GO Enrichment Analysis of Co-expressed Genes with
AT2G13360
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019685: photosynthesis, dark reaction | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0090393: sepal giant cell development | 0.00E+00 |
| 5 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 6 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 7 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 8 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 9 | GO:0009902: chloroplast relocation | 8.34E-08 |
| 10 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.25E-06 |
| 11 | GO:0031022: nuclear migration along microfilament | 4.66E-06 |
| 12 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.08E-05 |
| 13 | GO:0006094: gluconeogenesis | 1.30E-05 |
| 14 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.01E-05 |
| 15 | GO:0006546: glycine catabolic process | 2.01E-05 |
| 16 | GO:0009903: chloroplast avoidance movement | 6.84E-05 |
| 17 | GO:0009854: oxidative photosynthetic carbon pathway | 6.84E-05 |
| 18 | GO:0016559: peroxisome fission | 1.18E-04 |
| 19 | GO:0008610: lipid biosynthetic process | 1.18E-04 |
| 20 | GO:0071482: cellular response to light stimulus | 1.47E-04 |
| 21 | GO:0006723: cuticle hydrocarbon biosynthetic process | 1.60E-04 |
| 22 | GO:0006659: phosphatidylserine biosynthetic process | 1.60E-04 |
| 23 | GO:0080093: regulation of photorespiration | 1.60E-04 |
| 24 | GO:0031998: regulation of fatty acid beta-oxidation | 1.60E-04 |
| 25 | GO:0010362: negative regulation of anion channel activity by blue light | 1.60E-04 |
| 26 | GO:1902265: abscisic acid homeostasis | 1.60E-04 |
| 27 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.60E-04 |
| 28 | GO:0051775: response to redox state | 1.60E-04 |
| 29 | GO:0006098: pentose-phosphate shunt | 1.80E-04 |
| 30 | GO:0055114: oxidation-reduction process | 3.09E-04 |
| 31 | GO:0097054: L-glutamate biosynthetic process | 3.65E-04 |
| 32 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.65E-04 |
| 33 | GO:0009853: photorespiration | 3.82E-04 |
| 34 | GO:0006108: malate metabolic process | 3.89E-04 |
| 35 | GO:0005986: sucrose biosynthetic process | 3.89E-04 |
| 36 | GO:0019253: reductive pentose-phosphate cycle | 4.38E-04 |
| 37 | GO:0007031: peroxisome organization | 4.92E-04 |
| 38 | GO:0006810: transport | 5.05E-04 |
| 39 | GO:0044375: regulation of peroxisome size | 5.97E-04 |
| 40 | GO:0005977: glycogen metabolic process | 5.97E-04 |
| 41 | GO:0006011: UDP-glucose metabolic process | 5.97E-04 |
| 42 | GO:0045910: negative regulation of DNA recombination | 5.97E-04 |
| 43 | GO:0000913: preprophase band assembly | 5.97E-04 |
| 44 | GO:0006000: fructose metabolic process | 5.97E-04 |
| 45 | GO:0043447: alkane biosynthetic process | 5.97E-04 |
| 46 | GO:0080092: regulation of pollen tube growth | 7.98E-04 |
| 47 | GO:0006730: one-carbon metabolic process | 7.98E-04 |
| 48 | GO:2001141: regulation of RNA biosynthetic process | 8.53E-04 |
| 49 | GO:0032877: positive regulation of DNA endoreduplication | 8.53E-04 |
| 50 | GO:0006107: oxaloacetate metabolic process | 8.53E-04 |
| 51 | GO:0006537: glutamate biosynthetic process | 8.53E-04 |
| 52 | GO:0042823: pyridoxal phosphate biosynthetic process | 8.53E-04 |
| 53 | GO:0010731: protein glutathionylation | 8.53E-04 |
| 54 | GO:0006734: NADH metabolic process | 1.13E-03 |
| 55 | GO:0019676: ammonia assimilation cycle | 1.13E-03 |
| 56 | GO:0048442: sepal development | 1.13E-03 |
| 57 | GO:0006021: inositol biosynthetic process | 1.13E-03 |
| 58 | GO:0009904: chloroplast accumulation movement | 1.43E-03 |
| 59 | GO:0006097: glyoxylate cycle | 1.43E-03 |
| 60 | GO:0009247: glycolipid biosynthetic process | 1.43E-03 |
| 61 | GO:0016120: carotene biosynthetic process | 1.43E-03 |
| 62 | GO:0043097: pyrimidine nucleoside salvage | 1.43E-03 |
| 63 | GO:0050665: hydrogen peroxide biosynthetic process | 1.76E-03 |
| 64 | GO:0010942: positive regulation of cell death | 1.76E-03 |
| 65 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.76E-03 |
| 66 | GO:0006206: pyrimidine nucleobase metabolic process | 1.76E-03 |
| 67 | GO:0046686: response to cadmium ion | 2.08E-03 |
| 68 | GO:0042026: protein refolding | 2.11E-03 |
| 69 | GO:0010076: maintenance of floral meristem identity | 2.11E-03 |
| 70 | GO:0006458: 'de novo' protein folding | 2.11E-03 |
| 71 | GO:0009645: response to low light intensity stimulus | 2.48E-03 |
| 72 | GO:0018298: protein-chromophore linkage | 2.69E-03 |
| 73 | GO:0009704: de-etiolation | 2.88E-03 |
| 74 | GO:0052543: callose deposition in cell wall | 2.88E-03 |
| 75 | GO:0048564: photosystem I assembly | 2.88E-03 |
| 76 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.88E-03 |
| 77 | GO:0019375: galactolipid biosynthetic process | 2.88E-03 |
| 78 | GO:0006002: fructose 6-phosphate metabolic process | 3.29E-03 |
| 79 | GO:0009657: plastid organization | 3.29E-03 |
| 80 | GO:0006997: nucleus organization | 3.29E-03 |
| 81 | GO:0009637: response to blue light | 3.40E-03 |
| 82 | GO:0006099: tricarboxylic acid cycle | 3.55E-03 |
| 83 | GO:0000373: Group II intron splicing | 3.72E-03 |
| 84 | GO:0009056: catabolic process | 3.72E-03 |
| 85 | GO:0009821: alkaloid biosynthetic process | 3.72E-03 |
| 86 | GO:0009658: chloroplast organization | 4.12E-03 |
| 87 | GO:0009638: phototropism | 4.17E-03 |
| 88 | GO:0006298: mismatch repair | 4.64E-03 |
| 89 | GO:0048441: petal development | 4.64E-03 |
| 90 | GO:0006352: DNA-templated transcription, initiation | 5.12E-03 |
| 91 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.12E-03 |
| 92 | GO:0009773: photosynthetic electron transport in photosystem I | 5.12E-03 |
| 93 | GO:0006415: translational termination | 5.12E-03 |
| 94 | GO:0010152: pollen maturation | 5.62E-03 |
| 95 | GO:0009767: photosynthetic electron transport chain | 6.14E-03 |
| 96 | GO:0030048: actin filament-based movement | 6.14E-03 |
| 97 | GO:0048440: carpel development | 6.67E-03 |
| 98 | GO:0006096: glycolytic process | 6.95E-03 |
| 99 | GO:0090351: seedling development | 7.22E-03 |
| 100 | GO:0042343: indole glucosinolate metabolic process | 7.22E-03 |
| 101 | GO:0010025: wax biosynthetic process | 7.79E-03 |
| 102 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.79E-03 |
| 103 | GO:0009742: brassinosteroid mediated signaling pathway | 8.87E-03 |
| 104 | GO:0016575: histone deacetylation | 8.97E-03 |
| 105 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.97E-03 |
| 106 | GO:0098542: defense response to other organism | 9.59E-03 |
| 107 | GO:0061077: chaperone-mediated protein folding | 9.59E-03 |
| 108 | GO:0016226: iron-sulfur cluster assembly | 1.02E-02 |
| 109 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.02E-02 |
| 110 | GO:0009058: biosynthetic process | 1.11E-02 |
| 111 | GO:0048443: stamen development | 1.15E-02 |
| 112 | GO:0016117: carotenoid biosynthetic process | 1.22E-02 |
| 113 | GO:0042742: defense response to bacterium | 1.26E-02 |
| 114 | GO:0010118: stomatal movement | 1.29E-02 |
| 115 | GO:0042631: cellular response to water deprivation | 1.29E-02 |
| 116 | GO:0042335: cuticle development | 1.29E-02 |
| 117 | GO:0006520: cellular amino acid metabolic process | 1.36E-02 |
| 118 | GO:0007018: microtubule-based movement | 1.43E-02 |
| 119 | GO:0006814: sodium ion transport | 1.43E-02 |
| 120 | GO:0019252: starch biosynthetic process | 1.50E-02 |
| 121 | GO:0008654: phospholipid biosynthetic process | 1.50E-02 |
| 122 | GO:0009556: microsporogenesis | 1.50E-02 |
| 123 | GO:0009791: post-embryonic development | 1.50E-02 |
| 124 | GO:0009735: response to cytokinin | 1.64E-02 |
| 125 | GO:0016032: viral process | 1.65E-02 |
| 126 | GO:0048235: pollen sperm cell differentiation | 1.65E-02 |
| 127 | GO:0030163: protein catabolic process | 1.73E-02 |
| 128 | GO:0000910: cytokinesis | 1.97E-02 |
| 129 | GO:0010027: thylakoid membrane organization | 2.05E-02 |
| 130 | GO:0001666: response to hypoxia | 2.05E-02 |
| 131 | GO:0010029: regulation of seed germination | 2.13E-02 |
| 132 | GO:0005975: carbohydrate metabolic process | 2.35E-02 |
| 133 | GO:0009817: defense response to fungus, incompatible interaction | 2.47E-02 |
| 134 | GO:0048481: plant ovule development | 2.47E-02 |
| 135 | GO:0000160: phosphorelay signal transduction system | 2.56E-02 |
| 136 | GO:0080167: response to karrikin | 2.79E-02 |
| 137 | GO:0016051: carbohydrate biosynthetic process | 2.93E-02 |
| 138 | GO:0045454: cell redox homeostasis | 3.34E-02 |
| 139 | GO:0009744: response to sucrose | 3.51E-02 |
| 140 | GO:0000209: protein polyubiquitination | 3.61E-02 |
| 141 | GO:0009644: response to high light intensity | 3.71E-02 |
| 142 | GO:0009636: response to toxic substance | 3.81E-02 |
| 143 | GO:0000165: MAPK cascade | 4.02E-02 |
| 144 | GO:0006417: regulation of translation | 4.66E-02 |
| 145 | GO:0048316: seed development | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 2 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 3 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 4 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 5 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 8 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 9 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 10 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 11 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 12 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 13 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 14 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 15 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 16 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.08E-05 |
| 17 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.01E-05 |
| 18 | GO:0016615: malate dehydrogenase activity | 4.89E-05 |
| 19 | GO:0004332: fructose-bisphosphate aldolase activity | 4.89E-05 |
| 20 | GO:0030060: L-malate dehydrogenase activity | 6.84E-05 |
| 21 | GO:0048038: quinone binding | 1.14E-04 |
| 22 | GO:0004033: aldo-keto reductase (NADP) activity | 1.18E-04 |
| 23 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.60E-04 |
| 24 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.60E-04 |
| 25 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.97E-04 |
| 26 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 3.65E-04 |
| 27 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 3.65E-04 |
| 28 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.65E-04 |
| 29 | GO:0004512: inositol-3-phosphate synthase activity | 3.65E-04 |
| 30 | GO:0008967: phosphoglycolate phosphatase activity | 3.65E-04 |
| 31 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 5.97E-04 |
| 32 | GO:0070402: NADPH binding | 5.97E-04 |
| 33 | GO:0032947: protein complex scaffold | 5.97E-04 |
| 34 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.97E-04 |
| 35 | GO:0050307: sucrose-phosphate phosphatase activity | 5.97E-04 |
| 36 | GO:0009882: blue light photoreceptor activity | 8.53E-04 |
| 37 | GO:0008508: bile acid:sodium symporter activity | 8.53E-04 |
| 38 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 8.53E-04 |
| 39 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 8.53E-04 |
| 40 | GO:0035250: UDP-galactosyltransferase activity | 8.53E-04 |
| 41 | GO:0048487: beta-tubulin binding | 8.53E-04 |
| 42 | GO:0016149: translation release factor activity, codon specific | 8.53E-04 |
| 43 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 8.53E-04 |
| 44 | GO:0008891: glycolate oxidase activity | 1.13E-03 |
| 45 | GO:0001053: plastid sigma factor activity | 1.13E-03 |
| 46 | GO:0016987: sigma factor activity | 1.13E-03 |
| 47 | GO:0010181: FMN binding | 1.26E-03 |
| 48 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.43E-03 |
| 49 | GO:0016491: oxidoreductase activity | 1.49E-03 |
| 50 | GO:0030983: mismatched DNA binding | 1.76E-03 |
| 51 | GO:0080030: methyl indole-3-acetate esterase activity | 1.76E-03 |
| 52 | GO:0042578: phosphoric ester hydrolase activity | 1.76E-03 |
| 53 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.11E-03 |
| 54 | GO:0004849: uridine kinase activity | 2.11E-03 |
| 55 | GO:0043022: ribosome binding | 2.88E-03 |
| 56 | GO:0042802: identical protein binding | 3.20E-03 |
| 57 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 3.29E-03 |
| 58 | GO:0003747: translation release factor activity | 3.72E-03 |
| 59 | GO:0016844: strictosidine synthase activity | 4.17E-03 |
| 60 | GO:0044183: protein binding involved in protein folding | 5.12E-03 |
| 61 | GO:0004860: protein kinase inhibitor activity | 5.12E-03 |
| 62 | GO:0004089: carbonate dehydratase activity | 6.14E-03 |
| 63 | GO:0031072: heat shock protein binding | 6.14E-03 |
| 64 | GO:0000155: phosphorelay sensor kinase activity | 6.14E-03 |
| 65 | GO:0008266: poly(U) RNA binding | 6.67E-03 |
| 66 | GO:0031409: pigment binding | 7.79E-03 |
| 67 | GO:0051082: unfolded protein binding | 8.37E-03 |
| 68 | GO:0051536: iron-sulfur cluster binding | 8.38E-03 |
| 69 | GO:0004407: histone deacetylase activity | 8.38E-03 |
| 70 | GO:0043424: protein histidine kinase binding | 8.97E-03 |
| 71 | GO:0033612: receptor serine/threonine kinase binding | 9.59E-03 |
| 72 | GO:0003756: protein disulfide isomerase activity | 1.15E-02 |
| 73 | GO:0003824: catalytic activity | 1.45E-02 |
| 74 | GO:0003684: damaged DNA binding | 1.81E-02 |
| 75 | GO:0005515: protein binding | 1.90E-02 |
| 76 | GO:0016168: chlorophyll binding | 2.13E-02 |
| 77 | GO:0016788: hydrolase activity, acting on ester bonds | 2.29E-02 |
| 78 | GO:0004222: metalloendopeptidase activity | 2.65E-02 |
| 79 | GO:0050897: cobalt ion binding | 2.74E-02 |
| 80 | GO:0004364: glutathione transferase activity | 3.41E-02 |
| 81 | GO:0043621: protein self-association | 3.71E-02 |
| 82 | GO:0005198: structural molecule activity | 3.81E-02 |
| 83 | GO:0016787: hydrolase activity | 3.88E-02 |
| 84 | GO:0051287: NAD binding | 4.02E-02 |
| 85 | GO:0005506: iron ion binding | 4.33E-02 |
| 86 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.34E-02 |
| 87 | GO:0003777: microtubule motor activity | 4.66E-02 |
| 88 | GO:0031625: ubiquitin protein ligase binding | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 5.04E-27 |
| 3 | GO:0009570: chloroplast stroma | 1.03E-11 |
| 4 | GO:0009941: chloroplast envelope | 5.90E-11 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.70E-10 |
| 6 | GO:0005960: glycine cleavage complex | 1.08E-05 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.60E-05 |
| 8 | GO:0048046: apoplast | 2.03E-05 |
| 9 | GO:0005779: integral component of peroxisomal membrane | 1.47E-04 |
| 10 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.60E-04 |
| 11 | GO:0009782: photosystem I antenna complex | 1.60E-04 |
| 12 | GO:0009534: chloroplast thylakoid | 3.03E-04 |
| 13 | GO:0009509: chromoplast | 5.97E-04 |
| 14 | GO:0005777: peroxisome | 1.24E-03 |
| 15 | GO:0010287: plastoglobule | 1.47E-03 |
| 16 | GO:0005623: cell | 1.63E-03 |
| 17 | GO:0005778: peroxisomal membrane | 1.84E-03 |
| 18 | GO:0005759: mitochondrial matrix | 2.10E-03 |
| 19 | GO:0016324: apical plasma membrane | 4.64E-03 |
| 20 | GO:0009579: thylakoid | 5.66E-03 |
| 21 | GO:0019013: viral nucleocapsid | 6.14E-03 |
| 22 | GO:0009508: plastid chromosome | 6.14E-03 |
| 23 | GO:0030095: chloroplast photosystem II | 6.67E-03 |
| 24 | GO:0030076: light-harvesting complex | 7.22E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 8.37E-03 |
| 26 | GO:0009654: photosystem II oxygen evolving complex | 8.97E-03 |
| 27 | GO:0009543: chloroplast thylakoid lumen | 1.05E-02 |
| 28 | GO:0005871: kinesin complex | 1.22E-02 |
| 29 | GO:0019898: extrinsic component of membrane | 1.50E-02 |
| 30 | GO:0009504: cell plate | 1.50E-02 |
| 31 | GO:0031965: nuclear membrane | 1.50E-02 |
| 32 | GO:0005694: chromosome | 1.65E-02 |
| 33 | GO:0010319: stromule | 1.89E-02 |
| 34 | GO:0009295: nucleoid | 1.89E-02 |
| 35 | GO:0030529: intracellular ribonucleoprotein complex | 2.05E-02 |
| 36 | GO:0009707: chloroplast outer membrane | 2.47E-02 |
| 37 | GO:0031969: chloroplast membrane | 2.79E-02 |
| 38 | GO:0005819: spindle | 3.12E-02 |
| 39 | GO:0031977: thylakoid lumen | 3.31E-02 |
| 40 | GO:0005635: nuclear envelope | 4.55E-02 |
| 41 | GO:0005747: mitochondrial respiratory chain complex I | 4.99E-02 |