO:0047134: protein-disulfide reductase activity1.86E-02
110GO:0008080: N-acetyltransferase activity2.07E-02
111GO:0016762: xyloglucan:xyloglucosyl transferase activity2.41E-02
112GO:0005200: structural constituent of cytoskeleton2.88E-02
113GO:0016168: chlorophyll binding3.26E-02
114GO:0016798: hydrolase activity, acting on glycosyl bonds3.52E-02
115GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.65E-02
116GO:0016788: hydrolase activity, acting on ester bonds4.15E-02
117GO:0030145: manganese ion binding4.19E-02
118GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.19E-02
119GO:0003746: translation elongation factor activity4.48E-02
120GO:0050660: flavin adenine dinucleotide binding4.70E-02
121GO:0050661: NADP binding4.91E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009570: chloroplast stroma3.89E-44
3GO:0009507: chloroplast4.17E-36
4GO:0009941: chloroplast envelope1.12E-32
5GO:0009579: thylakoid2.07E-24
6GO:0005840: ribosome3.01E-15
7GO:0009534: chloroplast thylakoid1.28E-13
8GO:0009543: chloroplast thylakoid lumen7.28E-13
9GO:0009535: chloroplast thylakoid membrane2.20E-12
10GO:0031977: thylakoid lumen7.05E-12
11GO:0046658: anchored component of plasma membrane1.84E-07
12GO:0009505: plant-type cell wall3.37E-07
13GO:0009536: plastid1.63E-05
14GO:0031225: anchored component of membrane1.75E-05
15GO:0000311: plastid large ribosomal subunit2.75E-05
16GO:0016020: membrane3.18E-05
17GO:0030095: chloroplast photosystem II4.16E-05
18GO:0042651: thylakoid membrane8.17E-05
19GO:0048046: apoplast2.08E-04
20GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.43E-04
21GO:0009515: granal stacked thylakoid2.43E-04
22GO:0009923: fatty acid elongase complex2.43E-04
23GO:0009547: plastid ribosome2.43E-04
24GO:0005884: actin filament5.33E-04
25GO:0008290: F-actin capping protein complex5.39E-04
26GO:0022626: cytosolic ribosome6.45E-04
27GO:0005618: cell wall8.19E-04
28GO:0009528: plastid inner membrane8.75E-04
29GO:0010007: magnesium chelatase complex8.75E-04
30GO:0009509: chromoplast8.75E-04
31GO:0009654: photosystem II oxygen evolving complex1.17E-03
32GO:0032432: actin filament bundle1.25E-03
33GO:0009346: citrate lyase complex1.25E-03
34GO:0015935: small ribosomal subunit1.28E-03
35GO:0009532: plastid stroma1.28E-03
36GO:0009527: plastid outer membrane1.67E-03
37GO:0055035: plastid thylakoid membrane2.13E-03
38GO:0019898: extrinsic component of membrane2.40E-03
39GO:0031969: chloroplast membrane2.47E-03
40GO:0031209: SCAR complex2.62E-03
41GO:0010319: stromule3.31E-03
42GO:0042807: central vacuole3.72E-03
43GO:0009506: plasmodesma4.34E-03
44GO:0009707: chloroplast outer membrane4.83E-03
45GO:0000326: protein storage vacuole4.93E-03
46GO:0045298: tubulin complex5.59E-03
47GO:0015934: large ribosomal subunit5.59E-03
48GO:0005763: mitochondrial small ribosomal subunit5.59E-03
49GO:0005802: trans-Golgi network6.35E-03
50GO:0005768: endosome7.95E-03
51GO:0000312: plastid small ribosomal subunit1.01E-02
52GO:0005874: microtubule1.10E-02
53GO:0005871: kinesin complex1.86E-02
54GO:0009523: photosystem II2.29E-02
55GO:0005576: extracellular region2.31E-02
56GO:0005778: peroxisomal membrane2.88E-02
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Gene type



Gene DE type