co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G04040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
2	GO:0010055: atrichoblast differentiation	0.00E+00
3	GO:0043201: response to leucine	0.00E+00
4	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
5	GO:0080052: response to histidine	0.00E+00
6	GO:0046109: uridine biosynthetic process	0.00E+00
7	GO:0046865: terpenoid transport	0.00E+00
8	GO:0080053: response to phenylalanine	0.00E+00
9	GO:0006793: phosphorus metabolic process	0.00E+00
10	GO:0006182: cGMP biosynthetic process	0.00E+00
11	GO:0042742: defense response to bacterium	3.21E-08
12	GO:0006468: protein phosphorylation	3.37E-06
13	GO:0006952: defense response	6.83E-06
14	GO:0009620: response to fungus	1.19E-05
15	GO:0009617: response to bacterium	1.22E-05
16	GO:0071456: cellular response to hypoxia	1.26E-05
17	GO:0006032: chitin catabolic process	4.11E-05
18	GO:0006536: glutamate metabolic process	7.81E-05
19	GO:0009751: response to salicylic acid	1.44E-04
20	GO:0009817: defense response to fungus, incompatible interaction	1.48E-04
21	GO:0016998: cell wall macromolecule catabolic process	2.07E-04
22	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.38E-04
23	GO:0051938: L-glutamate import	3.55E-04
24	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.55E-04
25	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.55E-04
26	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.55E-04
27	GO:0006562: proline catabolic process	3.55E-04
28	GO:0032491: detection of molecule of fungal origin	3.55E-04
29	GO:0032107: regulation of response to nutrient levels	3.55E-04
30	GO:0009636: response to toxic substance	4.08E-04
31	GO:0010120: camalexin biosynthetic process	4.76E-04
32	GO:0010204: defense response signaling pathway, resistance gene-independent	4.76E-04
33	GO:0050832: defense response to fungus	6.57E-04
34	GO:0015802: basic amino acid transport	7.72E-04
35	GO:0009805: coumarin biosynthetic process	7.72E-04
36	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	7.72E-04
37	GO:0002240: response to molecule of oomycetes origin	7.72E-04
38	GO:0044419: interspecies interaction between organisms	7.72E-04
39	GO:0042939: tripeptide transport	7.72E-04
40	GO:0043091: L-arginine import	7.72E-04
41	GO:0051592: response to calcium ion	7.72E-04
42	GO:0080183: response to photooxidative stress	7.72E-04
43	GO:0010133: proline catabolic process to glutamate	7.72E-04
44	GO:0009688: abscisic acid biosynthetic process	7.85E-04
45	GO:0009682: induced systemic resistance	9.04E-04
46	GO:0055114: oxidation-reduction process	1.01E-03
47	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	1.25E-03
48	GO:0015692: lead ion transport	1.25E-03
49	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	1.25E-03
50	GO:0080168: abscisic acid transport	1.25E-03
51	GO:0006556: S-adenosylmethionine biosynthetic process	1.25E-03
52	GO:0034051: negative regulation of plant-type hypersensitive response	1.25E-03
53	GO:0010351: lithium ion transport	1.25E-03
54	GO:0009407: toxin catabolic process	1.34E-03
55	GO:0033169: histone H3-K9 demethylation	1.80E-03
56	GO:0070301: cellular response to hydrogen peroxide	1.80E-03
57	GO:0006537: glutamate biosynthetic process	1.80E-03
58	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.80E-03
59	GO:0006882: cellular zinc ion homeostasis	1.80E-03
60	GO:0046836: glycolipid transport	1.80E-03
61	GO:0019438: aromatic compound biosynthetic process	1.80E-03
62	GO:0007165: signal transduction	1.84E-03
63	GO:0006874: cellular calcium ion homeostasis	2.00E-03
64	GO:0010150: leaf senescence	2.13E-03
65	GO:0003333: amino acid transmembrane transport	2.20E-03
66	GO:0051707: response to other organism	2.21E-03
67	GO:0045227: capsule polysaccharide biosynthetic process	2.42E-03
68	GO:0046345: abscisic acid catabolic process	2.42E-03
69	GO:0033358: UDP-L-arabinose biosynthetic process	2.42E-03
70	GO:1901002: positive regulation of response to salt stress	2.42E-03
71	GO:0042938: dipeptide transport	2.42E-03
72	GO:0032259: methylation	2.50E-03
73	GO:0007166: cell surface receptor signaling pathway	2.61E-03
74	GO:0009753: response to jasmonic acid	3.05E-03
75	GO:0034052: positive regulation of plant-type hypersensitive response	3.09E-03
76	GO:0000304: response to singlet oxygen	3.09E-03
77	GO:0010256: endomembrane system organization	3.82E-03
78	GO:0006555: methionine metabolic process	3.82E-03
79	GO:0002238: response to molecule of fungal origin	3.82E-03
80	GO:0006561: proline biosynthetic process	3.82E-03
81	GO:0010942: positive regulation of cell death	3.82E-03
82	GO:0002229: defense response to oomycetes	4.45E-03
83	GO:0010193: response to ozone	4.45E-03
84	GO:2000067: regulation of root morphogenesis	4.60E-03
85	GO:0071470: cellular response to osmotic stress	4.60E-03
86	GO:0019509: L-methionine salvage from methylthioadenosine	4.60E-03
87	GO:0045926: negative regulation of growth	4.60E-03
88	GO:0010555: response to mannitol	4.60E-03
89	GO:1900056: negative regulation of leaf senescence	5.44E-03
90	GO:0019745: pentacyclic triterpenoid biosynthetic process	5.44E-03
91	GO:0050829: defense response to Gram-negative bacterium	5.44E-03
92	GO:0030026: cellular manganese ion homeostasis	5.44E-03
93	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	5.44E-03
94	GO:0010200: response to chitin	6.06E-03
95	GO:0051607: defense response to virus	6.08E-03
96	GO:0010928: regulation of auxin mediated signaling pathway	6.32E-03
97	GO:0030091: protein repair	6.32E-03
98	GO:0009850: auxin metabolic process	6.32E-03
99	GO:0009615: response to virus	6.44E-03
100	GO:0009627: systemic acquired resistance	7.20E-03
101	GO:0009699: phenylpropanoid biosynthetic process	7.25E-03
102	GO:0007186: G-protein coupled receptor signaling pathway	7.25E-03
103	GO:0009821: alkaloid biosynthetic process	8.22E-03
104	GO:0010112: regulation of systemic acquired resistance	8.22E-03
105	GO:0008219: cell death	8.42E-03
106	GO:0006979: response to oxidative stress	8.61E-03
107	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	9.24E-03
108	GO:0010162: seed dormancy process	1.03E-02
109	GO:0055062: phosphate ion homeostasis	1.03E-02
110	GO:0007064: mitotic sister chromatid cohesion	1.03E-02
111	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.03E-02
112	GO:0009089: lysine biosynthetic process via diaminopimelate	1.14E-02
113	GO:0000272: polysaccharide catabolic process	1.14E-02
114	GO:0009750: response to fructose	1.14E-02
115	GO:0012501: programmed cell death	1.26E-02
116	GO:0002213: defense response to insect	1.26E-02
117	GO:0006626: protein targeting to mitochondrion	1.38E-02
118	GO:2000028: regulation of photoperiodism, flowering	1.38E-02
119	GO:0055046: microgametogenesis	1.38E-02
120	GO:0009718: anthocyanin-containing compound biosynthetic process	1.38E-02
121	GO:0009737: response to abscisic acid	1.41E-02
122	GO:0002237: response to molecule of bacterial origin	1.50E-02
123	GO:0006855: drug transmembrane transport	1.61E-02
124	GO:0009969: xyloglucan biosynthetic process	1.62E-02
125	GO:0009225: nucleotide-sugar metabolic process	1.62E-02
126	GO:0070588: calcium ion transmembrane transport	1.62E-02
127	GO:0042538: hyperosmotic salinity response	1.74E-02
128	GO:0006812: cation transport	1.74E-02
129	GO:0009809: lignin biosynthetic process	1.87E-02
130	GO:0030150: protein import into mitochondrial matrix	1.89E-02
131	GO:0005992: trehalose biosynthetic process	1.89E-02
132	GO:0009723: response to ethylene	2.14E-02
133	GO:0006730: one-carbon metabolic process	2.31E-02
134	GO:0019748: secondary metabolic process	2.31E-02
135	GO:0080167: response to karrikin	2.33E-02
136	GO:0009626: plant-type hypersensitive response	2.35E-02
137	GO:0006012: galactose metabolic process	2.46E-02
138	GO:0009693: ethylene biosynthetic process	2.46E-02
139	GO:0010227: floral organ abscission	2.46E-02
140	GO:0009611: response to wounding	2.54E-02
141	GO:0009561: megagametogenesis	2.61E-02
142	GO:0042391: regulation of membrane potential	2.92E-02
143	GO:0006885: regulation of pH	3.08E-02
144	GO:0048544: recognition of pollen	3.25E-02
145	GO:0006814: sodium ion transport	3.25E-02
146	GO:0042752: regulation of circadian rhythm	3.25E-02
147	GO:0006623: protein targeting to vacuole	3.41E-02
148	GO:0009749: response to glucose	3.41E-02
149	GO:0009851: auxin biosynthetic process	3.41E-02
150	GO:0009845: seed germination	3.60E-02
151	GO:0016042: lipid catabolic process	3.65E-02
152	GO:0016032: viral process	3.75E-02
153	GO:0042744: hydrogen peroxide catabolic process	3.79E-02
154	GO:0071281: cellular response to iron ion	3.93E-02
155	GO:0010252: auxin homeostasis	4.11E-02
156	GO:0016310: phosphorylation	4.60E-02
157	GO:0009607: response to biotic stimulus	4.84E-02
158	GO:0009816: defense response to bacterium, incompatible interaction	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0008843: endochitinase activity	0.00E+00
4	GO:0035885: exochitinase activity	0.00E+00
5	GO:0016301: kinase activity	7.51E-08
6	GO:0004674: protein serine/threonine kinase activity	6.76E-07
7	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	7.73E-07
8	GO:0008171: O-methyltransferase activity	4.11E-05
9	GO:0050660: flavin adenine dinucleotide binding	4.21E-05
10	GO:0004351: glutamate decarboxylase activity	4.39E-05
11	GO:0005496: steroid binding	1.22E-04
12	GO:0005524: ATP binding	1.34E-04
13	GO:0009055: electron carrier activity	1.78E-04
14	GO:0051669: fructan beta-fructosidase activity	3.55E-04
15	GO:0004657: proline dehydrogenase activity	3.55E-04
16	GO:0031219: levanase activity	3.55E-04
17	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.55E-04
18	GO:0031127: alpha-(1,2)-fucosyltransferase activity	3.55E-04
19	GO:0050736: O-malonyltransferase activity	7.72E-04
20	GO:0042937: tripeptide transporter activity	7.72E-04
21	GO:0032454: histone demethylase activity (H3-K9 specific)	7.72E-04
22	GO:0004103: choline kinase activity	7.72E-04
23	GO:0004566: beta-glucuronidase activity	7.72E-04
24	GO:0010297: heteropolysaccharide binding	7.72E-04
25	GO:0004568: chitinase activity	7.85E-04
26	GO:0001664: G-protein coupled receptor binding	1.25E-03
27	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.25E-03
28	GO:0042409: caffeoyl-CoA O-methyltransferase activity	1.25E-03
29	GO:0031683: G-protein beta/gamma-subunit complex binding	1.25E-03
30	GO:0004751: ribose-5-phosphate isomerase activity	1.25E-03
31	GO:0004383: guanylate cyclase activity	1.25E-03
32	GO:0004478: methionine adenosyltransferase activity	1.25E-03
33	GO:0008061: chitin binding	1.47E-03
34	GO:0015189: L-lysine transmembrane transporter activity	1.80E-03
35	GO:0017089: glycolipid transporter activity	1.80E-03
36	GO:0015181: arginine transmembrane transporter activity	1.80E-03
37	GO:0042299: lupeol synthase activity	1.80E-03
38	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.80E-03
39	GO:0004364: glutathione transferase activity	2.10E-03
40	GO:0042936: dipeptide transporter activity	2.42E-03
41	GO:0051861: glycolipid binding	2.42E-03
42	GO:0015369: calcium:proton antiporter activity	2.42E-03
43	GO:0005313: L-glutamate transmembrane transporter activity	2.42E-03
44	GO:0016866: intramolecular transferase activity	2.42E-03
45	GO:0004031: aldehyde oxidase activity	2.42E-03
46	GO:0050302: indole-3-acetaldehyde oxidase activity	2.42E-03
47	GO:0010279: indole-3-acetic acid amido synthetase activity	2.42E-03
48	GO:0009916: alternative oxidase activity	2.42E-03
49	GO:0015368: calcium:cation antiporter activity	2.42E-03
50	GO:0050373: UDP-arabinose 4-epimerase activity	2.42E-03
51	GO:0010294: abscisic acid glucosyltransferase activity	3.09E-03
52	GO:0004040: amidase activity	3.09E-03
53	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	3.09E-03
54	GO:0030246: carbohydrate binding	3.81E-03
55	GO:0047714: galactolipase activity	3.82E-03
56	GO:0004866: endopeptidase inhibitor activity	3.82E-03
57	GO:0045735: nutrient reservoir activity	4.00E-03
58	GO:0051920: peroxiredoxin activity	4.60E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.60E-03
60	GO:0102391: decanoate--CoA ligase activity	4.60E-03
61	GO:0003978: UDP-glucose 4-epimerase activity	4.60E-03
62	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	4.60E-03
63	GO:0005516: calmodulin binding	4.74E-03
64	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	5.44E-03
65	GO:0005085: guanyl-nucleotide exchange factor activity	5.44E-03
66	GO:0004467: long-chain fatty acid-CoA ligase activity	5.44E-03
67	GO:0016209: antioxidant activity	6.32E-03
68	GO:0015491: cation:cation antiporter activity	6.32E-03
69	GO:0004714: transmembrane receptor protein tyrosine kinase activity	6.32E-03
70	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	7.25E-03
71	GO:0030247: polysaccharide binding	7.59E-03
72	GO:0030170: pyridoxal phosphate binding	7.72E-03
73	GO:0046872: metal ion binding	7.76E-03
74	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	8.00E-03
75	GO:0008417: fucosyltransferase activity	8.22E-03
76	GO:0015174: basic amino acid transmembrane transporter activity	9.24E-03
77	GO:0031490: chromatin DNA binding	9.24E-03
78	GO:0016844: strictosidine synthase activity	9.24E-03
79	GO:0030145: manganese ion binding	9.74E-03
80	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.26E-02
81	GO:0015114: phosphate ion transmembrane transporter activity	1.38E-02
82	GO:0005388: calcium-transporting ATPase activity	1.38E-02
83	GO:0015266: protein channel activity	1.38E-02
84	GO:0004022: alcohol dehydrogenase (NAD) activity	1.38E-02
85	GO:0051537: 2 iron, 2 sulfur cluster binding	1.50E-02
86	GO:0030552: cAMP binding	1.62E-02
87	GO:0004867: serine-type endopeptidase inhibitor activity	1.62E-02
88	GO:0030553: cGMP binding	1.62E-02
89	GO:0005217: intracellular ligand-gated ion channel activity	1.62E-02
90	GO:0004970: ionotropic glutamate receptor activity	1.62E-02
91	GO:0004601: peroxidase activity	1.78E-02
92	GO:0001046: core promoter sequence-specific DNA binding	1.89E-02
93	GO:0005216: ion channel activity	2.03E-02
94	GO:0015171: amino acid transmembrane transporter activity	2.07E-02
95	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.43E-02
96	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.43E-02
97	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.61E-02
98	GO:0015035: protein disulfide oxidoreductase activity	2.74E-02
99	GO:0030551: cyclic nucleotide binding	2.92E-02
100	GO:0005451: monovalent cation:proton antiporter activity	2.92E-02
101	GO:0005249: voltage-gated potassium channel activity	2.92E-02
102	GO:0008080: N-acetyltransferase activity	3.08E-02
103	GO:0005199: structural constituent of cell wall	3.08E-02
104	GO:0004871: signal transducer activity	3.09E-02
105	GO:0015299: solute:proton antiporter activity	3.25E-02
106	GO:0019901: protein kinase binding	3.41E-02
107	GO:0015385: sodium:proton antiporter activity	3.93E-02
108	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.27E-02
109	GO:0008483: transaminase activity	4.29E-02
110	GO:0008237: metallopeptidase activity	4.29E-02
111	GO:0051213: dioxygenase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.39E-06
2	GO:0016021: integral component of membrane	3.24E-06
3	GO:0005576: extracellular region	1.51E-04
4	GO:0009530: primary cell wall	1.25E-03
5	GO:0005770: late endosome	3.61E-03
6	GO:0032588: trans-Golgi network membrane	3.82E-03
7	GO:0032580: Golgi cisterna membrane	5.40E-03
8	GO:0031305: integral component of mitochondrial inner membrane	6.32E-03
9	GO:0005618: cell wall	9.43E-03
10	GO:0005765: lysosomal membrane	1.14E-02
11	GO:0070469: respiratory chain	2.03E-02
12	GO:0005834: heterotrimeric G-protein complex	2.35E-02
13	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.61E-02
14	GO:0000785: chromatin	3.75E-02
15	GO:0071944: cell periphery	3.93E-02
16	GO:0048046: apoplast	4.21E-02
17	GO:0043231: intracellular membrane-bounded organelle	4.27E-02
18	GO:0009705: plant-type vacuole membrane	4.58E-02