co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G17972

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0006223: uracil salvage	0.00E+00
8	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
9	GO:0016553: base conversion or substitution editing	0.00E+00
10	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
11	GO:0006399: tRNA metabolic process	0.00E+00
12	GO:0015979: photosynthesis	3.85E-15
13	GO:0006412: translation	3.22E-13
14	GO:0032544: plastid translation	3.74E-12
15	GO:0042254: ribosome biogenesis	5.75E-12
16	GO:0009773: photosynthetic electron transport in photosystem I	5.21E-11
17	GO:0009735: response to cytokinin	2.09E-10
18	GO:0010207: photosystem II assembly	2.24E-10
19	GO:0010027: thylakoid membrane organization	1.92E-06
20	GO:0090391: granum assembly	1.21E-05
21	GO:0055070: copper ion homeostasis	2.72E-05
22	GO:0015995: chlorophyll biosynthetic process	5.89E-05
23	GO:0009658: chloroplast organization	7.21E-05
24	GO:0032543: mitochondrial translation	7.79E-05
25	GO:0010236: plastoquinone biosynthetic process	7.79E-05
26	GO:0010190: cytochrome b6f complex assembly	1.13E-04
27	GO:0042549: photosystem II stabilization	1.13E-04
28	GO:0009772: photosynthetic electron transport in photosystem II	2.04E-04
29	GO:0010196: nonphotochemical quenching	2.04E-04
30	GO:0071588: hydrogen peroxide mediated signaling pathway	2.70E-04
31	GO:0043489: RNA stabilization	2.70E-04
32	GO:1904966: positive regulation of vitamin E biosynthetic process	2.70E-04
33	GO:0000481: maturation of 5S rRNA	2.70E-04
34	GO:1904964: positive regulation of phytol biosynthetic process	2.70E-04
35	GO:0042371: vitamin K biosynthetic process	2.70E-04
36	GO:1902458: positive regulation of stomatal opening	2.70E-04
37	GO:0034337: RNA folding	2.70E-04
38	GO:0071482: cellular response to light stimulus	3.19E-04
39	GO:0009657: plastid organization	3.19E-04
40	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.94E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.94E-04
42	GO:0034755: iron ion transmembrane transport	5.94E-04
43	GO:0009662: etioplast organization	5.94E-04
44	GO:0006729: tetrahydrobiopterin biosynthetic process	5.94E-04
45	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.94E-04
46	GO:0043085: positive regulation of catalytic activity	6.14E-04
47	GO:0006352: DNA-templated transcription, initiation	6.14E-04
48	GO:0009767: photosynthetic electron transport chain	7.96E-04
49	GO:0006006: glucose metabolic process	7.96E-04
50	GO:0019253: reductive pentose-phosphate cycle	8.95E-04
51	GO:0006000: fructose metabolic process	9.62E-04
52	GO:0010581: regulation of starch biosynthetic process	9.62E-04
53	GO:0006518: peptide metabolic process	9.62E-04
54	GO:0051604: protein maturation	9.62E-04
55	GO:0071492: cellular response to UV-A	9.62E-04
56	GO:0006418: tRNA aminoacylation for protein translation	1.35E-03
57	GO:0071484: cellular response to light intensity	1.38E-03
58	GO:0051639: actin filament network formation	1.38E-03
59	GO:0006241: CTP biosynthetic process	1.38E-03
60	GO:0006165: nucleoside diphosphate phosphorylation	1.38E-03
61	GO:0006228: UTP biosynthetic process	1.38E-03
62	GO:0006424: glutamyl-tRNA aminoacylation	1.38E-03
63	GO:1901332: negative regulation of lateral root development	1.38E-03
64	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.38E-03
65	GO:2001141: regulation of RNA biosynthetic process	1.38E-03
66	GO:0009411: response to UV	1.76E-03
67	GO:0071486: cellular response to high light intensity	1.84E-03
68	GO:0051764: actin crosslink formation	1.84E-03
69	GO:0006183: GTP biosynthetic process	1.84E-03
70	GO:0045727: positive regulation of translation	1.84E-03
71	GO:0044206: UMP salvage	1.84E-03
72	GO:0071483: cellular response to blue light	1.84E-03
73	GO:0000413: protein peptidyl-prolyl isomerization	2.24E-03
74	GO:0000304: response to singlet oxygen	2.35E-03
75	GO:0043097: pyrimidine nucleoside salvage	2.35E-03
76	GO:0006564: L-serine biosynthetic process	2.35E-03
77	GO:0045038: protein import into chloroplast thylakoid membrane	2.35E-03
78	GO:0031365: N-terminal protein amino acid modification	2.35E-03
79	GO:0035434: copper ion transmembrane transport	2.35E-03
80	GO:0006461: protein complex assembly	2.35E-03
81	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.90E-03
82	GO:0006206: pyrimidine nucleobase metabolic process	2.90E-03
83	GO:0032502: developmental process	3.18E-03
84	GO:0042372: phylloquinone biosynthetic process	3.49E-03
85	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.49E-03
86	GO:0017148: negative regulation of translation	3.49E-03
87	GO:0030488: tRNA methylation	3.49E-03
88	GO:0010189: vitamin E biosynthetic process	3.49E-03
89	GO:0009854: oxidative photosynthetic carbon pathway	3.49E-03
90	GO:0010019: chloroplast-nucleus signaling pathway	3.49E-03
91	GO:0006400: tRNA modification	4.12E-03
92	GO:0048564: photosystem I assembly	4.77E-03
93	GO:0042255: ribosome assembly	4.77E-03
94	GO:0006353: DNA-templated transcription, termination	4.77E-03
95	GO:0006605: protein targeting	4.77E-03
96	GO:0032508: DNA duplex unwinding	4.77E-03
97	GO:2000070: regulation of response to water deprivation	4.77E-03
98	GO:0045010: actin nucleation	4.77E-03
99	GO:0010492: maintenance of shoot apical meristem identity	4.77E-03
100	GO:0009790: embryo development	4.91E-03
101	GO:0006002: fructose 6-phosphate metabolic process	5.47E-03
102	GO:0015996: chlorophyll catabolic process	5.47E-03
103	GO:0007186: G-protein coupled receptor signaling pathway	5.47E-03
104	GO:0019430: removal of superoxide radicals	5.47E-03
105	GO:0017004: cytochrome complex assembly	5.47E-03
106	GO:0018298: protein-chromophore linkage	5.61E-03
107	GO:0009051: pentose-phosphate shunt, oxidative branch	6.20E-03
108	GO:0010206: photosystem II repair	6.20E-03
109	GO:0048507: meristem development	6.20E-03
110	GO:0009631: cold acclimation	6.49E-03
111	GO:0009409: response to cold	6.91E-03
112	GO:0010380: regulation of chlorophyll biosynthetic process	6.96E-03
113	GO:0009793: embryo development ending in seed dormancy	7.04E-03
114	GO:0009637: response to blue light	7.11E-03
115	GO:0034599: cellular response to oxidative stress	7.44E-03
116	GO:0030001: metal ion transport	8.11E-03
117	GO:0009073: aromatic amino acid family biosynthetic process	8.58E-03
118	GO:0006879: cellular iron ion homeostasis	8.58E-03
119	GO:0018119: peptidyl-cysteine S-nitrosylation	8.58E-03
120	GO:0010114: response to red light	9.18E-03
121	GO:0045037: protein import into chloroplast stroma	9.44E-03
122	GO:0005986: sucrose biosynthetic process	1.03E-02
123	GO:0010628: positive regulation of gene expression	1.03E-02
124	GO:0030036: actin cytoskeleton organization	1.03E-02
125	GO:0006094: gluconeogenesis	1.03E-02
126	GO:0005985: sucrose metabolic process	1.22E-02
127	GO:0046688: response to copper ion	1.22E-02
128	GO:0090351: seedling development	1.22E-02
129	GO:0042742: defense response to bacterium	1.24E-02
130	GO:0006364: rRNA processing	1.24E-02
131	GO:0009116: nucleoside metabolic process	1.42E-02
132	GO:0000027: ribosomal large subunit assembly	1.42E-02
133	GO:0051017: actin filament bundle assembly	1.42E-02
134	GO:0009768: photosynthesis, light harvesting in photosystem I	1.52E-02
135	GO:0061077: chaperone-mediated protein folding	1.62E-02
136	GO:0031408: oxylipin biosynthetic process	1.62E-02
137	GO:0016114: terpenoid biosynthetic process	1.62E-02
138	GO:0045454: cell redox homeostasis	1.75E-02
139	GO:0009306: protein secretion	1.95E-02
140	GO:0006457: protein folding	1.97E-02
141	GO:0016117: carotenoid biosynthetic process	2.07E-02
142	GO:0042335: cuticle development	2.19E-02
143	GO:0006662: glycerol ether metabolic process	2.31E-02
144	GO:0010182: sugar mediated signaling pathway	2.31E-02
145	GO:0015986: ATP synthesis coupled proton transport	2.43E-02
146	GO:0042744: hydrogen peroxide catabolic process	2.53E-02
147	GO:0000302: response to reactive oxygen species	2.68E-02
148	GO:0006413: translational initiation	2.85E-02
149	GO:0010090: trichome morphogenesis	2.94E-02
150	GO:0009451: RNA modification	3.13E-02
151	GO:0071805: potassium ion transmembrane transport	3.21E-02
152	GO:0009817: defense response to fungus, incompatible interaction	4.21E-02
153	GO:0048481: plant ovule development	4.21E-02
154	GO:0010311: lateral root formation	4.36E-02
155	GO:0009407: toxin catabolic process	4.51E-02
156	GO:0010218: response to far red light	4.51E-02
157	GO:0009853: photorespiration	4.97E-02
158	GO:0045087: innate immune response	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0046608: carotenoid isomerase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0008887: glycerate kinase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	0.00E+00
9	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
10	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
11	GO:0004823: leucine-tRNA ligase activity	0.00E+00
12	GO:0019843: rRNA binding	1.07E-25
13	GO:0003735: structural constituent of ribosome	1.97E-15
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.37E-08
15	GO:0005528: FK506 binding	2.83E-06
16	GO:0002161: aminoacyl-tRNA editing activity	1.21E-05
17	GO:0016987: sigma factor activity	4.90E-05
18	GO:0001053: plastid sigma factor activity	4.90E-05
19	GO:0008266: poly(U) RNA binding	5.23E-05
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.70E-04
21	GO:0009496: plastoquinol--plastocyanin reductase activity	2.70E-04
22	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.70E-04
23	GO:0005080: protein kinase C binding	2.70E-04
24	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.70E-04
25	GO:0008047: enzyme activator activity	5.32E-04
26	GO:0016168: chlorophyll binding	5.53E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	5.94E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.94E-04
29	GO:0030385: ferredoxin:thioredoxin reductase activity	5.94E-04
30	GO:0016630: protochlorophyllide reductase activity	5.94E-04
31	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.94E-04
32	GO:0005509: calcium ion binding	9.51E-04
33	GO:0016531: copper chaperone activity	9.62E-04
34	GO:0019829: cation-transporting ATPase activity	9.62E-04
35	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.62E-04
36	GO:0030267: glyoxylate reductase (NADP) activity	9.62E-04
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.62E-04
38	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	9.62E-04
39	GO:0016851: magnesium chelatase activity	1.38E-03
40	GO:0004550: nucleoside diphosphate kinase activity	1.38E-03
41	GO:0043023: ribosomal large subunit binding	1.38E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	1.76E-03
43	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.84E-03
44	GO:0043495: protein anchor	1.84E-03
45	GO:0004659: prenyltransferase activity	1.84E-03
46	GO:0004845: uracil phosphoribosyltransferase activity	1.84E-03
47	GO:0004812: aminoacyl-tRNA ligase activity	2.08E-03
48	GO:0003959: NADPH dehydrogenase activity	2.35E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	2.60E-03
50	GO:0003729: mRNA binding	2.71E-03
51	GO:0004130: cytochrome-c peroxidase activity	2.90E-03
52	GO:0016688: L-ascorbate peroxidase activity	2.90E-03
53	GO:0003723: RNA binding	3.33E-03
54	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.39E-03
55	GO:0051920: peroxiredoxin activity	3.49E-03
56	GO:0004849: uridine kinase activity	3.49E-03
57	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.49E-03
58	GO:0008235: metalloexopeptidase activity	4.12E-03
59	GO:0019899: enzyme binding	4.12E-03
60	GO:0016209: antioxidant activity	4.77E-03
61	GO:0052747: sinapyl alcohol dehydrogenase activity	4.77E-03
62	GO:0004033: aldo-keto reductase (NADP) activity	4.77E-03
63	GO:0043022: ribosome binding	4.77E-03
64	GO:0005375: copper ion transmembrane transporter activity	5.47E-03
65	GO:0005381: iron ion transmembrane transporter activity	6.96E-03
66	GO:0050661: NADP binding	8.11E-03
67	GO:0004177: aminopeptidase activity	8.58E-03
68	GO:0000049: tRNA binding	9.44E-03
69	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.44E-03
70	GO:0051537: 2 iron, 2 sulfur cluster binding	9.94E-03
71	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.03E-02
72	GO:0031072: heat shock protein binding	1.03E-02
73	GO:0051287: NAD binding	1.11E-02
74	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.24E-02
75	GO:0031409: pigment binding	1.32E-02
76	GO:0051536: iron-sulfur cluster binding	1.42E-02
77	GO:0015079: potassium ion transmembrane transporter activity	1.52E-02
78	GO:0051087: chaperone binding	1.52E-02
79	GO:0004176: ATP-dependent peptidase activity	1.62E-02
80	GO:0003727: single-stranded RNA binding	1.95E-02
81	GO:0046872: metal ion binding	2.03E-02
82	GO:0047134: protein-disulfide reductase activity	2.07E-02
83	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.31E-02
84	GO:0050662: coenzyme binding	2.43E-02
85	GO:0051015: actin filament binding	2.94E-02
86	GO:0008237: metallopeptidase activity	3.21E-02
87	GO:0016597: amino acid binding	3.34E-02
88	GO:0003743: translation initiation factor activity	3.57E-02
89	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.06E-02
90	GO:0008236: serine-type peptidase activity	4.06E-02
91	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.21E-02
92	GO:0003824: catalytic activity	4.35E-02
93	GO:0004222: metalloendopeptidase activity	4.51E-02
94	GO:0008168: methyltransferase activity	4.54E-02
95	GO:0004601: peroxidase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.28E-99
2	GO:0009570: chloroplast stroma	5.70E-62
3	GO:0009941: chloroplast envelope	1.87E-51
4	GO:0009535: chloroplast thylakoid membrane	4.96E-49
5	GO:0009579: thylakoid	9.18E-39
6	GO:0009543: chloroplast thylakoid lumen	1.07E-25
7	GO:0009534: chloroplast thylakoid	3.43E-22
8	GO:0031977: thylakoid lumen	3.44E-22
9	GO:0005840: ribosome	2.95E-18
10	GO:0009654: photosystem II oxygen evolving complex	1.23E-13
11	GO:0019898: extrinsic component of membrane	2.52E-10
12	GO:0030095: chloroplast photosystem II	1.98E-08
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.22E-05
14	GO:0010319: stromule	3.41E-05
15	GO:0000311: plastid large ribosomal subunit	3.48E-05
16	GO:0055035: plastid thylakoid membrane	7.79E-05
17	GO:0015934: large ribosomal subunit	9.37E-05
18	GO:0031969: chloroplast membrane	1.22E-04
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.70E-04
20	GO:0009515: granal stacked thylakoid	2.70E-04
21	GO:0009547: plastid ribosome	2.70E-04
22	GO:0009523: photosystem II	2.90E-04
23	GO:0009536: plastid	5.38E-04
24	GO:0010287: plastoglobule	6.54E-04
25	GO:0000312: plastid small ribosomal subunit	8.95E-04
26	GO:0009528: plastid inner membrane	9.62E-04
27	GO:0010007: magnesium chelatase complex	9.62E-04
28	GO:0032432: actin filament bundle	1.38E-03
29	GO:0009527: plastid outer membrane	1.84E-03
30	GO:0009526: plastid envelope	1.84E-03
31	GO:0009512: cytochrome b6f complex	2.35E-03
32	GO:0031209: SCAR complex	2.90E-03
33	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.90E-03
34	GO:0016020: membrane	3.45E-03
35	GO:0009295: nucleoid	3.83E-03
36	GO:0009533: chloroplast stromal thylakoid	4.12E-03
37	GO:0009539: photosystem II reaction center	5.47E-03
38	GO:0005884: actin filament	8.58E-03
39	GO:0032040: small-subunit processome	9.44E-03
40	GO:0009508: plastid chromosome	1.03E-02
41	GO:0030076: light-harvesting complex	1.22E-02
42	GO:0022626: cytosolic ribosome	1.25E-02
43	GO:0043234: protein complex	1.32E-02
44	GO:0042651: thylakoid membrane	1.52E-02
45	GO:0015935: small ribosomal subunit	1.62E-02
46	GO:0009532: plastid stroma	1.62E-02
47	GO:0009706: chloroplast inner membrane	1.77E-02
48	GO:0009522: photosystem I	2.43E-02
49	GO:0016021: integral component of membrane	2.85E-02
50	GO:0030529: intracellular ribonucleoprotein complex	3.48E-02
51	GO:0022627: cytosolic small ribosomal subunit	4.04E-02
52	GO:0046658: anchored component of plasma membrane	4.04E-02
53	GO:0009707: chloroplast outer membrane	4.21E-02