Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04039

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0017009: protein-phycocyanobilin linkage0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
9GO:0046471: phosphatidylglycerol metabolic process0.00E+00
10GO:0015670: carbon dioxide transport0.00E+00
11GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
12GO:0009773: photosynthetic electron transport in photosystem I9.26E-12
13GO:0009658: chloroplast organization1.32E-06
14GO:0010196: nonphotochemical quenching1.57E-06
15GO:0015979: photosynthesis4.24E-06
16GO:0031022: nuclear migration along microfilament6.12E-06
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.41E-05
18GO:0045727: positive regulation of translation2.61E-05
19GO:0009904: chloroplast accumulation movement4.22E-05
20GO:0009903: chloroplast avoidance movement8.69E-05
21GO:0009642: response to light intensity1.48E-04
22GO:0009704: de-etiolation1.48E-04
23GO:0071482: cellular response to light stimulus1.85E-04
24GO:0032544: plastid translation1.85E-04
25GO:0051180: vitamin transport1.86E-04
26GO:0030974: thiamine pyrophosphate transport1.86E-04
27GO:0051775: response to redox state1.86E-04
28GO:0071277: cellular response to calcium ion1.86E-04
29GO:1904966: positive regulation of vitamin E biosynthetic process1.86E-04
30GO:1904964: positive regulation of phytol biosynthetic process1.86E-04
31GO:0080093: regulation of photorespiration1.86E-04
32GO:0031998: regulation of fatty acid beta-oxidation1.86E-04
33GO:0006810: transport2.13E-04
34GO:0010027: thylakoid membrane organization2.58E-04
35GO:0009735: response to cytokinin2.63E-04
36GO:0010205: photoinhibition2.69E-04
37GO:0055114: oxidation-reduction process3.17E-04
38GO:0018119: peptidyl-cysteine S-nitrosylation3.66E-04
39GO:0018298: protein-chromophore linkage3.68E-04
40GO:0046741: transport of virus in host, tissue to tissue4.19E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process4.19E-04
42GO:0080005: photosystem stoichiometry adjustment4.19E-04
43GO:0015893: drug transport4.19E-04
44GO:0034755: iron ion transmembrane transport4.19E-04
45GO:0097054: L-glutamate biosynthetic process4.19E-04
46GO:0006108: malate metabolic process4.78E-04
47GO:0009853: photorespiration5.00E-04
48GO:0055085: transmembrane transport5.24E-04
49GO:0006636: unsaturated fatty acid biosynthetic process6.69E-04
50GO:0006833: water transport6.69E-04
51GO:0006954: inflammatory response6.84E-04
52GO:0000913: preprophase band assembly6.84E-04
53GO:0009644: response to high light intensity7.60E-04
54GO:0016226: iron-sulfur cluster assembly9.73E-04
55GO:0046653: tetrahydrofolate metabolic process9.77E-04
56GO:0006107: oxaloacetate metabolic process9.77E-04
57GO:0080170: hydrogen peroxide transmembrane transport9.77E-04
58GO:0006537: glutamate biosynthetic process9.77E-04
59GO:0043572: plastid fission9.77E-04
60GO:0046836: glycolipid transport9.77E-04
61GO:0010371: regulation of gibberellin biosynthetic process9.77E-04
62GO:0006020: inositol metabolic process9.77E-04
63GO:0071484: cellular response to light intensity9.77E-04
64GO:0009152: purine ribonucleotide biosynthetic process9.77E-04
65GO:0019464: glycine decarboxylation via glycine cleavage system1.29E-03
66GO:0009765: photosynthesis, light harvesting1.29E-03
67GO:0006109: regulation of carbohydrate metabolic process1.29E-03
68GO:0006546: glycine catabolic process1.29E-03
69GO:0006021: inositol biosynthetic process1.29E-03
70GO:0006734: NADH metabolic process1.29E-03
71GO:0010021: amylopectin biosynthetic process1.29E-03
72GO:0019676: ammonia assimilation cycle1.29E-03
73GO:0042631: cellular response to water deprivation1.34E-03
74GO:0034220: ion transmembrane transport1.34E-03
75GO:0007018: microtubule-based movement1.54E-03
76GO:0016120: carotene biosynthetic process1.65E-03
77GO:0043097: pyrimidine nucleoside salvage1.65E-03
78GO:0010117: photoprotection1.65E-03
79GO:0006564: L-serine biosynthetic process1.65E-03
80GO:0019252: starch biosynthetic process1.65E-03
81GO:0006097: glyoxylate cycle1.65E-03
82GO:0006206: pyrimidine nucleobase metabolic process2.03E-03
83GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.03E-03
84GO:0046855: inositol phosphate dephosphorylation2.03E-03
85GO:0010304: PSII associated light-harvesting complex II catabolic process2.03E-03
86GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.03E-03
87GO:0009058: biosynthetic process2.20E-03
88GO:0009854: oxidative photosynthetic carbon pathway2.43E-03
89GO:0009645: response to low light intensity stimulus2.87E-03
90GO:0006400: tRNA modification2.87E-03
91GO:0009395: phospholipid catabolic process2.87E-03
92GO:0007623: circadian rhythm3.09E-03
93GO:0048564: photosystem I assembly3.32E-03
94GO:0005978: glycogen biosynthetic process3.32E-03
95GO:0009231: riboflavin biosynthetic process3.32E-03
96GO:0006098: pentose-phosphate shunt4.30E-03
97GO:0009821: alkaloid biosynthetic process4.30E-03
98GO:0090305: nucleic acid phosphodiester bond hydrolysis4.30E-03
99GO:0010206: photosystem II repair4.30E-03
100GO:0090333: regulation of stomatal closure4.30E-03
101GO:0000373: Group II intron splicing4.30E-03
102GO:0006099: tricarboxylic acid cycle4.37E-03
103GO:0005982: starch metabolic process4.82E-03
104GO:0008285: negative regulation of cell proliferation5.92E-03
105GO:0043085: positive regulation of catalytic activity5.92E-03
106GO:0006879: cellular iron ion homeostasis5.92E-03
107GO:0000272: polysaccharide catabolic process5.92E-03
108GO:0006790: sulfur compound metabolic process6.51E-03
109GO:0005983: starch catabolic process6.51E-03
110GO:0080167: response to karrikin7.07E-03
111GO:0010628: positive regulation of gene expression7.11E-03
112GO:0006094: gluconeogenesis7.11E-03
113GO:0009767: photosynthetic electron transport chain7.11E-03
114GO:0006364: rRNA processing7.26E-03
115GO:0010020: chloroplast fission7.73E-03
116GO:0019253: reductive pentose-phosphate cycle7.73E-03
117GO:0046854: phosphatidylinositol phosphorylation8.37E-03
118GO:0006096: glycolytic process8.59E-03
119GO:0008299: isoprenoid biosynthetic process1.04E-02
120GO:0007017: microtubule-based process1.04E-02
121GO:0009768: photosynthesis, light harvesting in photosystem I1.04E-02
122GO:0010073: meristem maintenance1.04E-02
123GO:0051302: regulation of cell division1.04E-02
124GO:0031408: oxylipin biosynthetic process1.11E-02
125GO:0030433: ubiquitin-dependent ERAD pathway1.19E-02
126GO:0010227: floral organ abscission1.26E-02
127GO:0008152: metabolic process1.32E-02
128GO:0006817: phosphate ion transport1.34E-02
129GO:0009561: megagametogenesis1.34E-02
130GO:0006520: cellular amino acid metabolic process1.58E-02
131GO:0006662: glycerol ether metabolic process1.58E-02
132GO:0015986: ATP synthesis coupled proton transport1.66E-02
133GO:0042742: defense response to bacterium1.73E-02
134GO:0009791: post-embryonic development1.75E-02
135GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.83E-02
136GO:0000302: response to reactive oxygen species1.83E-02
137GO:0016032: viral process1.92E-02
138GO:0010468: regulation of gene expression2.14E-02
139GO:0000910: cytokinesis2.29E-02
140GO:0016126: sterol biosynthetic process2.38E-02
141GO:0009611: response to wounding2.46E-02
142GO:0042128: nitrate assimilation2.58E-02
143GO:0009409: response to cold2.71E-02
144GO:0030244: cellulose biosynthetic process2.88E-02
145GO:0000160: phosphorelay signal transduction system2.98E-02
146GO:0034599: cellular response to oxidative stress3.51E-02
147GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.56E-02
148GO:0006839: mitochondrial transport3.74E-02
149GO:0009640: photomorphogenesis4.08E-02
150GO:0009744: response to sucrose4.08E-02
151GO:0051707: response to other organism4.08E-02
152GO:0045454: cell redox homeostasis4.12E-02
153GO:0000209: protein polyubiquitination4.19E-02
154GO:0006855: drug transmembrane transport4.55E-02
155GO:0009664: plant-type cell wall organization4.79E-02
RankGO TermAdjusted P value
1GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
6GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
7GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
8GO:0008974: phosphoribulokinase activity0.00E+00
9GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
10GO:0008465: glycerate dehydrogenase activity0.00E+00
11GO:1990534: thermospermine oxidase activity0.00E+00
12GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
13GO:0051738: xanthophyll binding0.00E+00
14GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
15GO:0016168: chlorophyll binding1.68E-05
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.61E-05
17GO:0004176: ATP-dependent peptidase activity5.32E-05
18GO:0016615: malate dehydrogenase activity6.24E-05
19GO:0022891: substrate-specific transmembrane transporter activity7.01E-05
20GO:0030060: L-malate dehydrogenase activity8.69E-05
21GO:0048038: quinone binding1.54E-04
22GO:0090422: thiamine pyrophosphate transporter activity1.86E-04
23GO:0050308: sugar-phosphatase activity1.86E-04
24GO:0009496: plastoquinol--plastocyanin reductase activity1.86E-04
25GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity1.86E-04
26GO:0019203: carbohydrate phosphatase activity1.86E-04
27GO:0005080: protein kinase C binding1.86E-04
28GO:0008746: NAD(P)+ transhydrogenase activity1.86E-04
29GO:0016041: glutamate synthase (ferredoxin) activity1.86E-04
30GO:0004328: formamidase activity1.86E-04
31GO:0035671: enone reductase activity1.86E-04
32GO:0003844: 1,4-alpha-glucan branching enzyme activity4.19E-04
33GO:0008934: inositol monophosphate 1-phosphatase activity4.19E-04
34GO:0052833: inositol monophosphate 4-phosphatase activity4.19E-04
35GO:0008967: phosphoglycolate phosphatase activity4.19E-04
36GO:0010297: heteropolysaccharide binding4.19E-04
37GO:0004617: phosphoglycerate dehydrogenase activity4.19E-04
38GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity4.19E-04
39GO:0052832: inositol monophosphate 3-phosphatase activity4.19E-04
40GO:0008266: poly(U) RNA binding5.38E-04
41GO:0043169: cation binding6.84E-04
42GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity6.84E-04
43GO:0032947: protein complex scaffold6.84E-04
44GO:0003935: GTP cyclohydrolase II activity6.84E-04
45GO:0016742: hydroxymethyl-, formyl- and related transferase activity6.84E-04
46GO:0070402: NADPH binding6.84E-04
47GO:0008864: formyltetrahydrofolate deformylase activity6.84E-04
48GO:0051536: iron-sulfur cluster binding7.41E-04
49GO:0004375: glycine dehydrogenase (decarboxylating) activity9.77E-04
50GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides9.77E-04
51GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity9.77E-04
52GO:0017089: glycolipid transporter activity9.77E-04
53GO:0003777: microtubule motor activity1.13E-03
54GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.29E-03
55GO:0004506: squalene monooxygenase activity1.29E-03
56GO:0009011: starch synthase activity1.29E-03
57GO:0043495: protein anchor1.29E-03
58GO:0051861: glycolipid binding1.29E-03
59GO:0050662: coenzyme binding1.54E-03
60GO:0051538: 3 iron, 4 sulfur cluster binding1.65E-03
61GO:0016787: hydrolase activity1.85E-03
62GO:2001070: starch binding2.03E-03
63GO:0004332: fructose-bisphosphate aldolase activity2.03E-03
64GO:0016491: oxidoreductase activity2.27E-03
65GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.43E-03
66GO:0004849: uridine kinase activity2.43E-03
67GO:0015250: water channel activity2.54E-03
68GO:0019899: enzyme binding2.87E-03
69GO:0043022: ribosome binding3.32E-03
70GO:0015078: hydrogen ion transmembrane transporter activity3.80E-03
71GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water3.80E-03
72GO:0008135: translation factor activity, RNA binding3.80E-03
73GO:0008138: protein tyrosine/serine/threonine phosphatase activity4.30E-03
74GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors4.30E-03
75GO:0005381: iron ion transmembrane transporter activity4.82E-03
76GO:0016844: strictosidine synthase activity4.82E-03
77GO:0008047: enzyme activator activity5.36E-03
78GO:0003824: catalytic activity5.74E-03
79GO:0005215: transporter activity5.81E-03
80GO:0015386: potassium:proton antiporter activity5.92E-03
81GO:0047372: acylglycerol lipase activity5.92E-03
82GO:0015293: symporter activity6.06E-03
83GO:0051287: NAD binding6.52E-03
84GO:0005315: inorganic phosphate transmembrane transporter activity7.11E-03
85GO:0031072: heat shock protein binding7.11E-03
86GO:0008131: primary amine oxidase activity7.73E-03
87GO:0031625: ubiquitin protein ligase binding8.04E-03
88GO:0031409: pigment binding9.03E-03
89GO:0004857: enzyme inhibitor activity9.71E-03
90GO:0015079: potassium ion transmembrane transporter activity1.04E-02
91GO:0019843: rRNA binding1.30E-02
92GO:0046872: metal ion binding1.35E-02
93GO:0047134: protein-disulfide reductase activity1.42E-02
94GO:0004791: thioredoxin-disulfide reductase activity1.66E-02
95GO:0016853: isomerase activity1.66E-02
96GO:0008017: microtubule binding1.88E-02
97GO:0004518: nuclease activity1.92E-02
98GO:0000156: phosphorelay response regulator activity2.01E-02
99GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.01E-02
100GO:0016887: ATPase activity2.02E-02
101GO:0008237: metallopeptidase activity2.19E-02
102GO:0042802: identical protein binding2.28E-02
103GO:0016597: amino acid binding2.29E-02
104GO:0004721: phosphoprotein phosphatase activity2.67E-02
105GO:0016788: hydrolase activity, acting on ester bonds2.83E-02
106GO:0015238: drug transmembrane transporter activity2.98E-02
107GO:0004222: metalloendopeptidase activity3.08E-02
108GO:0030145: manganese ion binding3.19E-02
109GO:0008233: peptidase activity3.39E-02
110GO:0003746: translation elongation factor activity3.40E-02
111GO:0003993: acid phosphatase activity3.51E-02
112GO:0051537: 2 iron, 2 sulfur cluster binding4.31E-02
113GO:0005198: structural molecule activity4.43E-02
114GO:0005525: GTP binding4.44E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009507: chloroplast4.27E-50
4GO:0009535: chloroplast thylakoid membrane2.00E-30
5GO:0009941: chloroplast envelope5.66E-22
6GO:0009534: chloroplast thylakoid6.99E-22
7GO:0009570: chloroplast stroma8.09E-17
8GO:0009579: thylakoid1.21E-13
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.05E-10
10GO:0031969: chloroplast membrane2.73E-06
11GO:0048046: apoplast9.83E-06
12GO:0010287: plastoglobule2.79E-05
13GO:0042651: thylakoid membrane4.57E-05
14GO:0016021: integral component of membrane1.31E-04
15GO:0009523: photosystem II1.40E-04
16GO:0009782: photosystem I antenna complex1.86E-04
17GO:0010319: stromule2.20E-04
18GO:0009543: chloroplast thylakoid lumen3.11E-04
19GO:0000427: plastid-encoded plastid RNA polymerase complex4.19E-04
20GO:0031977: thylakoid lumen6.22E-04
21GO:0016020: membrane6.52E-04
22GO:0005960: glycine cleavage complex9.77E-04
23GO:0005871: kinesin complex1.24E-03
24GO:0009517: PSII associated light-harvesting complex II1.29E-03
25GO:0030286: dynein complex1.29E-03
26GO:0009512: cytochrome b6f complex1.65E-03
27GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.03E-03
28GO:0005623: cell2.13E-03
29GO:0009501: amyloplast3.32E-03
30GO:0030076: light-harvesting complex8.37E-03
31GO:0005875: microtubule associated complex9.03E-03
32GO:0009706: chloroplast inner membrane1.03E-02
33GO:0009654: photosystem II oxygen evolving complex1.04E-02
34GO:0005773: vacuole1.31E-02
35GO:0009504: cell plate1.75E-02
36GO:0019898: extrinsic component of membrane1.75E-02
37GO:0005694: chromosome1.92E-02
38GO:0030529: intracellular ribonucleoprotein complex2.38E-02
39GO:0005777: peroxisome2.85E-02
40GO:0009707: chloroplast outer membrane2.88E-02
41GO:0005874: microtubule3.33E-02
42GO:0005819: spindle3.63E-02
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Gene type



Gene DE type