co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G03750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
4	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
5	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
6	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.53E-06
7	GO:0009773: photosynthetic electron transport in photosystem I	2.95E-05
8	GO:0006636: unsaturated fatty acid biosynthetic process	7.90E-05
9	GO:0016120: carotene biosynthetic process	8.14E-05
10	GO:0015979: photosynthesis	1.81E-04
11	GO:0051180: vitamin transport	2.77E-04
12	GO:0030974: thiamine pyrophosphate transport	2.77E-04
13	GO:0000481: maturation of 5S rRNA	2.77E-04
14	GO:0042371: vitamin K biosynthetic process	2.77E-04
15	GO:0043686: co-translational protein modification	2.77E-04
16	GO:1902458: positive regulation of stomatal opening	2.77E-04
17	GO:0034337: RNA folding	2.77E-04
18	GO:0071588: hydrogen peroxide mediated signaling pathway	2.77E-04
19	GO:0032544: plastid translation	3.32E-04
20	GO:0000902: cell morphogenesis	3.99E-04
21	GO:0010205: photoinhibition	4.74E-04
22	GO:0010115: regulation of abscisic acid biosynthetic process	6.09E-04
23	GO:0015893: drug transport	6.09E-04
24	GO:0034755: iron ion transmembrane transport	6.09E-04
25	GO:0006729: tetrahydrobiopterin biosynthetic process	6.09E-04
26	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.09E-04
27	GO:0018298: protein-chromophore linkage	7.57E-04
28	GO:0055114: oxidation-reduction process	7.96E-04
29	GO:0030036: actin cytoskeleton organization	8.26E-04
30	GO:0010207: photosystem II assembly	9.28E-04
31	GO:0006954: inflammatory response	9.88E-04
32	GO:0006633: fatty acid biosynthetic process	1.06E-03
33	GO:0006833: water transport	1.15E-03
34	GO:0080170: hydrogen peroxide transmembrane transport	1.41E-03
35	GO:0009800: cinnamic acid biosynthetic process	1.41E-03
36	GO:0051016: barbed-end actin filament capping	1.41E-03
37	GO:0006424: glutamyl-tRNA aminoacylation	1.41E-03
38	GO:0055070: copper ion homeostasis	1.41E-03
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.41E-03
40	GO:0071484: cellular response to light intensity	1.41E-03
41	GO:0055085: transmembrane transport	1.63E-03
42	GO:0006183: GTP biosynthetic process	1.89E-03
43	GO:2000122: negative regulation of stomatal complex development	1.89E-03
44	GO:0031122: cytoplasmic microtubule organization	1.89E-03
45	GO:0010037: response to carbon dioxide	1.89E-03
46	GO:0015976: carbon utilization	1.89E-03
47	GO:0009765: photosynthesis, light harvesting	1.89E-03
48	GO:0042335: cuticle development	2.33E-03
49	GO:0034220: ion transmembrane transport	2.33E-03
50	GO:0009658: chloroplast organization	2.37E-03
51	GO:0032543: mitochondrial translation	2.41E-03
52	GO:0006564: L-serine biosynthetic process	2.41E-03
53	GO:0010236: plastoquinone biosynthetic process	2.41E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	2.41E-03
55	GO:0031365: N-terminal protein amino acid modification	2.41E-03
56	GO:0035434: copper ion transmembrane transport	2.41E-03
57	GO:0042254: ribosome biogenesis	2.44E-03
58	GO:0010182: sugar mediated signaling pathway	2.51E-03
59	GO:0006810: transport	2.87E-03
60	GO:0006412: translation	2.95E-03
61	GO:0006559: L-phenylalanine catabolic process	2.98E-03
62	GO:0032973: amino acid export	2.98E-03
63	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.98E-03
64	GO:0010190: cytochrome b6f complex assembly	2.98E-03
65	GO:0000741: karyogamy	2.98E-03
66	GO:0006561: proline biosynthetic process	2.98E-03
67	GO:0010405: arabinogalactan protein metabolic process	2.98E-03
68	GO:0042549: photosystem II stabilization	2.98E-03
69	GO:0016132: brassinosteroid biosynthetic process	3.09E-03
70	GO:0042372: phylloquinone biosynthetic process	3.58E-03
71	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.58E-03
72	GO:1901259: chloroplast rRNA processing	3.58E-03
73	GO:0017148: negative regulation of translation	3.58E-03
74	GO:0006694: steroid biosynthetic process	3.58E-03
75	GO:0030488: tRNA methylation	3.58E-03
76	GO:0010189: vitamin E biosynthetic process	3.58E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	3.58E-03
78	GO:0009955: adaxial/abaxial pattern specification	3.58E-03
79	GO:0051693: actin filament capping	4.23E-03
80	GO:0030497: fatty acid elongation	4.23E-03
81	GO:0010444: guard mother cell differentiation	4.23E-03
82	GO:0006400: tRNA modification	4.23E-03
83	GO:0006401: RNA catabolic process	4.23E-03
84	GO:0009395: phospholipid catabolic process	4.23E-03
85	GO:0043090: amino acid import	4.23E-03
86	GO:0010027: thylakoid membrane organization	4.47E-03
87	GO:0016126: sterol biosynthetic process	4.47E-03
88	GO:0008610: lipid biosynthetic process	4.90E-03
89	GO:0042255: ribosome assembly	4.90E-03
90	GO:0006605: protein targeting	4.90E-03
91	GO:0032508: DNA duplex unwinding	4.90E-03
92	GO:2000070: regulation of response to water deprivation	4.90E-03
93	GO:0045010: actin nucleation	4.90E-03
94	GO:0009231: riboflavin biosynthetic process	4.90E-03
95	GO:0007186: G-protein coupled receptor signaling pathway	5.62E-03
96	GO:0009808: lignin metabolic process	5.62E-03
97	GO:0009699: phenylpropanoid biosynthetic process	5.62E-03
98	GO:0015996: chlorophyll catabolic process	5.62E-03
99	GO:0006098: pentose-phosphate shunt	6.37E-03
100	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.37E-03
101	GO:0010206: photosystem II repair	6.37E-03
102	GO:0080144: amino acid homeostasis	6.37E-03
103	GO:0009051: pentose-phosphate shunt, oxidative branch	6.37E-03
104	GO:0009638: phototropism	7.15E-03
105	GO:0009409: response to cold	7.46E-03
106	GO:0019538: protein metabolic process	7.97E-03
107	GO:0009688: abscisic acid biosynthetic process	7.97E-03
108	GO:0043069: negative regulation of programmed cell death	7.97E-03
109	GO:0019684: photosynthesis, light reaction	8.82E-03
110	GO:0009089: lysine biosynthetic process via diaminopimelate	8.82E-03
111	GO:0006879: cellular iron ion homeostasis	8.82E-03
112	GO:0009750: response to fructose	8.82E-03
113	GO:0000038: very long-chain fatty acid metabolic process	8.82E-03
114	GO:0045037: protein import into chloroplast stroma	9.70E-03
115	GO:0006006: glucose metabolic process	1.06E-02
116	GO:0009718: anthocyanin-containing compound biosynthetic process	1.06E-02
117	GO:0009725: response to hormone	1.06E-02
118	GO:0006094: gluconeogenesis	1.06E-02
119	GO:0009767: photosynthetic electron transport chain	1.06E-02
120	GO:0007015: actin filament organization	1.16E-02
121	GO:0009414: response to water deprivation	1.27E-02
122	GO:0071555: cell wall organization	1.33E-02
123	GO:0010025: wax biosynthetic process	1.35E-02
124	GO:0009416: response to light stimulus	1.42E-02
125	GO:0000027: ribosomal large subunit assembly	1.46E-02
126	GO:0005992: trehalose biosynthetic process	1.46E-02
127	GO:0007017: microtubule-based process	1.56E-02
128	GO:0061077: chaperone-mediated protein folding	1.67E-02
129	GO:0031408: oxylipin biosynthetic process	1.67E-02
130	GO:0016998: cell wall macromolecule catabolic process	1.67E-02
131	GO:0006817: phosphate ion transport	2.01E-02
132	GO:0019722: calcium-mediated signaling	2.01E-02
133	GO:0042127: regulation of cell proliferation	2.01E-02
134	GO:0009306: protein secretion	2.01E-02
135	GO:0006869: lipid transport	2.07E-02
136	GO:0016117: carotenoid biosynthetic process	2.13E-02
137	GO:0010197: polar nucleus fusion	2.37E-02
138	GO:0042744: hydrogen peroxide catabolic process	2.63E-02
139	GO:0005975: carbohydrate metabolic process	2.69E-02
140	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.76E-02
141	GO:0000302: response to reactive oxygen species	2.76E-02
142	GO:0010583: response to cyclopentenone	2.89E-02
143	GO:0032502: developmental process	2.89E-02
144	GO:0010090: trichome morphogenesis	3.02E-02
145	GO:1901657: glycosyl compound metabolic process	3.02E-02
146	GO:0007267: cell-cell signaling	3.30E-02
147	GO:0001666: response to hypoxia	3.58E-02
148	GO:0042128: nitrate assimilation	3.87E-02
149	GO:0015995: chlorophyll biosynthetic process	4.02E-02
150	GO:0010411: xyloglucan metabolic process	4.02E-02
151	GO:0006979: response to oxidative stress	4.07E-02
152	GO:0016311: dephosphorylation	4.17E-02
153	GO:0000160: phosphorelay signal transduction system	4.48E-02
154	GO:0009834: plant-type secondary cell wall biogenesis	4.64E-02
155	GO:0009407: toxin catabolic process	4.64E-02
156	GO:0009826: unidimensional cell growth	4.72E-02
157	GO:0010119: regulation of stomatal movement	4.79E-02
158	GO:0009631: cold acclimation	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
6	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:1990534: thermospermine oxidase activity	0.00E+00
9	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
10	GO:0050614: delta24-sterol reductase activity	0.00E+00
11	GO:0045436: lycopene beta cyclase activity	0.00E+00
12	GO:0008859: exoribonuclease II activity	0.00E+00
13	GO:0019843: rRNA binding	3.46E-08
14	GO:0043495: protein anchor	5.13E-05
15	GO:0022891: substrate-specific transmembrane transporter activity	1.61E-04
16	GO:0019899: enzyme binding	2.13E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.77E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	2.77E-04
19	GO:0008568: microtubule-severing ATPase activity	2.77E-04
20	GO:0042586: peptide deformylase activity	2.77E-04
21	GO:0045485: omega-6 fatty acid desaturase activity	2.77E-04
22	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.77E-04
23	GO:0005080: protein kinase C binding	2.77E-04
24	GO:0004328: formamidase activity	2.77E-04
25	GO:0000248: C-5 sterol desaturase activity	2.77E-04
26	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.77E-04
27	GO:0090422: thiamine pyrophosphate transporter activity	2.77E-04
28	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.32E-04
29	GO:0016168: chlorophyll binding	5.80E-04
30	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.09E-04
31	GO:0042389: omega-3 fatty acid desaturase activity	6.09E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	6.09E-04
33	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.09E-04
34	GO:0003938: IMP dehydrogenase activity	6.09E-04
35	GO:0003735: structural constituent of ribosome	6.27E-04
36	GO:0016531: copper chaperone activity	9.88E-04
37	GO:0019829: cation-transporting ATPase activity	9.88E-04
38	GO:0045548: phenylalanine ammonia-lyase activity	9.88E-04
39	GO:0003935: GTP cyclohydrolase II activity	9.88E-04
40	GO:0005528: FK506 binding	1.27E-03
41	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.41E-03
42	GO:0043023: ribosomal large subunit binding	1.41E-03
43	GO:0001872: (1->3)-beta-D-glucan binding	1.41E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.69E-03
45	GO:0052793: pectin acetylesterase activity	1.89E-03
46	GO:0004506: squalene monooxygenase activity	1.89E-03
47	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.89E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.89E-03
49	GO:0016491: oxidoreductase activity	2.26E-03
50	GO:0009922: fatty acid elongase activity	2.41E-03
51	GO:0004130: cytochrome-c peroxidase activity	2.98E-03
52	GO:0016208: AMP binding	2.98E-03
53	GO:0016688: L-ascorbate peroxidase activity	2.98E-03
54	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.98E-03
55	GO:0004332: fructose-bisphosphate aldolase activity	2.98E-03
56	GO:0004620: phospholipase activity	4.23E-03
57	GO:0015250: water channel activity	4.47E-03
58	GO:0005215: transporter activity	5.02E-03
59	GO:0005375: copper ion transmembrane transporter activity	5.62E-03
60	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.30E-03
61	GO:0005381: iron ion transmembrane transporter activity	7.15E-03
62	GO:0003993: acid phosphatase activity	7.73E-03
63	GO:0004805: trehalose-phosphatase activity	7.97E-03
64	GO:0042802: identical protein binding	8.67E-03
65	GO:0000175: 3'-5'-exoribonuclease activity	1.06E-02
66	GO:0004565: beta-galactosidase activity	1.06E-02
67	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.06E-02
68	GO:0004022: alcohol dehydrogenase (NAD) activity	1.06E-02
69	GO:0005315: inorganic phosphate transmembrane transporter activity	1.06E-02
70	GO:0004089: carbonate dehydratase activity	1.06E-02
71	GO:0031072: heat shock protein binding	1.06E-02
72	GO:0015293: symporter activity	1.07E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	1.14E-02
74	GO:0008131: primary amine oxidase activity	1.16E-02
75	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.16E-02
76	GO:0003690: double-stranded DNA binding	1.34E-02
77	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.35E-02
78	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.35E-02
79	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.35E-02
80	GO:0051536: iron-sulfur cluster binding	1.46E-02
81	GO:0052689: carboxylic ester hydrolase activity	1.66E-02
82	GO:0004540: ribonuclease activity	1.67E-02
83	GO:0004176: ATP-dependent peptidase activity	1.67E-02
84	GO:0030570: pectate lyase activity	1.89E-02
85	GO:0004871: signal transducer activity	1.95E-02
86	GO:0003727: single-stranded RNA binding	2.01E-02
87	GO:0008514: organic anion transmembrane transporter activity	2.01E-02
88	GO:0004872: receptor activity	2.63E-02
89	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.76E-02
90	GO:0048038: quinone binding	2.76E-02
91	GO:0004518: nuclease activity	2.89E-02
92	GO:0000156: phosphorelay response regulator activity	3.02E-02
93	GO:0051015: actin filament binding	3.02E-02
94	GO:0016759: cellulose synthase activity	3.16E-02
95	GO:0005200: structural constituent of cytoskeleton	3.30E-02
96	GO:0016597: amino acid binding	3.44E-02
97	GO:0008289: lipid binding	3.62E-02
98	GO:0102483: scopolin beta-glucosidase activity	4.02E-02
99	GO:0030247: polysaccharide binding	4.02E-02
100	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.02E-02
101	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.17E-02
102	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.33E-02
103	GO:0015238: drug transmembrane transporter activity	4.48E-02
104	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.64E-02
105	GO:0016787: hydrolase activity	4.74E-02
106	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.07E-28
2	GO:0009535: chloroplast thylakoid membrane	1.07E-13
3	GO:0009543: chloroplast thylakoid lumen	1.53E-09
4	GO:0009941: chloroplast envelope	4.85E-09
5	GO:0009570: chloroplast stroma	3.54E-07
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.30E-05
7	GO:0009579: thylakoid	1.32E-05
8	GO:0031969: chloroplast membrane	1.73E-05
9	GO:0009706: chloroplast inner membrane	6.86E-05
10	GO:0042651: thylakoid membrane	1.08E-04
11	GO:0016021: integral component of membrane	1.21E-04
12	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.77E-04
13	GO:0009523: photosystem II	3.05E-04
14	GO:0046658: anchored component of plasma membrane	3.67E-04
15	GO:0009534: chloroplast thylakoid	3.92E-04
16	GO:0042170: plastid membrane	6.09E-04
17	GO:0008290: F-actin capping protein complex	6.09E-04
18	GO:0009528: plastid inner membrane	9.88E-04
19	GO:0031977: thylakoid lumen	1.26E-03
20	GO:0005840: ribosome	1.37E-03
21	GO:0009654: photosystem II oxygen evolving complex	1.40E-03
22	GO:0009527: plastid outer membrane	1.89E-03
23	GO:0000178: exosome (RNase complex)	2.41E-03
24	GO:0031225: anchored component of membrane	2.46E-03
25	GO:0019898: extrinsic component of membrane	2.89E-03
26	GO:0031209: SCAR complex	2.98E-03
27	GO:0045298: tubulin complex	6.37E-03
28	GO:0005763: mitochondrial small ribosomal subunit	6.37E-03
29	GO:0015934: large ribosomal subunit	6.75E-03
30	GO:0016020: membrane	7.65E-03
31	GO:0005884: actin filament	8.82E-03
32	GO:0032040: small-subunit processome	9.70E-03
33	GO:0030095: chloroplast photosystem II	1.16E-02
34	GO:0000312: plastid small ribosomal subunit	1.16E-02
35	GO:0009532: plastid stroma	1.67E-02
36	GO:0005778: peroxisomal membrane	3.30E-02
37	GO:0010319: stromule	3.30E-02
38	GO:0000932: P-body	3.58E-02
39	GO:0009707: chloroplast outer membrane	4.33E-02
40	GO:0022626: cytosolic ribosome	4.61E-02
41	GO:0048046: apoplast	4.80E-02