co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0098586: cellular response to virus	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
7	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
8	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
9	GO:0009773: photosynthetic electron transport in photosystem I	4.21E-13
10	GO:0015979: photosynthesis	2.69E-05
11	GO:0071484: cellular response to light intensity	2.89E-05
12	GO:0015994: chlorophyll metabolic process	5.21E-05
13	GO:0010021: amylopectin biosynthetic process	5.21E-05
14	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.20E-04
15	GO:0009644: response to high light intensity	2.17E-04
16	GO:0008610: lipid biosynthetic process	2.73E-04
17	GO:0009704: de-etiolation	2.73E-04
18	GO:0070509: calcium ion import	2.80E-04
19	GO:0043953: protein transport by the Tat complex	2.80E-04
20	GO:0007263: nitric oxide mediated signal transduction	2.80E-04
21	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	2.80E-04
22	GO:0071277: cellular response to calcium ion	2.80E-04
23	GO:1904966: positive regulation of vitamin E biosynthetic process	2.80E-04
24	GO:1904964: positive regulation of phytol biosynthetic process	2.80E-04
25	GO:0065002: intracellular protein transmembrane transport	2.80E-04
26	GO:0043686: co-translational protein modification	2.80E-04
27	GO:0019252: starch biosynthetic process	3.11E-04
28	GO:0010206: photosystem II repair	4.05E-04
29	GO:0000373: Group II intron splicing	4.05E-04
30	GO:0010205: photoinhibition	4.79E-04
31	GO:0010027: thylakoid membrane organization	5.49E-04
32	GO:0016122: xanthophyll metabolic process	6.14E-04
33	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.14E-04
34	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.14E-04
35	GO:0046741: transport of virus in host, tissue to tissue	6.14E-04
36	GO:0009915: phloem sucrose loading	6.14E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.14E-04
38	GO:0080005: photosystem stoichiometry adjustment	6.14E-04
39	GO:0034755: iron ion transmembrane transport	6.14E-04
40	GO:0071457: cellular response to ozone	6.14E-04
41	GO:0042939: tripeptide transport	6.14E-04
42	GO:0018298: protein-chromophore linkage	7.69E-04
43	GO:0006094: gluconeogenesis	8.37E-04
44	GO:0010020: chloroplast fission	9.39E-04
45	GO:0016050: vesicle organization	9.96E-04
46	GO:0031022: nuclear migration along microfilament	9.96E-04
47	GO:1902448: positive regulation of shade avoidance	9.96E-04
48	GO:0006000: fructose metabolic process	9.96E-04
49	GO:0006954: inflammatory response	9.96E-04
50	GO:0051604: protein maturation	9.96E-04
51	GO:0046836: glycolipid transport	1.42E-03
52	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.42E-03
53	GO:0010371: regulation of gibberellin biosynthetic process	1.42E-03
54	GO:0009152: purine ribonucleotide biosynthetic process	1.42E-03
55	GO:0046653: tetrahydrofolate metabolic process	1.42E-03
56	GO:0080170: hydrogen peroxide transmembrane transport	1.42E-03
57	GO:0043572: plastid fission	1.42E-03
58	GO:0071486: cellular response to high light intensity	1.91E-03
59	GO:0009765: photosynthesis, light harvesting	1.91E-03
60	GO:0006109: regulation of carbohydrate metabolic process	1.91E-03
61	GO:0045727: positive regulation of translation	1.91E-03
62	GO:0042938: dipeptide transport	1.91E-03
63	GO:0042391: regulation of membrane potential	2.36E-03
64	GO:0031365: N-terminal protein amino acid modification	2.43E-03
65	GO:0071493: cellular response to UV-B	2.43E-03
66	GO:0080110: sporopollenin biosynthetic process	2.43E-03
67	GO:0016120: carotene biosynthetic process	2.43E-03
68	GO:0032543: mitochondrial translation	2.43E-03
69	GO:0010117: photoprotection	2.43E-03
70	GO:0009904: chloroplast accumulation movement	2.43E-03
71	GO:0042549: photosystem II stabilization	3.00E-03
72	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.00E-03
73	GO:0000470: maturation of LSU-rRNA	3.00E-03
74	GO:0016554: cytidine to uridine editing	3.00E-03
75	GO:0009913: epidermal cell differentiation	3.00E-03
76	GO:0010190: cytochrome b6f complex assembly	3.00E-03
77	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.00E-03
78	GO:0009735: response to cytokinin	3.39E-03
79	GO:0055114: oxidation-reduction process	3.51E-03
80	GO:0009903: chloroplast avoidance movement	3.62E-03
81	GO:0010189: vitamin E biosynthetic process	3.62E-03
82	GO:0071805: potassium ion transmembrane transport	4.03E-03
83	GO:1900057: positive regulation of leaf senescence	4.26E-03
84	GO:0009645: response to low light intensity stimulus	4.26E-03
85	GO:0016126: sterol biosynthetic process	4.53E-03
86	GO:0010492: maintenance of shoot apical meristem identity	4.95E-03
87	GO:0016559: peroxisome fission	4.95E-03
88	GO:0048564: photosystem I assembly	4.95E-03
89	GO:0005978: glycogen biosynthetic process	4.95E-03
90	GO:0030091: protein repair	4.95E-03
91	GO:0009642: response to light intensity	4.95E-03
92	GO:0006002: fructose 6-phosphate metabolic process	5.67E-03
93	GO:0019430: removal of superoxide radicals	5.67E-03
94	GO:0032544: plastid translation	5.67E-03
95	GO:0048507: meristem development	6.43E-03
96	GO:0034765: regulation of ion transmembrane transport	6.43E-03
97	GO:0090333: regulation of stomatal closure	6.43E-03
98	GO:0007623: circadian rhythm	6.50E-03
99	GO:0008152: metabolic process	7.05E-03
100	GO:0005982: starch metabolic process	7.22E-03
101	GO:1900865: chloroplast RNA modification	7.22E-03
102	GO:0000038: very long-chain fatty acid metabolic process	8.90E-03
103	GO:0008285: negative regulation of cell proliferation	8.90E-03
104	GO:0043085: positive regulation of catalytic activity	8.90E-03
105	GO:0006879: cellular iron ion homeostasis	8.90E-03
106	GO:0006810: transport	8.96E-03
107	GO:0005983: starch catabolic process	9.79E-03
108	GO:0009718: anthocyanin-containing compound biosynthetic process	1.07E-02
109	GO:0009767: photosynthetic electron transport chain	1.07E-02
110	GO:0005986: sucrose biosynthetic process	1.07E-02
111	GO:0006807: nitrogen compound metabolic process	1.07E-02
112	GO:0010628: positive regulation of gene expression	1.07E-02
113	GO:0009658: chloroplast organization	1.13E-02
114	GO:0009266: response to temperature stimulus	1.17E-02
115	GO:0006541: glutamine metabolic process	1.17E-02
116	GO:0010207: photosystem II assembly	1.17E-02
117	GO:0019253: reductive pentose-phosphate cycle	1.17E-02
118	GO:0005985: sucrose metabolic process	1.26E-02
119	GO:0071732: cellular response to nitric oxide	1.26E-02
120	GO:0006364: rRNA processing	1.31E-02
121	GO:0006833: water transport	1.37E-02
122	GO:0010025: wax biosynthetic process	1.37E-02
123	GO:0006096: glycolytic process	1.55E-02
124	GO:0010073: meristem maintenance	1.58E-02
125	GO:0051302: regulation of cell division	1.58E-02
126	GO:0008299: isoprenoid biosynthetic process	1.58E-02
127	GO:0006418: tRNA aminoacylation for protein translation	1.58E-02
128	GO:0007017: microtubule-based process	1.58E-02
129	GO:0009768: photosynthesis, light harvesting in photosystem I	1.58E-02
130	GO:0016226: iron-sulfur cluster assembly	1.80E-02
131	GO:0035428: hexose transmembrane transport	1.80E-02
132	GO:0010227: floral organ abscission	1.91E-02
133	GO:0009686: gibberellin biosynthetic process	1.91E-02
134	GO:0071369: cellular response to ethylene stimulus	1.91E-02
135	GO:0010584: pollen exine formation	2.03E-02
136	GO:0055085: transmembrane transport	2.07E-02
137	GO:0009409: response to cold	2.27E-02
138	GO:0042335: cuticle development	2.27E-02
139	GO:0034220: ion transmembrane transport	2.27E-02
140	GO:0000413: protein peptidyl-prolyl isomerization	2.27E-02
141	GO:0046323: glucose import	2.39E-02
142	GO:0010268: brassinosteroid homeostasis	2.39E-02
143	GO:0071472: cellular response to salt stress	2.39E-02
144	GO:0006662: glycerol ether metabolic process	2.39E-02
145	GO:0007018: microtubule-based movement	2.52E-02
146	GO:0048544: recognition of pollen	2.52E-02
147	GO:0016132: brassinosteroid biosynthetic process	2.78E-02
148	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.78E-02
149	GO:0000302: response to reactive oxygen species	2.78E-02
150	GO:0016032: viral process	2.91E-02
151	GO:0019761: glucosinolate biosynthetic process	2.91E-02
152	GO:0030163: protein catabolic process	3.05E-02
153	GO:0071281: cellular response to iron ion	3.05E-02
154	GO:0009567: double fertilization forming a zygote and endosperm	3.19E-02
155	GO:0016125: sterol metabolic process	3.19E-02
156	GO:0007166: cell surface receptor signaling pathway	3.68E-02
157	GO:0015995: chlorophyll biosynthetic process	4.06E-02
158	GO:0006979: response to oxidative stress	4.15E-02
159	GO:0000160: phosphorelay signal transduction system	4.52E-02
160	GO:0009416: response to light stimulus	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
4	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0009976: tocopherol cyclase activity	0.00E+00
7	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
8	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
9	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
10	GO:0004823: leucine-tRNA ligase activity	0.00E+00
11	GO:0004506: squalene monooxygenase activity	5.21E-05
12	GO:0009011: starch synthase activity	5.21E-05
13	GO:0005242: inward rectifier potassium channel activity	1.64E-04
14	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.80E-04
15	GO:0035671: enone reductase activity	2.80E-04
16	GO:0050139: nicotinate-N-glucosyltransferase activity	2.80E-04
17	GO:0050308: sugar-phosphatase activity	2.80E-04
18	GO:0051777: ent-kaurenoate oxidase activity	2.80E-04
19	GO:0004856: xylulokinase activity	2.80E-04
20	GO:0042586: peptide deformylase activity	2.80E-04
21	GO:0019203: carbohydrate phosphatase activity	2.80E-04
22	GO:0005080: protein kinase C binding	2.80E-04
23	GO:0008242: omega peptidase activity	2.80E-04
24	GO:0042802: identical protein binding	3.49E-04
25	GO:0016168: chlorophyll binding	5.90E-04
26	GO:0047746: chlorophyllase activity	6.14E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.14E-04
28	GO:0033201: alpha-1,4-glucan synthase activity	6.14E-04
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.14E-04
30	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.14E-04
31	GO:0034722: gamma-glutamyl-peptidase activity	6.14E-04
32	GO:0042937: tripeptide transporter activity	6.14E-04
33	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.96E-04
34	GO:0070402: NADPH binding	9.96E-04
35	GO:0008864: formyltetrahydrofolate deformylase activity	9.96E-04
36	GO:0043169: cation binding	9.96E-04
37	GO:0004373: glycogen (starch) synthase activity	9.96E-04
38	GO:0002161: aminoacyl-tRNA editing activity	9.96E-04
39	GO:0017089: glycolipid transporter activity	1.42E-03
40	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.42E-03
41	GO:0004176: ATP-dependent peptidase activity	1.56E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	1.86E-03
43	GO:0042936: dipeptide transporter activity	1.91E-03
44	GO:0051861: glycolipid binding	1.91E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.91E-03
46	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.91E-03
47	GO:0080032: methyl jasmonate esterase activity	1.91E-03
48	GO:0043495: protein anchor	1.91E-03
49	GO:0030551: cyclic nucleotide binding	2.36E-03
50	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.43E-03
51	GO:0016853: isomerase activity	2.73E-03
52	GO:0050662: coenzyme binding	2.73E-03
53	GO:2001070: starch binding	3.00E-03
54	GO:0004332: fructose-bisphosphate aldolase activity	3.00E-03
55	GO:0004784: superoxide dismutase activity	3.00E-03
56	GO:0042578: phosphoric ester hydrolase activity	3.00E-03
57	GO:0048038: quinone binding	3.14E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.62E-03
59	GO:0005261: cation channel activity	3.62E-03
60	GO:0008237: metallopeptidase activity	4.03E-03
61	GO:0019899: enzyme binding	4.26E-03
62	GO:0004620: phospholipase activity	4.26E-03
63	GO:0043022: ribosome binding	4.95E-03
64	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.43E-03
65	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.43E-03
66	GO:0004222: metalloendopeptidase activity	6.51E-03
67	GO:0016787: hydrolase activity	6.68E-03
68	GO:0005381: iron ion transmembrane transporter activity	7.22E-03
69	GO:0008047: enzyme activator activity	8.04E-03
70	GO:0005262: calcium channel activity	1.07E-02
71	GO:0004565: beta-galactosidase activity	1.07E-02
72	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.13E-02
73	GO:0008266: poly(U) RNA binding	1.17E-02
74	GO:0008131: primary amine oxidase activity	1.17E-02
75	GO:0030552: cAMP binding	1.26E-02
76	GO:0030553: cGMP binding	1.26E-02
77	GO:0031409: pigment binding	1.37E-02
78	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.37E-02
79	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.37E-02
80	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.37E-02
81	GO:0003777: microtubule motor activity	1.45E-02
82	GO:0051536: iron-sulfur cluster binding	1.47E-02
83	GO:0004857: enzyme inhibitor activity	1.47E-02
84	GO:0005528: FK506 binding	1.47E-02
85	GO:0043424: protein histidine kinase binding	1.58E-02
86	GO:0005216: ion channel activity	1.58E-02
87	GO:0015079: potassium ion transmembrane transporter activity	1.58E-02
88	GO:0003824: catalytic activity	1.59E-02
89	GO:0003723: RNA binding	2.06E-02
90	GO:0047134: protein-disulfide reductase activity	2.15E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	2.15E-02
92	GO:0016491: oxidoreductase activity	2.17E-02
93	GO:0005249: voltage-gated potassium channel activity	2.27E-02
94	GO:0019843: rRNA binding	2.34E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	2.52E-02
96	GO:0005355: glucose transmembrane transporter activity	2.52E-02
97	GO:0004518: nuclease activity	2.91E-02
98	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.01E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.05E-02
100	GO:0000156: phosphorelay response regulator activity	3.05E-02
101	GO:0008483: transaminase activity	3.33E-02
102	GO:0008017: microtubule binding	3.37E-02
103	GO:0015250: water channel activity	3.62E-02
104	GO:0051213: dioxygenase activity	3.62E-02
105	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.09E-02
106	GO:0016887: ATPase activity	4.19E-02
107	GO:0008236: serine-type peptidase activity	4.21E-02
108	GO:0005515: protein binding	4.60E-02
109	GO:0005215: transporter activity	4.73E-02
110	GO:0030145: manganese ion binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	8.06E-41
4	GO:0009535: chloroplast thylakoid membrane	2.55E-26
5	GO:0009534: chloroplast thylakoid	6.17E-22
6	GO:0009941: chloroplast envelope	2.16E-14
7	GO:0009570: chloroplast stroma	9.47E-14
8	GO:0009579: thylakoid	1.47E-09
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.79E-07
10	GO:0010287: plastoglobule	9.33E-06
11	GO:0016021: integral component of membrane	3.63E-05
12	GO:0042651: thylakoid membrane	1.10E-04
13	GO:0009543: chloroplast thylakoid lumen	1.14E-04
14	GO:0031977: thylakoid lumen	1.65E-04
15	GO:0009501: amyloplast	2.73E-04
16	GO:0031361: integral component of thylakoid membrane	2.80E-04
17	GO:0009782: photosystem I antenna complex	2.80E-04
18	GO:0033281: TAT protein transport complex	9.96E-04
19	GO:0030286: dynein complex	1.91E-03
20	GO:0009526: plastid envelope	1.91E-03
21	GO:0055035: plastid thylakoid membrane	2.43E-03
22	GO:0009523: photosystem II	2.93E-03
23	GO:0009706: chloroplast inner membrane	3.24E-03
24	GO:0010319: stromule	4.03E-03
25	GO:0009533: chloroplast stromal thylakoid	4.26E-03
26	GO:0009707: chloroplast outer membrane	5.91E-03
27	GO:0008180: COP9 signalosome	6.43E-03
28	GO:0009508: plastid chromosome	1.07E-02
29	GO:0030076: light-harvesting complex	1.26E-02
30	GO:0005875: microtubule associated complex	1.37E-02
31	GO:0031969: chloroplast membrane	1.49E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.58E-02
33	GO:0005871: kinesin complex	2.15E-02
34	GO:0005623: cell	2.40E-02
35	GO:0016020: membrane	2.62E-02
36	GO:0019898: extrinsic component of membrane	2.65E-02
37	GO:0009295: nucleoid	3.33E-02
38	GO:0005887: integral component of plasma membrane	3.56E-02
39	GO:0030529: intracellular ribonucleoprotein complex	3.62E-02
40	GO:0019005: SCF ubiquitin ligase complex	4.37E-02