co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71695

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030155: regulation of cell adhesion	0.00E+00
2	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
3	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0045176: apical protein localization	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
10	GO:0009773: photosynthetic electron transport in photosystem I	1.01E-08
11	GO:0015979: photosynthesis	3.02E-08
12	GO:0010027: thylakoid membrane organization	3.13E-06
13	GO:0010025: wax biosynthetic process	3.35E-06
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.28E-06
15	GO:0015995: chlorophyll biosynthetic process	4.81E-06
16	GO:0010196: nonphotochemical quenching	5.51E-06
17	GO:0009735: response to cytokinin	8.37E-06
18	GO:0032544: plastid translation	1.20E-05
19	GO:0090391: granum assembly	1.52E-05
20	GO:0042335: cuticle development	1.64E-05
21	GO:0018298: protein-chromophore linkage	1.01E-04
22	GO:0080051: cutin transport	3.07E-04
23	GO:0033481: galacturonate biosynthetic process	3.07E-04
24	GO:0065002: intracellular protein transmembrane transport	3.07E-04
25	GO:0043953: protein transport by the Tat complex	3.07E-04
26	GO:0071588: hydrogen peroxide mediated signaling pathway	3.07E-04
27	GO:0070509: calcium ion import	3.07E-04
28	GO:0007263: nitric oxide mediated signal transduction	3.07E-04
29	GO:0043489: RNA stabilization	3.07E-04
30	GO:0048564: photosystem I assembly	3.13E-04
31	GO:0008610: lipid biosynthetic process	3.13E-04
32	GO:0006869: lipid transport	3.42E-04
33	GO:0009657: plastid organization	3.84E-04
34	GO:0006810: transport	4.16E-04
35	GO:0000373: Group II intron splicing	4.63E-04
36	GO:0042761: very long-chain fatty acid biosynthetic process	5.47E-04
37	GO:0015908: fatty acid transport	6.71E-04
38	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.71E-04
39	GO:0043255: regulation of carbohydrate biosynthetic process	6.71E-04
40	GO:0010289: homogalacturonan biosynthetic process	6.71E-04
41	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.71E-04
42	GO:0000038: very long-chain fatty acid metabolic process	7.36E-04
43	GO:0009409: response to cold	1.08E-03
44	GO:0048281: inflorescence morphogenesis	1.09E-03
45	GO:1902448: positive regulation of shade avoidance	1.09E-03
46	GO:0051604: protein maturation	1.09E-03
47	GO:0006000: fructose metabolic process	1.09E-03
48	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.09E-03
49	GO:0009416: response to light stimulus	1.37E-03
50	GO:1901332: negative regulation of lateral root development	1.56E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.56E-03
52	GO:0010148: transpiration	1.56E-03
53	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.56E-03
54	GO:0016556: mRNA modification	1.56E-03
55	GO:0009768: photosynthesis, light harvesting in photosystem I	1.62E-03
56	GO:0071555: cell wall organization	1.72E-03
57	GO:0016998: cell wall macromolecule catabolic process	1.78E-03
58	GO:0009765: photosynthesis, light harvesting	2.09E-03
59	GO:0045727: positive regulation of translation	2.09E-03
60	GO:0015994: chlorophyll metabolic process	2.09E-03
61	GO:0010021: amylopectin biosynthetic process	2.09E-03
62	GO:0010222: stem vascular tissue pattern formation	2.09E-03
63	GO:0009809: lignin biosynthetic process	2.46E-03
64	GO:0032957: inositol trisphosphate metabolic process	2.67E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	2.67E-03
66	GO:0006461: protein complex assembly	2.67E-03
67	GO:0009741: response to brassinosteroid	2.91E-03
68	GO:0009658: chloroplast organization	2.98E-03
69	GO:0010337: regulation of salicylic acid metabolic process	3.30E-03
70	GO:0010358: leaf shaping	3.30E-03
71	GO:0016554: cytidine to uridine editing	3.30E-03
72	GO:0009913: epidermal cell differentiation	3.30E-03
73	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.30E-03
74	GO:0048827: phyllome development	3.30E-03
75	GO:0010190: cytochrome b6f complex assembly	3.30E-03
76	GO:0042549: photosystem II stabilization	3.30E-03
77	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.30E-03
78	GO:0010019: chloroplast-nucleus signaling pathway	3.97E-03
79	GO:0080167: response to karrikin	4.14E-03
80	GO:0005975: carbohydrate metabolic process	4.28E-03
81	GO:0009645: response to low light intensity stimulus	4.68E-03
82	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.68E-03
83	GO:0010103: stomatal complex morphogenesis	4.68E-03
84	GO:0070370: cellular heat acclimation	4.68E-03
85	GO:0050829: defense response to Gram-negative bacterium	4.68E-03
86	GO:0045292: mRNA cis splicing, via spliceosome	5.44E-03
87	GO:0010492: maintenance of shoot apical meristem identity	5.44E-03
88	GO:0071482: cellular response to light stimulus	6.23E-03
89	GO:0001558: regulation of cell growth	6.23E-03
90	GO:0006002: fructose 6-phosphate metabolic process	6.23E-03
91	GO:0048507: meristem development	7.07E-03
92	GO:0010206: photosystem II repair	7.07E-03
93	GO:0009631: cold acclimation	7.83E-03
94	GO:0010205: photoinhibition	7.94E-03
95	GO:1900865: chloroplast RNA modification	7.94E-03
96	GO:0009637: response to blue light	8.59E-03
97	GO:0006032: chitin catabolic process	8.84E-03
98	GO:0006352: DNA-templated transcription, initiation	9.79E-03
99	GO:0006415: translational termination	9.79E-03
100	GO:0009073: aromatic amino acid family biosynthetic process	9.79E-03
101	GO:0005983: starch catabolic process	1.08E-02
102	GO:0010114: response to red light	1.11E-02
103	GO:0010588: cotyledon vascular tissue pattern formation	1.18E-02
104	GO:0010229: inflorescence development	1.18E-02
105	GO:0006094: gluconeogenesis	1.18E-02
106	GO:0009767: photosynthetic electron transport chain	1.18E-02
107	GO:0009718: anthocyanin-containing compound biosynthetic process	1.18E-02
108	GO:0005986: sucrose biosynthetic process	1.18E-02
109	GO:0010143: cutin biosynthetic process	1.28E-02
110	GO:0009826: unidimensional cell growth	1.28E-02
111	GO:0010207: photosystem II assembly	1.28E-02
112	GO:0010540: basipetal auxin transport	1.28E-02
113	GO:0019253: reductive pentose-phosphate cycle	1.28E-02
114	GO:0006855: drug transmembrane transport	1.30E-02
115	GO:0071732: cellular response to nitric oxide	1.39E-02
116	GO:0009825: multidimensional cell growth	1.39E-02
117	GO:0010167: response to nitrate	1.39E-02
118	GO:0005985: sucrose metabolic process	1.39E-02
119	GO:0010053: root epidermal cell differentiation	1.39E-02
120	GO:0009225: nucleotide-sugar metabolic process	1.39E-02
121	GO:0009664: plant-type cell wall organization	1.40E-02
122	GO:0019762: glucosinolate catabolic process	1.50E-02
123	GO:0006833: water transport	1.50E-02
124	GO:0009944: polarity specification of adaxial/abaxial axis	1.62E-02
125	GO:0009695: jasmonic acid biosynthetic process	1.74E-02
126	GO:0019953: sexual reproduction	1.74E-02
127	GO:0007017: microtubule-based process	1.74E-02
128	GO:0051302: regulation of cell division	1.74E-02
129	GO:0009269: response to desiccation	1.86E-02
130	GO:0031408: oxylipin biosynthetic process	1.86E-02
131	GO:0009626: plant-type hypersensitive response	1.89E-02
132	GO:0035428: hexose transmembrane transport	1.98E-02
133	GO:0016226: iron-sulfur cluster assembly	1.98E-02
134	GO:0030245: cellulose catabolic process	1.98E-02
135	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.11E-02
136	GO:0071369: cellular response to ethylene stimulus	2.11E-02
137	GO:0001944: vasculature development	2.11E-02
138	GO:0006012: galactose metabolic process	2.11E-02
139	GO:0009742: brassinosteroid mediated signaling pathway	2.27E-02
140	GO:0080022: primary root development	2.50E-02
141	GO:0034220: ion transmembrane transport	2.50E-02
142	GO:0000413: protein peptidyl-prolyl isomerization	2.50E-02
143	GO:0042391: regulation of membrane potential	2.50E-02
144	GO:0055085: transmembrane transport	2.54E-02
145	GO:0046323: glucose import	2.64E-02
146	GO:0010268: brassinosteroid homeostasis	2.64E-02
147	GO:0006814: sodium ion transport	2.78E-02
148	GO:0016042: lipid catabolic process	2.79E-02
149	GO:0006629: lipid metabolic process	2.89E-02
150	GO:0019252: starch biosynthetic process	2.92E-02
151	GO:0008654: phospholipid biosynthetic process	2.92E-02
152	GO:0048825: cotyledon development	2.92E-02
153	GO:0000302: response to reactive oxygen species	3.07E-02
154	GO:0071554: cell wall organization or biogenesis	3.07E-02
155	GO:0016132: brassinosteroid biosynthetic process	3.07E-02
156	GO:0019761: glucosinolate biosynthetic process	3.21E-02
157	GO:0008152: metabolic process	3.26E-02
158	GO:0006633: fatty acid biosynthetic process	3.36E-02
159	GO:0030163: protein catabolic process	3.36E-02
160	GO:0071281: cellular response to iron ion	3.36E-02
161	GO:0016125: sterol metabolic process	3.52E-02
162	GO:0009828: plant-type cell wall loosening	3.52E-02
163	GO:0009567: double fertilization forming a zygote and endosperm	3.52E-02
164	GO:0071805: potassium ion transmembrane transport	3.67E-02
165	GO:0009451: RNA modification	3.78E-02
166	GO:0009911: positive regulation of flower development	3.98E-02
167	GO:0010411: xyloglucan metabolic process	4.48E-02
168	GO:0030244: cellulose biosynthetic process	4.81E-02
169	GO:0042742: defense response to bacterium	4.98E-02
170	GO:0010311: lateral root formation	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0005048: signal sequence binding	0.00E+00
6	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
7	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
8	GO:0016851: magnesium chelatase activity	3.40E-05
9	GO:0043495: protein anchor	6.10E-05
10	GO:0016168: chlorophyll binding	6.81E-05
11	GO:0019899: enzyme binding	2.48E-04
12	GO:0004321: fatty-acyl-CoA synthase activity	3.07E-04
13	GO:0019203: carbohydrate phosphatase activity	3.07E-04
14	GO:0019210: kinase inhibitor activity	3.07E-04
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.07E-04
16	GO:0015245: fatty acid transporter activity	3.07E-04
17	GO:0050308: sugar-phosphatase activity	3.07E-04
18	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	3.07E-04
19	GO:0009496: plastoquinol--plastocyanin reductase activity	3.07E-04
20	GO:0050139: nicotinate-N-glucosyltransferase activity	3.07E-04
21	GO:0010012: steroid 22-alpha hydroxylase activity	3.07E-04
22	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.07E-04
23	GO:0052747: sinapyl alcohol dehydrogenase activity	3.13E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.71E-04
25	GO:0008805: carbon-monoxide oxygenase activity	6.71E-04
26	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.71E-04
27	GO:0047746: chlorophyllase activity	6.71E-04
28	GO:0016630: protochlorophyllide reductase activity	6.71E-04
29	GO:0008967: phosphoglycolate phosphatase activity	6.71E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	6.71E-04
31	GO:0045551: cinnamyl-alcohol dehydrogenase activity	8.40E-04
32	GO:0008289: lipid binding	8.52E-04
33	GO:0004565: beta-galactosidase activity	9.50E-04
34	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.07E-03
35	GO:0008266: poly(U) RNA binding	1.07E-03
36	GO:0070330: aromatase activity	1.09E-03
37	GO:0004373: glycogen (starch) synthase activity	1.09E-03
38	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.09E-03
39	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.09E-03
40	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.09E-03
41	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.33E-03
42	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.33E-03
43	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.33E-03
44	GO:0031409: pigment binding	1.33E-03
45	GO:0005528: FK506 binding	1.47E-03
46	GO:0016149: translation release factor activity, codon specific	1.56E-03
47	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.56E-03
48	GO:0008508: bile acid:sodium symporter activity	1.56E-03
49	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.56E-03
50	GO:0004176: ATP-dependent peptidase activity	1.78E-03
51	GO:0050378: UDP-glucuronate 4-epimerase activity	2.09E-03
52	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.09E-03
53	GO:0004045: aminoacyl-tRNA hydrolase activity	2.09E-03
54	GO:0016987: sigma factor activity	2.09E-03
55	GO:0042277: peptide binding	2.09E-03
56	GO:0019199: transmembrane receptor protein kinase activity	2.09E-03
57	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.09E-03
58	GO:0009011: starch synthase activity	2.09E-03
59	GO:0001053: plastid sigma factor activity	2.09E-03
60	GO:0022891: substrate-specific transmembrane transporter activity	2.12E-03
61	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.20E-03
62	GO:0018685: alkane 1-monooxygenase activity	2.67E-03
63	GO:0003959: NADPH dehydrogenase activity	2.67E-03
64	GO:0016688: L-ascorbate peroxidase activity	3.30E-03
65	GO:0004130: cytochrome-c peroxidase activity	3.30E-03
66	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.30E-03
67	GO:2001070: starch binding	3.30E-03
68	GO:0005242: inward rectifier potassium channel activity	3.97E-03
69	GO:0051920: peroxiredoxin activity	3.97E-03
70	GO:0005261: cation channel activity	3.97E-03
71	GO:0016746: transferase activity, transferring acyl groups	4.00E-03
72	GO:0008237: metallopeptidase activity	4.62E-03
73	GO:0004620: phospholipase activity	4.68E-03
74	GO:0008312: 7S RNA binding	5.44E-03
75	GO:0004034: aldose 1-epimerase activity	5.44E-03
76	GO:0016209: antioxidant activity	5.44E-03
77	GO:0004033: aldo-keto reductase (NADP) activity	5.44E-03
78	GO:0016207: 4-coumarate-CoA ligase activity	7.07E-03
79	GO:0003747: translation release factor activity	7.07E-03
80	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	7.07E-03
81	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.07E-03
82	GO:0004222: metalloendopeptidase activity	7.47E-03
83	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.19E-03
84	GO:0030234: enzyme regulator activity	8.84E-03
85	GO:0004568: chitinase activity	8.84E-03
86	GO:0047372: acylglycerol lipase activity	9.79E-03
87	GO:0005262: calcium channel activity	1.18E-02
88	GO:0003729: mRNA binding	1.20E-02
89	GO:0008083: growth factor activity	1.28E-02
90	GO:0030552: cAMP binding	1.39E-02
91	GO:0030553: cGMP binding	1.39E-02
92	GO:0051536: iron-sulfur cluster binding	1.62E-02
93	GO:0043424: protein histidine kinase binding	1.74E-02
94	GO:0005216: ion channel activity	1.74E-02
95	GO:0015079: potassium ion transmembrane transporter activity	1.74E-02
96	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.83E-02
97	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.98E-02
98	GO:0003824: catalytic activity	2.01E-02
99	GO:0052689: carboxylic ester hydrolase activity	2.01E-02
100	GO:0016874: ligase activity	2.01E-02
101	GO:0008810: cellulase activity	2.11E-02
102	GO:0004871: signal transducer activity	2.36E-02
103	GO:0030551: cyclic nucleotide binding	2.50E-02
104	GO:0019843: rRNA binding	2.68E-02
105	GO:0005355: glucose transmembrane transporter activity	2.78E-02
106	GO:0016853: isomerase activity	2.78E-02
107	GO:0050662: coenzyme binding	2.78E-02
108	GO:0048038: quinone binding	3.07E-02
109	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.07E-02
110	GO:0004519: endonuclease activity	3.21E-02
111	GO:0004518: nuclease activity	3.21E-02
112	GO:0016759: cellulose synthase activity	3.52E-02
113	GO:0016791: phosphatase activity	3.52E-02
114	GO:0005200: structural constituent of cytoskeleton	3.67E-02
115	GO:0016413: O-acetyltransferase activity	3.83E-02
116	GO:0051213: dioxygenase activity	3.98E-02
117	GO:0015250: water channel activity	3.98E-02
118	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.48E-02
119	GO:0030247: polysaccharide binding	4.48E-02
120	GO:0008236: serine-type peptidase activity	4.64E-02
121	GO:0042802: identical protein binding	4.68E-02
122	GO:0015238: drug transmembrane transporter activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	1.06E-30
5	GO:0009535: chloroplast thylakoid membrane	2.17E-25
6	GO:0009534: chloroplast thylakoid	2.87E-21
7	GO:0009941: chloroplast envelope	1.01E-13
8	GO:0009570: chloroplast stroma	4.61E-13
9	GO:0009579: thylakoid	1.57E-12
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.44E-07
11	GO:0016021: integral component of membrane	3.82E-07
12	GO:0009543: chloroplast thylakoid lumen	1.13E-06
13	GO:0048046: apoplast	3.13E-06
14	GO:0009533: chloroplast stromal thylakoid	5.51E-06
15	GO:0010287: plastoglobule	1.37E-05
16	GO:0031977: thylakoid lumen	1.76E-05
17	GO:0042651: thylakoid membrane	1.33E-04
18	GO:0009782: photosystem I antenna complex	3.07E-04
19	GO:0031361: integral component of thylakoid membrane	3.07E-04
20	GO:0009523: photosystem II	3.71E-04
21	GO:0046658: anchored component of plasma membrane	4.82E-04
22	GO:0080085: signal recognition particle, chloroplast targeting	6.71E-04
23	GO:0010007: magnesium chelatase complex	1.09E-03
24	GO:0009897: external side of plasma membrane	1.09E-03
25	GO:0033281: TAT protein transport complex	1.09E-03
26	GO:0030076: light-harvesting complex	1.19E-03
27	GO:0015630: microtubule cytoskeleton	1.56E-03
28	GO:0009526: plastid envelope	2.09E-03
29	GO:0009512: cytochrome b6f complex	2.67E-03
30	GO:0055035: plastid thylakoid membrane	2.67E-03
31	GO:0005886: plasma membrane	3.82E-03
32	GO:0031969: chloroplast membrane	4.14E-03
33	GO:0030529: intracellular ribonucleoprotein complex	5.19E-03
34	GO:0009501: amyloplast	5.44E-03
35	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.23E-03
36	GO:0005802: trans-Golgi network	1.15E-02
37	GO:0005578: proteinaceous extracellular matrix	1.18E-02
38	GO:0030095: chloroplast photosystem II	1.28E-02
39	GO:0005768: endosome	1.43E-02
40	GO:0009654: photosystem II oxygen evolving complex	1.74E-02
41	GO:0016020: membrane	2.46E-02
42	GO:0009505: plant-type cell wall	2.51E-02
43	GO:0005770: late endosome	2.64E-02
44	GO:0009522: photosystem I	2.78E-02
45	GO:0019898: extrinsic component of membrane	2.92E-02
46	GO:0005618: cell wall	3.23E-02
47	GO:0043231: intracellular membrane-bounded organelle	3.26E-02
48	GO:0031225: anchored component of membrane	3.43E-02
49	GO:0032580: Golgi cisterna membrane	3.52E-02
50	GO:0010319: stromule	3.67E-02