Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G74880

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046471: phosphatidylglycerol metabolic process0.00E+00
2GO:0006982: response to lipid hydroperoxide0.00E+00
3GO:0010335: response to non-ionic osmotic stress0.00E+00
4GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:0090393: sepal giant cell development0.00E+00
10GO:0090042: tubulin deacetylation0.00E+00
11GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
12GO:0009773: photosynthetic electron transport in photosystem I4.15E-09
13GO:0019464: glycine decarboxylation via glycine cleavage system2.52E-07
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.31E-05
15GO:0006094: gluconeogenesis3.48E-05
16GO:0005986: sucrose biosynthetic process3.48E-05
17GO:0009902: chloroplast relocation4.19E-05
18GO:0006546: glycine catabolic process4.19E-05
19GO:0006021: inositol biosynthetic process4.19E-05
20GO:0009658: chloroplast organization5.14E-05
21GO:0009853: photorespiration8.70E-05
22GO:0006810: transport1.62E-04
23GO:0009704: de-etiolation2.25E-04
24GO:0048564: photosystem I assembly2.25E-04
25GO:0019252: starch biosynthetic process2.42E-04
26GO:0009791: post-embryonic development2.42E-04
27GO:0051775: response to redox state2.46E-04
28GO:0071277: cellular response to calcium ion2.46E-04
29GO:0006659: phosphatidylserine biosynthetic process2.46E-04
30GO:0080093: regulation of photorespiration2.46E-04
31GO:0031998: regulation of fatty acid beta-oxidation2.46E-04
32GO:0010362: negative regulation of anion channel activity by blue light2.46E-04
33GO:0051180: vitamin transport2.46E-04
34GO:0009443: pyridoxal 5'-phosphate salvage2.46E-04
35GO:0030974: thiamine pyrophosphate transport2.46E-04
36GO:0046900: tetrahydrofolylpolyglutamate metabolic process2.46E-04
37GO:0006098: pentose-phosphate shunt3.36E-04
38GO:0018119: peptidyl-cysteine S-nitrosylation5.39E-04
39GO:0097054: L-glutamate biosynthetic process5.44E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process5.44E-04
41GO:0030388: fructose 1,6-bisphosphate metabolic process5.44E-04
42GO:0010275: NAD(P)H dehydrogenase complex assembly5.44E-04
43GO:0042819: vitamin B6 biosynthetic process5.44E-04
44GO:0080005: photosystem stoichiometry adjustment5.44E-04
45GO:1902326: positive regulation of chlorophyll biosynthetic process5.44E-04
46GO:0015893: drug transport5.44E-04
47GO:0034755: iron ion transmembrane transport5.44E-04
48GO:0009735: response to cytokinin6.05E-04
49GO:0018298: protein-chromophore linkage6.09E-04
50GO:0046686: response to cadmium ion6.90E-04
51GO:0006108: malate metabolic process7.00E-04
52GO:0019253: reductive pentose-phosphate cycle7.88E-04
53GO:0055114: oxidation-reduction process7.90E-04
54GO:0005977: glycogen metabolic process8.83E-04
55GO:0006011: UDP-glucose metabolic process8.83E-04
56GO:0045910: negative regulation of DNA recombination8.83E-04
57GO:0000913: preprophase band assembly8.83E-04
58GO:0031022: nuclear migration along microfilament8.83E-04
59GO:0006000: fructose metabolic process8.83E-04
60GO:0006954: inflammatory response8.83E-04
61GO:0007623: circadian rhythm9.41E-04
62GO:0009768: photosynthesis, light harvesting in photosystem I1.19E-03
63GO:0032877: positive regulation of DNA endoreduplication1.26E-03
64GO:0046836: glycolipid transport1.26E-03
65GO:0006020: inositol metabolic process1.26E-03
66GO:0006107: oxaloacetate metabolic process1.26E-03
67GO:0006537: glutamate biosynthetic process1.26E-03
68GO:0009800: cinnamic acid biosynthetic process1.26E-03
69GO:0008615: pyridoxine biosynthetic process1.26E-03
70GO:0010731: protein glutathionylation1.26E-03
71GO:0042823: pyridoxal phosphate biosynthetic process1.26E-03
72GO:0016226: iron-sulfur cluster assembly1.42E-03
73GO:0006734: NADH metabolic process1.68E-03
74GO:0010021: amylopectin biosynthetic process1.68E-03
75GO:0019676: ammonia assimilation cycle1.68E-03
76GO:0045727: positive regulation of translation1.68E-03
77GO:0015994: chlorophyll metabolic process1.68E-03
78GO:0042631: cellular response to water deprivation1.97E-03
79GO:0006520: cellular amino acid metabolic process2.12E-03
80GO:0009904: chloroplast accumulation movement2.15E-03
81GO:0043097: pyrimidine nucleoside salvage2.15E-03
82GO:0006097: glyoxylate cycle2.15E-03
83GO:0009247: glycolipid biosynthetic process2.15E-03
84GO:0080110: sporopollenin biosynthetic process2.15E-03
85GO:0016120: carotene biosynthetic process2.15E-03
86GO:0006544: glycine metabolic process2.15E-03
87GO:0009646: response to absence of light2.27E-03
88GO:0046855: inositol phosphate dephosphorylation2.65E-03
89GO:0010942: positive regulation of cell death2.65E-03
90GO:0006563: L-serine metabolic process2.65E-03
91GO:0010304: PSII associated light-harvesting complex II catabolic process2.65E-03
92GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.65E-03
93GO:0006559: L-phenylalanine catabolic process2.65E-03
94GO:0006206: pyrimidine nucleobase metabolic process2.65E-03
95GO:0046777: protein autophosphorylation2.80E-03
96GO:0009416: response to light stimulus2.85E-03
97GO:0030163: protein catabolic process2.97E-03
98GO:0015979: photosynthesis3.09E-03
99GO:1901259: chloroplast rRNA processing3.18E-03
100GO:0009903: chloroplast avoidance movement3.18E-03
101GO:0009854: oxidative photosynthetic carbon pathway3.18E-03
102GO:0042026: protein refolding3.18E-03
103GO:0006458: 'de novo' protein folding3.18E-03
104GO:0010196: nonphotochemical quenching3.75E-03
105GO:0009645: response to low light intensity stimulus3.75E-03
106GO:0010027: thylakoid membrane organization3.76E-03
107GO:0052543: callose deposition in cell wall4.35E-03
108GO:0005978: glycogen biosynthetic process4.35E-03
109GO:0019375: galactolipid biosynthetic process4.35E-03
110GO:0032544: plastid translation4.98E-03
111GO:0006002: fructose 6-phosphate metabolic process4.98E-03
112GO:0071482: cellular response to light stimulus4.98E-03
113GO:0009657: plastid organization4.98E-03
114GO:0000373: Group II intron splicing5.65E-03
115GO:0009821: alkaloid biosynthetic process5.65E-03
116GO:0010206: photosystem II repair5.65E-03
117GO:0090333: regulation of stomatal closure5.65E-03
118GO:0009637: response to blue light6.21E-03
119GO:0005982: starch metabolic process6.33E-03
120GO:0010205: photoinhibition6.33E-03
121GO:0009638: phototropism6.33E-03
122GO:0035999: tetrahydrofolate interconversion6.33E-03
123GO:1900865: chloroplast RNA modification6.33E-03
124GO:0006099: tricarboxylic acid cycle6.50E-03
125GO:0045036: protein targeting to chloroplast7.06E-03
126GO:0006298: mismatch repair7.06E-03
127GO:0006415: translational termination7.80E-03
128GO:0000272: polysaccharide catabolic process7.80E-03
129GO:0006879: cellular iron ion homeostasis7.80E-03
130GO:0006790: sulfur compound metabolic process8.58E-03
131GO:0006855: drug transmembrane transport9.36E-03
132GO:0009767: photosynthetic electron transport chain9.38E-03
133GO:0010628: positive regulation of gene expression9.38E-03
134GO:0042742: defense response to bacterium9.79E-03
135GO:0010207: photosystem II assembly1.02E-02
136GO:0006541: glutamine metabolic process1.02E-02
137GO:0046854: phosphatidylinositol phosphorylation1.11E-02
138GO:0042343: indole glucosinolate metabolic process1.11E-02
139GO:0009611: response to wounding1.13E-02
140GO:0080167: response to karrikin1.17E-02
141GO:0006636: unsaturated fatty acid biosynthetic process1.20E-02
142GO:0006096: glycolytic process1.28E-02
143GO:0016575: histone deacetylation1.38E-02
144GO:0007017: microtubule-based process1.38E-02
145GO:0098542: defense response to other organism1.47E-02
146GO:0061077: chaperone-mediated protein folding1.47E-02
147GO:0006730: one-carbon metabolic process1.57E-02
148GO:0080092: regulation of pollen tube growth1.57E-02
149GO:0030433: ubiquitin-dependent ERAD pathway1.57E-02
150GO:0009409: response to cold1.65E-02
151GO:0010584: pollen exine formation1.77E-02
152GO:0032259: methylation1.82E-02
153GO:0016117: carotenoid biosynthetic process1.88E-02
154GO:0010118: stomatal movement1.99E-02
155GO:0005975: carbohydrate metabolic process2.01E-02
156GO:0009058: biosynthetic process2.04E-02
157GO:0009741: response to brassinosteroid2.09E-02
158GO:0015986: ATP synthesis coupled proton transport2.21E-02
159GO:0007018: microtubule-based movement2.21E-02
160GO:0006814: sodium ion transport2.21E-02
161GO:0008654: phospholipid biosynthetic process2.32E-02
162GO:0080156: mitochondrial mRNA modification2.43E-02
163GO:0002229: defense response to oomycetes2.43E-02
164GO:0032502: developmental process2.55E-02
165GO:0016032: viral process2.55E-02
166GO:0000910: cytokinesis3.04E-02
167GO:0001666: response to hypoxia3.16E-02
168GO:0010468: regulation of gene expression3.19E-02
169GO:0009816: defense response to bacterium, incompatible interaction3.29E-02
170GO:0009817: defense response to fungus, incompatible interaction3.82E-02
171GO:0000160: phosphorelay signal transduction system3.96E-02
172GO:0010218: response to far red light4.10E-02
173GO:0016051: carbohydrate biosynthetic process4.52E-02
174GO:0006839: mitochondrial transport4.96E-02
RankGO TermAdjusted P value
1GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
2GO:0008465: glycerate dehydrogenase activity0.00E+00
3GO:0051738: xanthophyll binding0.00E+00
4GO:0050281: serine-glyoxylate transaminase activity0.00E+00
5GO:0016719: carotene 7,8-desaturase activity0.00E+00
6GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
7GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
10GO:0051721: protein phosphatase 2A binding0.00E+00
11GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
12GO:0042903: tubulin deacetylase activity0.00E+00
13GO:0043014: alpha-tubulin binding0.00E+00
14GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
15GO:0008974: phosphoribulokinase activity0.00E+00
16GO:0004760: serine-pyruvate transaminase activity0.00E+00
17GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
18GO:0050307: sucrose-phosphate phosphatase activity1.02E-05
19GO:0004375: glycine dehydrogenase (decarboxylating) activity2.31E-05
20GO:0051861: glycolipid binding4.19E-05
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.19E-05
22GO:0016615: malate dehydrogenase activity9.77E-05
23GO:0004332: fructose-bisphosphate aldolase activity9.77E-05
24GO:0016491: oxidoreductase activity1.15E-04
25GO:0030060: L-malate dehydrogenase activity1.34E-04
26GO:0004033: aldo-keto reductase (NADP) activity2.25E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.46E-04
28GO:0008746: NAD(P)+ transhydrogenase activity2.46E-04
29GO:0016041: glutamate synthase (ferredoxin) activity2.46E-04
30GO:0030941: chloroplast targeting sequence binding2.46E-04
31GO:0090422: thiamine pyrophosphate transporter activity2.46E-04
32GO:0070006: metalloaminopeptidase activity2.46E-04
33GO:0003867: 4-aminobutyrate transaminase activity2.46E-04
34GO:0008242: omega peptidase activity2.46E-04
35GO:0048038: quinone binding2.66E-04
36GO:0016168: chlorophyll binding4.66E-04
37GO:0008967: phosphoglycolate phosphatase activity5.44E-04
38GO:0010297: heteropolysaccharide binding5.44E-04
39GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.44E-04
40GO:0052832: inositol monophosphate 3-phosphatase activity5.44E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.44E-04
42GO:0003844: 1,4-alpha-glucan branching enzyme activity5.44E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity5.44E-04
44GO:0052833: inositol monophosphate 4-phosphatase activity5.44E-04
45GO:0034722: gamma-glutamyl-peptidase activity5.44E-04
46GO:0004512: inositol-3-phosphate synthase activity5.44E-04
47GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity5.44E-04
48GO:0004222: metalloendopeptidase activity6.90E-04
49GO:0008266: poly(U) RNA binding7.88E-04
50GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity8.83E-04
51GO:0070402: NADPH binding8.83E-04
52GO:0043169: cation binding8.83E-04
53GO:0045548: phenylalanine ammonia-lyase activity8.83E-04
54GO:0032947: protein complex scaffold8.83E-04
55GO:0004148: dihydrolipoyl dehydrogenase activity8.83E-04
56GO:0031409: pigment binding9.77E-04
57GO:0051536: iron-sulfur cluster binding1.08E-03
58GO:0009882: blue light photoreceptor activity1.26E-03
59GO:0008508: bile acid:sodium symporter activity1.26E-03
60GO:0017089: glycolipid transporter activity1.26E-03
61GO:0035250: UDP-galactosyltransferase activity1.26E-03
62GO:0048487: beta-tubulin binding1.26E-03
63GO:0016149: translation release factor activity, codon specific1.26E-03
64GO:0008453: alanine-glyoxylate transaminase activity1.68E-03
65GO:0009011: starch synthase activity1.68E-03
66GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.68E-03
67GO:0051538: 3 iron, 4 sulfur cluster binding2.15E-03
68GO:0008374: O-acyltransferase activity2.15E-03
69GO:0004372: glycine hydroxymethyltransferase activity2.15E-03
70GO:0050662: coenzyme binding2.27E-03
71GO:0042578: phosphoric ester hydrolase activity2.65E-03
72GO:0030983: mismatched DNA binding2.65E-03
73GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.18E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.18E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.18E-03
76GO:0004849: uridine kinase activity3.18E-03
77GO:0043022: ribosome binding4.35E-03
78GO:0008135: translation factor activity, RNA binding4.98E-03
79GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.98E-03
80GO:0015078: hydrogen ion transmembrane transporter activity4.98E-03
81GO:0015238: drug transmembrane transporter activity5.15E-03
82GO:0003747: translation release factor activity5.65E-03
83GO:0016844: strictosidine synthase activity6.33E-03
84GO:0005381: iron ion transmembrane transporter activity6.33E-03
85GO:0004177: aminopeptidase activity7.80E-03
86GO:0044183: protein binding involved in protein folding7.80E-03
87GO:0047372: acylglycerol lipase activity7.80E-03
88GO:0005089: Rho guanyl-nucleotide exchange factor activity7.80E-03
89GO:0015386: potassium:proton antiporter activity7.80E-03
90GO:0004860: protein kinase inhibitor activity7.80E-03
91GO:0008168: methyltransferase activity8.50E-03
92GO:0005198: structural molecule activity9.01E-03
93GO:0004089: carbonate dehydratase activity9.38E-03
94GO:0031072: heat shock protein binding9.38E-03
95GO:0000155: phosphorelay sensor kinase activity9.38E-03
96GO:0003824: catalytic activity1.15E-02
97GO:0003777: microtubule motor activity1.20E-02
98GO:0004407: histone deacetylase activity1.29E-02
99GO:0016787: hydrolase activity1.29E-02
100GO:0043424: protein histidine kinase binding1.38E-02
101GO:0015079: potassium ion transmembrane transporter activity1.38E-02
102GO:0004176: ATP-dependent peptidase activity1.47E-02
103GO:0051082: unfolded protein binding1.54E-02
104GO:0022891: substrate-specific transmembrane transporter activity1.67E-02
105GO:0003756: protein disulfide isomerase activity1.77E-02
106GO:0019843: rRNA binding1.94E-02
107GO:0008080: N-acetyltransferase activity2.09E-02
108GO:0010181: FMN binding2.21E-02
109GO:0015297: antiporter activity2.55E-02
110GO:0003684: damaged DNA binding2.79E-02
111GO:0008237: metallopeptidase activity2.91E-02
112GO:0016887: ATPase activity3.33E-02
113GO:0009931: calcium-dependent protein serine/threonine kinase activity3.42E-02
114GO:0004683: calmodulin-dependent protein kinase activity3.55E-02
115GO:0005215: transporter activity3.61E-02
116GO:0000287: magnesium ion binding4.05E-02
117GO:0016788: hydrolase activity, acting on ester bonds4.21E-02
118GO:0050897: cobalt ion binding4.24E-02
119GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.24E-02
120GO:0003746: translation elongation factor activity4.52E-02
121GO:0050660: flavin adenine dinucleotide binding4.76E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009507: chloroplast9.55E-47
5GO:0009570: chloroplast stroma9.42E-20
6GO:0009941: chloroplast envelope1.57E-19
7GO:0009535: chloroplast thylakoid membrane8.79E-18
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.15E-14
9GO:0009534: chloroplast thylakoid1.43E-13
10GO:0009579: thylakoid7.10E-08
11GO:0048046: apoplast4.23E-07
12GO:0010287: plastoglobule5.45E-06
13GO:0005960: glycine cleavage complex2.31E-05
14GO:0009344: nitrite reductase complex [NAD(P)H]2.46E-04
15GO:0009782: photosystem I antenna complex2.46E-04
16GO:0010319: stromule3.73E-04
17GO:0031969: chloroplast membrane5.26E-04
18GO:0000427: plastid-encoded plastid RNA polymerase complex5.44E-04
19GO:0030076: light-harvesting complex8.79E-04
20GO:0009509: chromoplast8.83E-04
21GO:0030286: dynein complex1.68E-03
22GO:0009517: PSII associated light-harvesting complex II1.68E-03
23GO:0009523: photosystem II2.44E-03
24GO:0009706: chloroplast inner membrane2.56E-03
25GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.65E-03
26GO:0009543: chloroplast thylakoid lumen3.40E-03
27GO:0016020: membrane3.70E-03
28GO:0031359: integral component of chloroplast outer membrane3.75E-03
29GO:0009501: amyloplast4.35E-03
30GO:0005759: mitochondrial matrix4.54E-03
31GO:0009707: chloroplast outer membrane4.90E-03
32GO:0009508: plastid chromosome9.38E-03
33GO:0019013: viral nucleocapsid9.38E-03
34GO:0030095: chloroplast photosystem II1.02E-02
35GO:0005875: microtubule associated complex1.20E-02
36GO:0005777: peroxisome1.34E-02
37GO:0009654: photosystem II oxygen evolving complex1.38E-02
38GO:0042651: thylakoid membrane1.38E-02
39GO:0005871: kinesin complex1.88E-02
40GO:0005623: cell1.99E-02
41GO:0009522: photosystem I2.21E-02
42GO:0019898: extrinsic component of membrane2.32E-02
43GO:0009504: cell plate2.32E-02
44GO:0005694: chromosome2.55E-02
45GO:0009295: nucleoid2.91E-02
46GO:0016021: integral component of membrane2.91E-02
47GO:0030529: intracellular ribonucleoprotein complex3.16E-02
48GO:0005829: cytosol3.34E-02
49GO:0009536: plastid4.20E-02
50GO:0005819: spindle4.81E-02
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Gene type



Gene DE type