GO Enrichment Analysis of Co-expressed Genes with
AT2G15050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 6 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 7 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 8 | GO:0009773: photosynthetic electron transport in photosystem I | 2.32E-11 |
| 9 | GO:0015979: photosynthesis | 3.62E-09 |
| 10 | GO:0010027: thylakoid membrane organization | 1.00E-06 |
| 11 | GO:0015994: chlorophyll metabolic process | 3.66E-05 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 3.67E-05 |
| 13 | GO:0009735: response to cytokinin | 9.42E-05 |
| 14 | GO:0010196: nonphotochemical quenching | 1.57E-04 |
| 15 | GO:0065002: intracellular protein transmembrane transport | 2.27E-04 |
| 16 | GO:0010028: xanthophyll cycle | 2.27E-04 |
| 17 | GO:0034337: RNA folding | 2.27E-04 |
| 18 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.27E-04 |
| 19 | GO:0043953: protein transport by the Tat complex | 2.27E-04 |
| 20 | GO:0043489: RNA stabilization | 2.27E-04 |
| 21 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.27E-04 |
| 22 | GO:1904964: positive regulation of phytol biosynthetic process | 2.27E-04 |
| 23 | GO:0071482: cellular response to light stimulus | 2.48E-04 |
| 24 | GO:0016122: xanthophyll metabolic process | 5.05E-04 |
| 25 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 5.05E-04 |
| 26 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.05E-04 |
| 27 | GO:0035304: regulation of protein dephosphorylation | 5.05E-04 |
| 28 | GO:0018298: protein-chromophore linkage | 5.28E-04 |
| 29 | GO:0005983: starch catabolic process | 5.53E-04 |
| 30 | GO:0006094: gluconeogenesis | 6.27E-04 |
| 31 | GO:0010207: photosystem II assembly | 7.06E-04 |
| 32 | GO:0016050: vesicle organization | 8.21E-04 |
| 33 | GO:1902448: positive regulation of shade avoidance | 8.21E-04 |
| 34 | GO:0006000: fructose metabolic process | 8.21E-04 |
| 35 | GO:0090391: granum assembly | 8.21E-04 |
| 36 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 8.21E-04 |
| 37 | GO:0006518: peptide metabolic process | 8.21E-04 |
| 38 | GO:0051604: protein maturation | 8.21E-04 |
| 39 | GO:0006833: water transport | 8.76E-04 |
| 40 | GO:0010025: wax biosynthetic process | 8.76E-04 |
| 41 | GO:0055085: transmembrane transport | 9.23E-04 |
| 42 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.06E-03 |
| 43 | GO:2001141: regulation of RNA biosynthetic process | 1.17E-03 |
| 44 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.17E-03 |
| 45 | GO:0080170: hydrogen peroxide transmembrane transport | 1.17E-03 |
| 46 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.17E-03 |
| 47 | GO:1901332: negative regulation of lateral root development | 1.17E-03 |
| 48 | GO:0010021: amylopectin biosynthetic process | 1.56E-03 |
| 49 | GO:0009765: photosynthesis, light harvesting | 1.56E-03 |
| 50 | GO:0006109: regulation of carbohydrate metabolic process | 1.56E-03 |
| 51 | GO:0045727: positive regulation of translation | 1.56E-03 |
| 52 | GO:0005975: carbohydrate metabolic process | 1.62E-03 |
| 53 | GO:0042335: cuticle development | 1.76E-03 |
| 54 | GO:0034220: ion transmembrane transport | 1.76E-03 |
| 55 | GO:0006461: protein complex assembly | 1.99E-03 |
| 56 | GO:0032543: mitochondrial translation | 1.99E-03 |
| 57 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.99E-03 |
| 58 | GO:0019252: starch biosynthetic process | 2.18E-03 |
| 59 | GO:0009416: response to light stimulus | 2.33E-03 |
| 60 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.45E-03 |
| 61 | GO:0042549: photosystem II stabilization | 2.45E-03 |
| 62 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.45E-03 |
| 63 | GO:0016554: cytidine to uridine editing | 2.45E-03 |
| 64 | GO:0009913: epidermal cell differentiation | 2.45E-03 |
| 65 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.45E-03 |
| 66 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.45E-03 |
| 67 | GO:0010019: chloroplast-nucleus signaling pathway | 2.94E-03 |
| 68 | GO:1901259: chloroplast rRNA processing | 2.94E-03 |
| 69 | GO:0015693: magnesium ion transport | 3.47E-03 |
| 70 | GO:0009772: photosynthetic electron transport in photosystem II | 3.47E-03 |
| 71 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.47E-03 |
| 72 | GO:1900057: positive regulation of leaf senescence | 3.47E-03 |
| 73 | GO:0009645: response to low light intensity stimulus | 3.47E-03 |
| 74 | GO:0010492: maintenance of shoot apical meristem identity | 4.02E-03 |
| 75 | GO:0008610: lipid biosynthetic process | 4.02E-03 |
| 76 | GO:0009642: response to light intensity | 4.02E-03 |
| 77 | GO:0008152: metabolic process | 4.45E-03 |
| 78 | GO:0006002: fructose 6-phosphate metabolic process | 4.60E-03 |
| 79 | GO:0015996: chlorophyll catabolic process | 4.60E-03 |
| 80 | GO:0009657: plastid organization | 4.60E-03 |
| 81 | GO:0032544: plastid translation | 4.60E-03 |
| 82 | GO:0009631: cold acclimation | 5.06E-03 |
| 83 | GO:0048507: meristem development | 5.22E-03 |
| 84 | GO:0006754: ATP biosynthetic process | 5.22E-03 |
| 85 | GO:0000373: Group II intron splicing | 5.22E-03 |
| 86 | GO:0009637: response to blue light | 5.54E-03 |
| 87 | GO:0034599: cellular response to oxidative stress | 5.79E-03 |
| 88 | GO:0010205: photoinhibition | 5.85E-03 |
| 89 | GO:0009638: phototropism | 5.85E-03 |
| 90 | GO:1900865: chloroplast RNA modification | 5.85E-03 |
| 91 | GO:0042761: very long-chain fatty acid biosynthetic process | 5.85E-03 |
| 92 | GO:0010114: response to red light | 7.14E-03 |
| 93 | GO:0000038: very long-chain fatty acid metabolic process | 7.20E-03 |
| 94 | GO:0019684: photosynthesis, light reaction | 7.20E-03 |
| 95 | GO:0009073: aromatic amino acid family biosynthetic process | 7.20E-03 |
| 96 | GO:0043085: positive regulation of catalytic activity | 7.20E-03 |
| 97 | GO:0006352: DNA-templated transcription, initiation | 7.20E-03 |
| 98 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.92E-03 |
| 99 | GO:0006855: drug transmembrane transport | 8.34E-03 |
| 100 | GO:0009718: anthocyanin-containing compound biosynthetic process | 8.66E-03 |
| 101 | GO:0005986: sucrose biosynthetic process | 8.66E-03 |
| 102 | GO:0009785: blue light signaling pathway | 8.66E-03 |
| 103 | GO:0010628: positive regulation of gene expression | 8.66E-03 |
| 104 | GO:0010143: cutin biosynthetic process | 9.42E-03 |
| 105 | GO:0019253: reductive pentose-phosphate cycle | 9.42E-03 |
| 106 | GO:0006364: rRNA processing | 9.64E-03 |
| 107 | GO:0005985: sucrose metabolic process | 1.02E-02 |
| 108 | GO:0071732: cellular response to nitric oxide | 1.02E-02 |
| 109 | GO:0006096: glycolytic process | 1.14E-02 |
| 110 | GO:0008299: isoprenoid biosynthetic process | 1.27E-02 |
| 111 | GO:0006418: tRNA aminoacylation for protein translation | 1.27E-02 |
| 112 | GO:0009695: jasmonic acid biosynthetic process | 1.27E-02 |
| 113 | GO:0045454: cell redox homeostasis | 1.28E-02 |
| 114 | GO:0031408: oxylipin biosynthetic process | 1.36E-02 |
| 115 | GO:0016226: iron-sulfur cluster assembly | 1.45E-02 |
| 116 | GO:0035428: hexose transmembrane transport | 1.45E-02 |
| 117 | GO:0006012: galactose metabolic process | 1.54E-02 |
| 118 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.54E-02 |
| 119 | GO:0071369: cellular response to ethylene stimulus | 1.54E-02 |
| 120 | GO:0006810: transport | 1.56E-02 |
| 121 | GO:0080022: primary root development | 1.83E-02 |
| 122 | GO:0046323: glucose import | 1.93E-02 |
| 123 | GO:0006662: glycerol ether metabolic process | 1.93E-02 |
| 124 | GO:0042744: hydrogen peroxide catabolic process | 1.97E-02 |
| 125 | GO:0048544: recognition of pollen | 2.03E-02 |
| 126 | GO:0015986: ATP synthesis coupled proton transport | 2.03E-02 |
| 127 | GO:0008654: phospholipid biosynthetic process | 2.14E-02 |
| 128 | GO:0000302: response to reactive oxygen species | 2.24E-02 |
| 129 | GO:0016032: viral process | 2.35E-02 |
| 130 | GO:0009451: RNA modification | 2.44E-02 |
| 131 | GO:0071281: cellular response to iron ion | 2.46E-02 |
| 132 | GO:0009828: plant-type cell wall loosening | 2.57E-02 |
| 133 | GO:0009567: double fertilization forming a zygote and endosperm | 2.57E-02 |
| 134 | GO:0009607: response to biotic stimulus | 3.03E-02 |
| 135 | GO:0000160: phosphorelay signal transduction system | 3.65E-02 |
| 136 | GO:0010311: lateral root formation | 3.65E-02 |
| 137 | GO:0055114: oxidation-reduction process | 3.66E-02 |
| 138 | GO:0009658: chloroplast organization | 3.68E-02 |
| 139 | GO:0010218: response to far red light | 3.77E-02 |
| 140 | GO:0009409: response to cold | 4.10E-02 |
| 141 | GO:0045087: innate immune response | 4.17E-02 |
| 142 | GO:0080167: response to karrikin | 4.56E-02 |
| 143 | GO:0006631: fatty acid metabolic process | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0005048: signal sequence binding | 0.00E+00 |
| 4 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 6 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 7 | GO:0051060: pullulanase activity | 0.00E+00 |
| 8 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 9 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 10 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 11 | GO:0008266: poly(U) RNA binding | 3.55E-05 |
| 12 | GO:0005528: FK506 binding | 6.01E-05 |
| 13 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.95E-04 |
| 14 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.27E-04 |
| 15 | GO:0050308: sugar-phosphatase activity | 2.27E-04 |
| 16 | GO:0010242: oxygen evolving activity | 2.27E-04 |
| 17 | GO:0004856: xylulokinase activity | 2.27E-04 |
| 18 | GO:0004321: fatty-acyl-CoA synthase activity | 2.27E-04 |
| 19 | GO:0019203: carbohydrate phosphatase activity | 2.27E-04 |
| 20 | GO:0034256: chlorophyll(ide) b reductase activity | 2.27E-04 |
| 21 | GO:0016168: chlorophyll binding | 4.03E-04 |
| 22 | GO:0047746: chlorophyllase activity | 5.05E-04 |
| 23 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.05E-04 |
| 24 | GO:0033201: alpha-1,4-glucan synthase activity | 5.05E-04 |
| 25 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 5.05E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 5.05E-04 |
| 27 | GO:0004565: beta-galactosidase activity | 6.27E-04 |
| 28 | GO:0070402: NADPH binding | 8.21E-04 |
| 29 | GO:0004373: glycogen (starch) synthase activity | 8.21E-04 |
| 30 | GO:0002161: aminoacyl-tRNA editing activity | 8.21E-04 |
| 31 | GO:0004751: ribose-5-phosphate isomerase activity | 8.21E-04 |
| 32 | GO:0031409: pigment binding | 8.76E-04 |
| 33 | GO:0019201: nucleotide kinase activity | 1.17E-03 |
| 34 | GO:0016851: magnesium chelatase activity | 1.17E-03 |
| 35 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 1.17E-03 |
| 36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.18E-03 |
| 37 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.56E-03 |
| 38 | GO:0001053: plastid sigma factor activity | 1.56E-03 |
| 39 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.56E-03 |
| 40 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.56E-03 |
| 41 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.56E-03 |
| 42 | GO:0016987: sigma factor activity | 1.56E-03 |
| 43 | GO:0043495: protein anchor | 1.56E-03 |
| 44 | GO:0009011: starch synthase activity | 1.56E-03 |
| 45 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.99E-03 |
| 46 | GO:0003959: NADPH dehydrogenase activity | 1.99E-03 |
| 47 | GO:0016853: isomerase activity | 2.03E-03 |
| 48 | GO:0016746: transferase activity, transferring acyl groups | 2.29E-03 |
| 49 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.45E-03 |
| 50 | GO:2001070: starch binding | 2.45E-03 |
| 51 | GO:0004332: fructose-bisphosphate aldolase activity | 2.45E-03 |
| 52 | GO:0004130: cytochrome-c peroxidase activity | 2.45E-03 |
| 53 | GO:0042578: phosphoric ester hydrolase activity | 2.45E-03 |
| 54 | GO:0004556: alpha-amylase activity | 2.45E-03 |
| 55 | GO:0016688: L-ascorbate peroxidase activity | 2.45E-03 |
| 56 | GO:0004017: adenylate kinase activity | 2.94E-03 |
| 57 | GO:0015250: water channel activity | 3.36E-03 |
| 58 | GO:0016787: hydrolase activity | 3.46E-03 |
| 59 | GO:0019899: enzyme binding | 3.47E-03 |
| 60 | GO:0030246: carbohydrate binding | 3.92E-03 |
| 61 | GO:0008312: 7S RNA binding | 4.02E-03 |
| 62 | GO:0004034: aldose 1-epimerase activity | 4.02E-03 |
| 63 | GO:0052747: sinapyl alcohol dehydrogenase activity | 4.02E-03 |
| 64 | GO:0043022: ribosome binding | 4.02E-03 |
| 65 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 5.22E-03 |
| 66 | GO:0016207: 4-coumarate-CoA ligase activity | 5.22E-03 |
| 67 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 5.22E-03 |
| 68 | GO:0042802: identical protein binding | 6.00E-03 |
| 69 | GO:0030234: enzyme regulator activity | 6.51E-03 |
| 70 | GO:0008047: enzyme activator activity | 6.51E-03 |
| 71 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 7.92E-03 |
| 72 | GO:0015095: magnesium ion transmembrane transporter activity | 8.66E-03 |
| 73 | GO:0009982: pseudouridine synthase activity | 8.66E-03 |
| 74 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.10E-02 |
| 75 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.10E-02 |
| 76 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.10E-02 |
| 77 | GO:0051536: iron-sulfur cluster binding | 1.19E-02 |
| 78 | GO:0004857: enzyme inhibitor activity | 1.19E-02 |
| 79 | GO:0016874: ligase activity | 1.29E-02 |
| 80 | GO:0004176: ATP-dependent peptidase activity | 1.36E-02 |
| 81 | GO:0022891: substrate-specific transmembrane transporter activity | 1.54E-02 |
| 82 | GO:0003729: mRNA binding | 1.59E-02 |
| 83 | GO:0047134: protein-disulfide reductase activity | 1.73E-02 |
| 84 | GO:0004812: aminoacyl-tRNA ligase activity | 1.73E-02 |
| 85 | GO:0019843: rRNA binding | 1.73E-02 |
| 86 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.93E-02 |
| 87 | GO:0004791: thioredoxin-disulfide reductase activity | 2.03E-02 |
| 88 | GO:0005355: glucose transmembrane transporter activity | 2.03E-02 |
| 89 | GO:0050662: coenzyme binding | 2.03E-02 |
| 90 | GO:0048038: quinone binding | 2.24E-02 |
| 91 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.46E-02 |
| 92 | GO:0000156: phosphorelay response regulator activity | 2.46E-02 |
| 93 | GO:0016791: phosphatase activity | 2.57E-02 |
| 94 | GO:0004721: phosphoprotein phosphatase activity | 3.27E-02 |
| 95 | GO:0008236: serine-type peptidase activity | 3.40E-02 |
| 96 | GO:0015238: drug transmembrane transporter activity | 3.65E-02 |
| 97 | GO:0016788: hydrolase activity, acting on ester bonds | 3.75E-02 |
| 98 | GO:0004222: metalloendopeptidase activity | 3.77E-02 |
| 99 | GO:0030145: manganese ion binding | 3.90E-02 |
| 100 | GO:0005515: protein binding | 3.92E-02 |
| 101 | GO:0016491: oxidoreductase activity | 3.94E-02 |
| 102 | GO:0003746: translation elongation factor activity | 4.17E-02 |
| 103 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 4.43E-02 |
| 104 | GO:0008233: peptidase activity | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.69E-52 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 4.08E-31 |
| 5 | GO:0009534: chloroplast thylakoid | 2.19E-29 |
| 6 | GO:0009570: chloroplast stroma | 1.38E-21 |
| 7 | GO:0009941: chloroplast envelope | 4.98E-18 |
| 8 | GO:0009579: thylakoid | 1.54E-11 |
| 9 | GO:0031977: thylakoid lumen | 7.41E-09 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.09E-08 |
| 11 | GO:0010287: plastoglobule | 2.03E-07 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.05E-06 |
| 13 | GO:0030095: chloroplast photosystem II | 3.55E-05 |
| 14 | GO:0031969: chloroplast membrane | 6.62E-05 |
| 15 | GO:0042651: thylakoid membrane | 7.03E-05 |
| 16 | GO:0031361: integral component of thylakoid membrane | 2.27E-04 |
| 17 | GO:0009782: photosystem I antenna complex | 2.27E-04 |
| 18 | GO:0009515: granal stacked thylakoid | 2.27E-04 |
| 19 | GO:0080085: signal recognition particle, chloroplast targeting | 5.05E-04 |
| 20 | GO:0030076: light-harvesting complex | 7.89E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 8.21E-04 |
| 22 | GO:0033281: TAT protein transport complex | 8.21E-04 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 1.06E-03 |
| 24 | GO:0016020: membrane | 1.13E-03 |
| 25 | GO:0048046: apoplast | 1.39E-03 |
| 26 | GO:0009544: chloroplast ATP synthase complex | 1.56E-03 |
| 27 | GO:0009526: plastid envelope | 1.56E-03 |
| 28 | GO:0055035: plastid thylakoid membrane | 1.99E-03 |
| 29 | GO:0009523: photosystem II | 2.18E-03 |
| 30 | GO:0019898: extrinsic component of membrane | 2.18E-03 |
| 31 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.45E-03 |
| 32 | GO:0030529: intracellular ribonucleoprotein complex | 3.36E-03 |
| 33 | GO:0009533: chloroplast stromal thylakoid | 3.47E-03 |
| 34 | GO:0016021: integral component of membrane | 3.69E-03 |
| 35 | GO:0009501: amyloplast | 4.02E-03 |
| 36 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.60E-03 |
| 37 | GO:0008180: COP9 signalosome | 5.22E-03 |
| 38 | GO:0032040: small-subunit processome | 7.92E-03 |
| 39 | GO:0009508: plastid chromosome | 8.66E-03 |
| 40 | GO:0009706: chloroplast inner membrane | 1.38E-02 |
| 41 | GO:0009522: photosystem I | 2.03E-02 |
| 42 | GO:0010319: stromule | 2.68E-02 |
| 43 | GO:0009295: nucleoid | 2.68E-02 |
| 44 | GO:0019005: SCF ubiquitin ligase complex | 3.52E-02 |