Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015822: ornithine transport0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0051503: adenine nucleotide transport0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0090042: tubulin deacetylation0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0019464: glycine decarboxylation via glycine cleavage system2.78E-07
11GO:0006810: transport7.60E-06
12GO:0016117: carotenoid biosynthetic process7.98E-06
13GO:0015979: photosynthesis1.81E-05
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.46E-05
15GO:0006546: glycine catabolic process4.46E-05
16GO:0019253: reductive pentose-phosphate cycle4.63E-05
17GO:0009658: chloroplast organization5.90E-05
18GO:0009853: photorespiration9.61E-05
19GO:0010190: cytochrome b6f complex assembly1.04E-04
20GO:0042549: photosystem II stabilization1.04E-04
21GO:0051180: vitamin transport2.55E-04
22GO:0009443: pyridoxal 5'-phosphate salvage2.55E-04
23GO:0006438: valyl-tRNA aminoacylation2.55E-04
24GO:0030974: thiamine pyrophosphate transport2.55E-04
25GO:0071370: cellular response to gibberellin stimulus2.55E-04
26GO:0006723: cuticle hydrocarbon biosynthetic process2.55E-04
27GO:0000066: mitochondrial ornithine transport2.55E-04
28GO:1902458: positive regulation of stomatal opening2.55E-04
29GO:0009657: plastid organization2.94E-04
30GO:1900865: chloroplast RNA modification4.21E-04
31GO:0030388: fructose 1,6-bisphosphate metabolic process5.64E-04
32GO:0015893: drug transport5.64E-04
33GO:0009662: etioplast organization5.64E-04
34GO:1903426: regulation of reactive oxygen species biosynthetic process5.64E-04
35GO:0009773: photosynthetic electron transport in photosystem I5.68E-04
36GO:0018119: peptidyl-cysteine S-nitrosylation5.68E-04
37GO:0009767: photosynthetic electron transport chain7.37E-04
38GO:0006006: glucose metabolic process7.37E-04
39GO:0006094: gluconeogenesis7.37E-04
40GO:0010207: photosystem II assembly8.30E-04
41GO:0000913: preprophase band assembly9.15E-04
42GO:0031022: nuclear migration along microfilament9.15E-04
43GO:0006000: fructose metabolic process9.15E-04
44GO:0043447: alkane biosynthetic process9.15E-04
45GO:0006696: ergosterol biosynthetic process9.15E-04
46GO:0090351: seedling development9.26E-04
47GO:0055114: oxidation-reduction process9.96E-04
48GO:0006839: mitochondrial transport1.03E-03
49GO:0046902: regulation of mitochondrial membrane permeability1.31E-03
50GO:0009800: cinnamic acid biosynthetic process1.31E-03
51GO:0010731: protein glutathionylation1.31E-03
52GO:0006424: glutamyl-tRNA aminoacylation1.31E-03
53GO:0061077: chaperone-mediated protein folding1.37E-03
54GO:0080092: regulation of pollen tube growth1.50E-03
55GO:0045727: positive regulation of translation1.75E-03
56GO:2000122: negative regulation of stomatal complex development1.75E-03
57GO:0071483: cellular response to blue light1.75E-03
58GO:0009902: chloroplast relocation1.75E-03
59GO:0010037: response to carbon dioxide1.75E-03
60GO:0015976: carbon utilization1.75E-03
61GO:0016123: xanthophyll biosynthetic process2.23E-03
62GO:0006544: glycine metabolic process2.23E-03
63GO:0032543: mitochondrial translation2.23E-03
64GO:0043097: pyrimidine nucleoside salvage2.23E-03
65GO:0006564: L-serine biosynthetic process2.23E-03
66GO:0009904: chloroplast accumulation movement2.23E-03
67GO:0010236: plastoquinone biosynthetic process2.23E-03
68GO:0045038: protein import into chloroplast thylakoid membrane2.23E-03
69GO:0031365: N-terminal protein amino acid modification2.23E-03
70GO:0006461: protein complex assembly2.23E-03
71GO:1902183: regulation of shoot apical meristem development2.23E-03
72GO:0016554: cytidine to uridine editing2.75E-03
73GO:0006559: L-phenylalanine catabolic process2.75E-03
74GO:0006206: pyrimidine nucleobase metabolic process2.75E-03
75GO:0000741: karyogamy2.75E-03
76GO:0006563: L-serine metabolic process2.75E-03
77GO:0042026: protein refolding3.30E-03
78GO:0006458: 'de novo' protein folding3.30E-03
79GO:0017148: negative regulation of translation3.30E-03
80GO:0009903: chloroplast avoidance movement3.30E-03
81GO:0010196: nonphotochemical quenching3.89E-03
82GO:0009645: response to low light intensity stimulus3.89E-03
83GO:0006400: tRNA modification3.89E-03
84GO:0006401: RNA catabolic process3.89E-03
85GO:0010027: thylakoid membrane organization3.97E-03
86GO:0048564: photosystem I assembly4.52E-03
87GO:0008610: lipid biosynthetic process4.52E-03
88GO:0009850: auxin metabolic process4.52E-03
89GO:0009704: de-etiolation4.52E-03
90GO:2000070: regulation of response to water deprivation4.52E-03
91GO:0000105: histidine biosynthetic process4.52E-03
92GO:0009231: riboflavin biosynthetic process4.52E-03
93GO:0006002: fructose 6-phosphate metabolic process5.18E-03
94GO:0071482: cellular response to light stimulus5.18E-03
95GO:0015996: chlorophyll catabolic process5.18E-03
96GO:0007186: G-protein coupled receptor signaling pathway5.18E-03
97GO:0032544: plastid translation5.18E-03
98GO:0017004: cytochrome complex assembly5.18E-03
99GO:0009051: pentose-phosphate shunt, oxidative branch5.86E-03
100GO:0006098: pentose-phosphate shunt5.86E-03
101GO:0090305: nucleic acid phosphodiester bond hydrolysis5.86E-03
102GO:0010206: photosystem II repair5.86E-03
103GO:2000024: regulation of leaf development5.86E-03
104GO:0000373: Group II intron splicing5.86E-03
105GO:0000902: cell morphogenesis5.86E-03
106GO:0009409: response to cold5.90E-03
107GO:0035999: tetrahydrofolate interconversion6.58E-03
108GO:0006535: cysteine biosynthetic process from serine7.33E-03
109GO:0046686: response to cadmium ion7.76E-03
110GO:0019684: photosynthesis, light reaction8.11E-03
111GO:0009089: lysine biosynthetic process via diaminopimelate8.11E-03
112GO:0009073: aromatic amino acid family biosynthetic process8.11E-03
113GO:0006415: translational termination8.11E-03
114GO:0006352: DNA-templated transcription, initiation8.11E-03
115GO:0000272: polysaccharide catabolic process8.11E-03
116GO:0045037: protein import into chloroplast stroma8.92E-03
117GO:0009636: response to toxic substance9.53E-03
118GO:0005986: sucrose biosynthetic process9.75E-03
119GO:0006364: rRNA processing1.14E-02
120GO:0042343: indole glucosinolate metabolic process1.15E-02
121GO:0005985: sucrose metabolic process1.15E-02
122GO:0010025: wax biosynthetic process1.24E-02
123GO:0006636: unsaturated fatty acid biosynthetic process1.24E-02
124GO:0019344: cysteine biosynthetic process1.34E-02
125GO:0009944: polarity specification of adaxial/abaxial axis1.34E-02
126GO:0006096: glycolytic process1.35E-02
127GO:0016575: histone deacetylation1.43E-02
128GO:0006418: tRNA aminoacylation for protein translation1.43E-02
129GO:0009768: photosynthesis, light harvesting in photosystem I1.43E-02
130GO:0098542: defense response to other organism1.53E-02
131GO:0016226: iron-sulfur cluster assembly1.64E-02
132GO:0006730: one-carbon metabolic process1.64E-02
133GO:0042631: cellular response to water deprivation2.07E-02
134GO:0042335: cuticle development2.07E-02
135GO:0080022: primary root development2.07E-02
136GO:0006520: cellular amino acid metabolic process2.18E-02
137GO:0010197: polar nucleus fusion2.18E-02
138GO:0010182: sugar mediated signaling pathway2.18E-02
139GO:0006342: chromatin silencing2.18E-02
140GO:0007018: microtubule-based movement2.29E-02
141GO:0019252: starch biosynthetic process2.41E-02
142GO:0080156: mitochondrial mRNA modification2.53E-02
143GO:0002229: defense response to oomycetes2.53E-02
144GO:0006413: translational initiation2.64E-02
145GO:0016032: viral process2.65E-02
146GO:0048235: pollen sperm cell differentiation2.65E-02
147GO:1901657: glycosyl compound metabolic process2.78E-02
148GO:0007623: circadian rhythm2.83E-02
149GO:0071805: potassium ion transmembrane transport3.03E-02
150GO:0000910: cytokinesis3.16E-02
151GO:0001666: response to hypoxia3.29E-02
152GO:0042742: defense response to bacterium3.38E-02
153GO:0042128: nitrate assimilation3.56E-02
154GO:0009817: defense response to fungus, incompatible interaction3.97E-02
155GO:0018298: protein-chromophore linkage3.97E-02
156GO:0009416: response to light stimulus4.21E-02
157GO:0009407: toxin catabolic process4.26E-02
158GO:0010119: regulation of stomatal movement4.41E-02
159GO:0016051: carbohydrate biosynthetic process4.70E-02
RankGO TermAdjusted P value
1GO:0050281: serine-glyoxylate transaminase activity0.00E+00
2GO:0046608: carotenoid isomerase activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0008859: exoribonuclease II activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0004760: serine-pyruvate transaminase activity0.00E+00
10GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0008974: phosphoribulokinase activity0.00E+00
13GO:0046905: phytoene synthase activity0.00E+00
14GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
15GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
16GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
17GO:0004375: glycine dehydrogenase (decarboxylating) activity2.46E-05
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.46E-05
19GO:0004033: aldo-keto reductase (NADP) activity2.38E-04
20GO:0090422: thiamine pyrophosphate transporter activity2.55E-04
21GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.55E-04
22GO:0009496: plastoquinol--plastocyanin reductase activity2.55E-04
23GO:0052638: indole-3-butyrate beta-glucosyltransferase activity2.55E-04
24GO:0003867: 4-aminobutyrate transaminase activity2.55E-04
25GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.55E-04
26GO:0051996: squalene synthase activity2.55E-04
27GO:0010313: phytochrome binding2.55E-04
28GO:0004424: imidazoleglycerol-phosphate dehydratase activity2.55E-04
29GO:0004832: valine-tRNA ligase activity2.55E-04
30GO:0004617: phosphoglycerate dehydrogenase activity5.64E-04
31GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity5.64E-04
32GO:0004047: aminomethyltransferase activity5.64E-04
33GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.64E-04
34GO:0000064: L-ornithine transmembrane transporter activity5.64E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.64E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.64E-04
37GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.64E-04
38GO:0050017: L-3-cyanoalanine synthase activity5.64E-04
39GO:0010291: carotene beta-ring hydroxylase activity5.64E-04
40GO:0042389: omega-3 fatty acid desaturase activity5.64E-04
41GO:0010297: heteropolysaccharide binding5.64E-04
42GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.64E-04
43GO:0005089: Rho guanyl-nucleotide exchange factor activity5.68E-04
44GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity9.15E-04
45GO:0045548: phenylalanine ammonia-lyase activity9.15E-04
46GO:0032947: protein complex scaffold9.15E-04
47GO:0004148: dihydrolipoyl dehydrogenase activity9.15E-04
48GO:0003935: GTP cyclohydrolase II activity9.15E-04
49GO:0030267: glyoxylate reductase (NADP) activity9.15E-04
50GO:0070402: NADPH binding9.15E-04
51GO:0005528: FK506 binding1.14E-03
52GO:0015079: potassium ion transmembrane transporter activity1.25E-03
53GO:0048027: mRNA 5'-UTR binding1.31E-03
54GO:0048487: beta-tubulin binding1.31E-03
55GO:0016149: translation release factor activity, codon specific1.31E-03
56GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.31E-03
57GO:0005198: structural molecule activity1.39E-03
58GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.46E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity1.75E-03
60GO:0008453: alanine-glyoxylate transaminase activity1.75E-03
61GO:0016987: sigma factor activity1.75E-03
62GO:0001053: plastid sigma factor activity1.75E-03
63GO:0004372: glycine hydroxymethyltransferase activity2.23E-03
64GO:0005471: ATP:ADP antiporter activity2.23E-03
65GO:0080030: methyl indole-3-acetate esterase activity2.75E-03
66GO:0004332: fructose-bisphosphate aldolase activity2.75E-03
67GO:0048038: quinone binding2.75E-03
68GO:0042578: phosphoric ester hydrolase activity2.75E-03
69GO:0005509: calcium ion binding2.77E-03
70GO:0004518: nuclease activity2.94E-03
71GO:0004124: cysteine synthase activity3.30E-03
72GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.30E-03
73GO:0004849: uridine kinase activity3.30E-03
74GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.30E-03
75GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.30E-03
76GO:0008235: metalloexopeptidase activity3.89E-03
77GO:0004564: beta-fructofuranosidase activity4.52E-03
78GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.18E-03
79GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.18E-03
80GO:0003747: translation release factor activity5.86E-03
81GO:0004575: sucrose alpha-glucosidase activity6.58E-03
82GO:0050661: NADP binding7.48E-03
83GO:0015386: potassium:proton antiporter activity8.11E-03
84GO:0004177: aminopeptidase activity8.11E-03
85GO:0044183: protein binding involved in protein folding8.11E-03
86GO:0004364: glutathione transferase activity8.13E-03
87GO:0051537: 2 iron, 2 sulfur cluster binding9.16E-03
88GO:0000175: 3'-5'-exoribonuclease activity9.75E-03
89GO:0004089: carbonate dehydratase activity9.75E-03
90GO:0031072: heat shock protein binding9.75E-03
91GO:0051287: NAD binding1.03E-02
92GO:0008266: poly(U) RNA binding1.06E-02
93GO:0031409: pigment binding1.24E-02
94GO:0004407: histone deacetylase activity1.34E-02
95GO:0051536: iron-sulfur cluster binding1.34E-02
96GO:0043424: protein histidine kinase binding1.43E-02
97GO:0004540: ribonuclease activity1.53E-02
98GO:0004176: ATP-dependent peptidase activity1.53E-02
99GO:0051082: unfolded protein binding1.63E-02
100GO:0003756: protein disulfide isomerase activity1.85E-02
101GO:0004812: aminoacyl-tRNA ligase activity1.95E-02
102GO:0019843: rRNA binding2.05E-02
103GO:0030170: pyridoxal phosphate binding2.27E-02
104GO:0050662: coenzyme binding2.29E-02
105GO:0008483: transaminase activity3.03E-02
106GO:0016597: amino acid binding3.16E-02
107GO:0003743: translation initiation factor activity3.30E-02
108GO:0005506: iron ion binding3.31E-02
109GO:0016168: chlorophyll binding3.42E-02
110GO:0009931: calcium-dependent protein serine/threonine kinase activity3.56E-02
111GO:0102483: scopolin beta-glucosidase activity3.70E-02
112GO:0004683: calmodulin-dependent protein kinase activity3.70E-02
113GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.83E-02
114GO:0008236: serine-type peptidase activity3.83E-02
115GO:0016787: hydrolase activity3.91E-02
116GO:0015238: drug transmembrane transporter activity4.12E-02
117GO:0008168: methyltransferase activity4.20E-02
118GO:0046982: protein heterodimerization activity4.28E-02
119GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.41E-02
120GO:0050897: cobalt ion binding4.41E-02
121GO:0000987: core promoter proximal region sequence-specific DNA binding4.85E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.07E-45
2GO:0009535: chloroplast thylakoid membrane5.25E-21
3GO:0009941: chloroplast envelope4.66E-16
4GO:0009570: chloroplast stroma2.00E-14
5GO:0009543: chloroplast thylakoid lumen3.13E-14
6GO:0009579: thylakoid4.80E-11
7GO:0009534: chloroplast thylakoid6.99E-10
8GO:0009654: photosystem II oxygen evolving complex8.13E-10
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.33E-07
10GO:0019898: extrinsic component of membrane4.67E-07
11GO:0030095: chloroplast photosystem II1.10E-06
12GO:0010319: stromule1.14E-06
13GO:0031977: thylakoid lumen9.15E-06
14GO:0031969: chloroplast membrane1.19E-05
15GO:0005960: glycine cleavage complex2.46E-05
16GO:0009782: photosystem I antenna complex2.55E-04
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.55E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]2.55E-04
19GO:0000427: plastid-encoded plastid RNA polymerase complex5.64E-04
20GO:0042170: plastid membrane5.64E-04
21GO:0010287: plastoglobule5.78E-04
22GO:0048046: apoplast7.84E-04
23GO:0009528: plastid inner membrane9.15E-04
24GO:0005775: vacuolar lumen1.31E-03
25GO:0009527: plastid outer membrane1.75E-03
26GO:0009512: cytochrome b6f complex2.23E-03
27GO:0000178: exosome (RNase complex)2.23E-03
28GO:0009523: photosystem II2.57E-03
29GO:0009533: chloroplast stromal thylakoid3.89E-03
30GO:0005743: mitochondrial inner membrane4.45E-03
31GO:0005759: mitochondrial matrix4.87E-03
32GO:0009707: chloroplast outer membrane5.18E-03
33GO:0009539: photosystem II reaction center5.18E-03
34GO:0016324: apical plasma membrane7.33E-03
35GO:0009508: plastid chromosome9.75E-03
36GO:0030076: light-harvesting complex1.15E-02
37GO:0009532: plastid stroma1.53E-02
38GO:0016020: membrane1.63E-02
39GO:0009706: chloroplast inner membrane1.63E-02
40GO:0005871: kinesin complex1.95E-02
41GO:0000790: nuclear chromatin1.95E-02
42GO:0005623: cell2.10E-02
43GO:0009504: cell plate2.41E-02
44GO:0005694: chromosome2.65E-02
45GO:0009295: nucleoid3.03E-02
46GO:0030529: intracellular ribonucleoprotein complex3.29E-02
47GO:0000932: P-body3.29E-02
48GO:0000325: plant-type vacuole4.41E-02
49GO:0000786: nucleosome4.55E-02
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Gene type



Gene DE type