co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0034337: RNA folding	0.00E+00
6	GO:2000505: regulation of energy homeostasis	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0045014: negative regulation of transcription by glucose	0.00E+00
9	GO:0015979: photosynthesis	2.38E-13
10	GO:0010207: photosystem II assembly	3.50E-10
11	GO:0032544: plastid translation	1.37E-07
12	GO:0015995: chlorophyll biosynthetic process	1.53E-07
13	GO:0010205: photoinhibition	3.35E-07
14	GO:0009735: response to cytokinin	7.76E-07
15	GO:0035304: regulation of protein dephosphorylation	4.02E-06
16	GO:0090391: granum assembly	1.44E-05
17	GO:0051513: regulation of monopolar cell growth	3.21E-05
18	GO:0016024: CDP-diacylglycerol biosynthetic process	4.33E-05
19	GO:0010027: thylakoid membrane organization	5.60E-05
20	GO:0006655: phosphatidylglycerol biosynthetic process	1.32E-04
21	GO:0042549: photosystem II stabilization	1.32E-04
22	GO:0009772: photosynthetic electron transport in photosystem II	2.36E-04
23	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.97E-04
24	GO:0000476: maturation of 4.5S rRNA	2.97E-04
25	GO:0000967: rRNA 5'-end processing	2.97E-04
26	GO:0043266: regulation of potassium ion transport	2.97E-04
27	GO:0010480: microsporocyte differentiation	2.97E-04
28	GO:0031338: regulation of vesicle fusion	2.97E-04
29	GO:0000481: maturation of 5S rRNA	2.97E-04
30	GO:0042371: vitamin K biosynthetic process	2.97E-04
31	GO:2000021: regulation of ion homeostasis	2.97E-04
32	GO:0010028: xanthophyll cycle	2.97E-04
33	GO:0010206: photosystem II repair	4.41E-04
34	GO:0006412: translation	6.05E-04
35	GO:0042254: ribosome biogenesis	6.05E-04
36	GO:0010541: acropetal auxin transport	6.50E-04
37	GO:0018026: peptidyl-lysine monomethylation	6.50E-04
38	GO:0016122: xanthophyll metabolic process	6.50E-04
39	GO:0006568: tryptophan metabolic process	6.50E-04
40	GO:0034470: ncRNA processing	6.50E-04
41	GO:0009773: photosynthetic electron transport in photosystem I	7.02E-04
42	GO:0019684: photosynthesis, light reaction	7.02E-04
43	GO:0009734: auxin-activated signaling pathway	7.92E-04
44	GO:1902448: positive regulation of shade avoidance	1.05E-03
45	GO:0010160: formation of animal organ boundary	1.05E-03
46	GO:0006518: peptide metabolic process	1.05E-03
47	GO:0080055: low-affinity nitrate transport	1.05E-03
48	GO:0045493: xylan catabolic process	1.05E-03
49	GO:0090630: activation of GTPase activity	1.05E-03
50	GO:0006636: unsaturated fatty acid biosynthetic process	1.27E-03
51	GO:0045490: pectin catabolic process	1.42E-03
52	GO:0080170: hydrogen peroxide transmembrane transport	1.51E-03
53	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.51E-03
54	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.51E-03
55	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.51E-03
56	GO:0010306: rhamnogalacturonan II biosynthetic process	1.51E-03
57	GO:1901332: negative regulation of lateral root development	1.51E-03
58	GO:0071484: cellular response to light intensity	1.51E-03
59	GO:0009926: auxin polar transport	1.58E-03
60	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.02E-03
61	GO:0045727: positive regulation of translation	2.02E-03
62	GO:0015994: chlorophyll metabolic process	2.02E-03
63	GO:0030104: water homeostasis	2.02E-03
64	GO:0071369: cellular response to ethylene stimulus	2.02E-03
65	GO:0009664: plant-type cell wall organization	2.11E-03
66	GO:0048443: stamen development	2.20E-03
67	GO:0009306: protein secretion	2.20E-03
68	GO:0042335: cuticle development	2.57E-03
69	GO:0080022: primary root development	2.57E-03
70	GO:0010236: plastoquinone biosynthetic process	2.58E-03
71	GO:0009913: epidermal cell differentiation	3.19E-03
72	GO:0060918: auxin transport	3.19E-03
73	GO:1901259: chloroplast rRNA processing	3.84E-03
74	GO:0042372: phylloquinone biosynthetic process	3.84E-03
75	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.84E-03
76	GO:0017148: negative regulation of translation	3.84E-03
77	GO:0009942: longitudinal axis specification	3.84E-03
78	GO:0009828: plant-type cell wall loosening	4.15E-03
79	GO:0048437: floral organ development	4.53E-03
80	GO:0010196: nonphotochemical quenching	4.53E-03
81	GO:0050829: defense response to Gram-negative bacterium	4.53E-03
82	GO:1900057: positive regulation of leaf senescence	4.53E-03
83	GO:0005978: glycogen biosynthetic process	5.26E-03
84	GO:0046620: regulation of organ growth	5.26E-03
85	GO:0006605: protein targeting	5.26E-03
86	GO:0032508: DNA duplex unwinding	5.26E-03
87	GO:0048564: photosystem I assembly	5.26E-03
88	GO:0010411: xyloglucan metabolic process	5.82E-03
89	GO:0007389: pattern specification process	6.03E-03
90	GO:0009733: response to auxin	6.31E-03
91	GO:0006633: fatty acid biosynthetic process	6.44E-03
92	GO:0009245: lipid A biosynthetic process	6.83E-03
93	GO:0048589: developmental growth	6.83E-03
94	GO:0007623: circadian rhythm	7.26E-03
95	GO:0055062: phosphate ion homeostasis	8.55E-03
96	GO:0006535: cysteine biosynthetic process from serine	8.55E-03
97	GO:0009409: response to cold	9.09E-03
98	GO:0030001: metal ion transport	9.33E-03
99	GO:1903507: negative regulation of nucleic acid-templated transcription	9.46E-03
100	GO:0018119: peptidyl-cysteine S-nitrosylation	9.46E-03
101	GO:0048229: gametophyte development	9.46E-03
102	GO:0010152: pollen maturation	1.04E-02
103	GO:0008361: regulation of cell size	1.04E-02
104	GO:0010588: cotyledon vascular tissue pattern formation	1.14E-02
105	GO:0009718: anthocyanin-containing compound biosynthetic process	1.14E-02
106	GO:0010075: regulation of meristem growth	1.14E-02
107	GO:0010143: cutin biosynthetic process	1.24E-02
108	GO:0010540: basipetal auxin transport	1.24E-02
109	GO:0009934: regulation of meristem structural organization	1.24E-02
110	GO:0009658: chloroplast organization	1.27E-02
111	GO:0071732: cellular response to nitric oxide	1.34E-02
112	GO:0090351: seedling development	1.34E-02
113	GO:0010030: positive regulation of seed germination	1.34E-02
114	GO:0006364: rRNA processing	1.43E-02
115	GO:0000027: ribosomal large subunit assembly	1.56E-02
116	GO:0019344: cysteine biosynthetic process	1.56E-02
117	GO:0009416: response to light stimulus	1.65E-02
118	GO:0007017: microtubule-based process	1.68E-02
119	GO:0016998: cell wall macromolecule catabolic process	1.79E-02
120	GO:0048511: rhythmic process	1.79E-02
121	GO:0035428: hexose transmembrane transport	1.91E-02
122	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.91E-02
123	GO:0042545: cell wall modification	1.98E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.29E-02
125	GO:0034220: ion transmembrane transport	2.42E-02
126	GO:0010087: phloem or xylem histogenesis	2.42E-02
127	GO:0048653: anther development	2.42E-02
128	GO:0042631: cellular response to water deprivation	2.42E-02
129	GO:0009793: embryo development ending in seed dormancy	2.53E-02
130	GO:0009958: positive gravitropism	2.55E-02
131	GO:0010305: leaf vascular tissue pattern formation	2.55E-02
132	GO:0048868: pollen tube development	2.55E-02
133	GO:0046323: glucose import	2.55E-02
134	GO:0009741: response to brassinosteroid	2.55E-02
135	GO:0016042: lipid catabolic process	2.62E-02
136	GO:0015986: ATP synthesis coupled proton transport	2.68E-02
137	GO:0042752: regulation of circadian rhythm	2.68E-02
138	GO:0048825: cotyledon development	2.82E-02
139	GO:0019252: starch biosynthetic process	2.82E-02
140	GO:0042744: hydrogen peroxide catabolic process	2.91E-02
141	GO:0000302: response to reactive oxygen species	2.96E-02
142	GO:0009790: embryo development	2.98E-02
143	GO:0010583: response to cyclopentenone	3.10E-02
144	GO:0030163: protein catabolic process	3.25E-02
145	GO:0071281: cellular response to iron ion	3.25E-02
146	GO:1901657: glycosyl compound metabolic process	3.25E-02
147	GO:0010252: auxin homeostasis	3.39E-02
148	GO:0009639: response to red or far red light	3.39E-02
149	GO:0009567: double fertilization forming a zygote and endosperm	3.39E-02
150	GO:0009627: systemic acquired resistance	4.16E-02
151	GO:0009817: defense response to fungus, incompatible interaction	4.65E-02
152	GO:0042742: defense response to bacterium	4.65E-02
153	GO:0010311: lateral root formation	4.81E-02
154	GO:0010218: response to far red light	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0010242: oxygen evolving activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
6	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
7	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
8	GO:0019843: rRNA binding	9.78E-11
9	GO:0005528: FK506 binding	7.71E-08
10	GO:0016851: magnesium chelatase activity	1.42E-07
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.76E-05
12	GO:0043023: ribosomal large subunit binding	3.21E-05
13	GO:0008266: poly(U) RNA binding	6.46E-05
14	GO:0003735: structural constituent of ribosome	6.82E-05
15	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.32E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.97E-04
17	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.97E-04
18	GO:0045485: omega-6 fatty acid desaturase activity	2.97E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.97E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.97E-04
21	GO:0004312: fatty acid synthase activity	6.50E-04
22	GO:0010329: auxin efflux transmembrane transporter activity	9.08E-04
23	GO:0004751: ribose-5-phosphate isomerase activity	1.05E-03
24	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.05E-03
25	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.05E-03
26	GO:0005509: calcium ion binding	1.29E-03
27	GO:0030570: pectate lyase activity	2.02E-03
28	GO:0009011: starch synthase activity	2.02E-03
29	GO:0009044: xylan 1,4-beta-xylosidase activity	2.02E-03
30	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.02E-03
31	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.02E-03
32	GO:0046556: alpha-L-arabinofuranosidase activity	2.02E-03
33	GO:0004659: prenyltransferase activity	2.02E-03
34	GO:0016279: protein-lysine N-methyltransferase activity	2.02E-03
35	GO:0010011: auxin binding	2.02E-03
36	GO:0017137: Rab GTPase binding	2.58E-03
37	GO:0016788: hydrolase activity, acting on ester bonds	2.85E-03
38	GO:0005515: protein binding	3.05E-03
39	GO:0004130: cytochrome-c peroxidase activity	3.19E-03
40	GO:0031177: phosphopantetheine binding	3.19E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.19E-03
42	GO:0004017: adenylate kinase activity	3.84E-03
43	GO:0000035: acyl binding	3.84E-03
44	GO:0004124: cysteine synthase activity	3.84E-03
45	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.26E-03
46	GO:0016829: lyase activity	5.33E-03
47	GO:0008236: serine-type peptidase activity	6.13E-03
48	GO:0005096: GTPase activator activity	6.78E-03
49	GO:0009672: auxin:proton symporter activity	7.67E-03
50	GO:0015020: glucuronosyltransferase activity	8.55E-03
51	GO:0004712: protein serine/threonine/tyrosine kinase activity	8.94E-03
52	GO:0047372: acylglycerol lipase activity	9.46E-03
53	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.86E-03
54	GO:0003714: transcription corepressor activity	1.56E-02
55	GO:0045330: aspartyl esterase activity	1.58E-02
56	GO:0004707: MAP kinase activity	1.79E-02
57	GO:0033612: receptor serine/threonine kinase binding	1.79E-02
58	GO:0052689: carboxylic ester hydrolase activity	1.89E-02
59	GO:0030599: pectinesterase activity	1.92E-02
60	GO:0016746: transferase activity, transferring acyl groups	2.10E-02
61	GO:0016787: hydrolase activity	2.19E-02
62	GO:0016491: oxidoreductase activity	2.52E-02
63	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.55E-02
64	GO:0010181: FMN binding	2.68E-02
65	GO:0005355: glucose transmembrane transporter activity	2.68E-02
66	GO:0050662: coenzyme binding	2.68E-02
67	GO:0004252: serine-type endopeptidase activity	2.83E-02
68	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.96E-02
69	GO:0003729: mRNA binding	3.09E-02
70	GO:0046910: pectinesterase inhibitor activity	3.28E-02
71	GO:0016791: phosphatase activity	3.39E-02
72	GO:0005525: GTP binding	3.45E-02
73	GO:0005200: structural constituent of cytoskeleton	3.55E-02
74	GO:0015250: water channel activity	3.85E-02
75	GO:0016168: chlorophyll binding	4.00E-02
76	GO:0008375: acetylglucosaminyltransferase activity	4.16E-02
77	GO:0102483: scopolin beta-glucosidase activity	4.32E-02
78	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.32E-02
79	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.65E-02
80	GO:0004222: metalloendopeptidase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	2.16E-42
4	GO:0009570: chloroplast stroma	3.69E-32
5	GO:0009534: chloroplast thylakoid	5.26E-30
6	GO:0009535: chloroplast thylakoid membrane	1.68E-29
7	GO:0009543: chloroplast thylakoid lumen	1.09E-28
8	GO:0009579: thylakoid	1.02E-25
9	GO:0009941: chloroplast envelope	1.80E-25
10	GO:0031977: thylakoid lumen	9.93E-22
11	GO:0030095: chloroplast photosystem II	2.57E-14
12	GO:0009654: photosystem II oxygen evolving complex	1.64E-09
13	GO:0019898: extrinsic component of membrane	2.09E-08
14	GO:0010007: magnesium chelatase complex	2.93E-08
15	GO:0010287: plastoglobule	7.92E-07
16	GO:0005840: ribosome	4.52E-06
17	GO:0009538: photosystem I reaction center	7.70E-06
18	GO:0016020: membrane	1.02E-04
19	GO:0009533: chloroplast stromal thylakoid	2.36E-04
20	GO:0043674: columella	2.97E-04
21	GO:0009515: granal stacked thylakoid	2.97E-04
22	GO:0009295: nucleoid	5.29E-04
23	GO:0030093: chloroplast photosystem I	6.50E-04
24	GO:0032040: small-subunit processome	8.03E-04
25	GO:0031969: chloroplast membrane	8.55E-04
26	GO:0009508: plastid chromosome	9.08E-04
27	GO:0009509: chromoplast	1.05E-03
28	GO:0033281: TAT protein transport complex	1.05E-03
29	GO:0009531: secondary cell wall	1.51E-03
30	GO:0005618: cell wall	1.84E-03
31	GO:0009536: plastid	2.41E-03
32	GO:0055035: plastid thylakoid membrane	2.58E-03
33	GO:0009522: photosystem I	2.98E-03
34	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.19E-03
35	GO:0009523: photosystem II	3.20E-03
36	GO:0042807: central vacuole	4.53E-03
37	GO:0042644: chloroplast nucleoid	6.83E-03
38	GO:0045298: tubulin complex	6.83E-03
39	GO:0008180: COP9 signalosome	6.83E-03
40	GO:0009505: plant-type cell wall	7.82E-03
41	GO:0055028: cortical microtubule	8.55E-03
42	GO:0000312: plastid small ribosomal subunit	1.24E-02
43	GO:0009706: chloroplast inner membrane	2.04E-02
44	GO:0071944: cell periphery	3.25E-02
45	GO:0009705: plant-type vacuole membrane	3.52E-02
46	GO:0010319: stromule	3.55E-02
47	GO:0019005: SCF ubiquitin ligase complex	4.65E-02