Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G70670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0015979: photosynthesis5.17E-10
8GO:0009773: photosynthetic electron transport in photosystem I5.01E-09
9GO:0030388: fructose 1,6-bisphosphate metabolic process3.07E-06
10GO:0006000: fructose metabolic process1.11E-05
11GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.51E-05
12GO:0015995: chlorophyll biosynthetic process5.20E-05
13GO:0042254: ribosome biogenesis6.41E-05
14GO:0016117: carotenoid biosynthetic process1.76E-04
15GO:1904964: positive regulation of phytol biosynthetic process2.57E-04
16GO:1902458: positive regulation of stomatal opening2.57E-04
17GO:0071588: hydrogen peroxide mediated signaling pathway2.57E-04
18GO:0060627: regulation of vesicle-mediated transport2.57E-04
19GO:1904966: positive regulation of vitamin E biosynthetic process2.57E-04
20GO:0006002: fructose 6-phosphate metabolic process2.98E-04
21GO:0032544: plastid translation2.98E-04
22GO:0006412: translation3.02E-04
23GO:0009658: chloroplast organization4.03E-04
24GO:0097054: L-glutamate biosynthetic process5.68E-04
25GO:1903426: regulation of reactive oxygen species biosynthetic process5.68E-04
26GO:0010270: photosystem II oxygen evolving complex assembly5.68E-04
27GO:0006695: cholesterol biosynthetic process5.68E-04
28GO:1902326: positive regulation of chlorophyll biosynthetic process5.68E-04
29GO:0018119: peptidyl-cysteine S-nitrosylation5.76E-04
30GO:0006816: calcium ion transport5.76E-04
31GO:0018298: protein-chromophore linkage6.64E-04
32GO:0006094: gluconeogenesis7.47E-04
33GO:0005986: sucrose biosynthetic process7.47E-04
34GO:0010207: photosystem II assembly8.40E-04
35GO:0010020: chloroplast fission8.40E-04
36GO:0019253: reductive pentose-phosphate cycle8.40E-04
37GO:0006696: ergosterol biosynthetic process9.22E-04
38GO:0090506: axillary shoot meristem initiation9.22E-04
39GO:0006518: peptide metabolic process9.22E-04
40GO:0009768: photosynthesis, light harvesting in photosystem I1.27E-03
41GO:0043572: plastid fission1.32E-03
42GO:0007231: osmosensory signaling pathway1.32E-03
43GO:0051085: chaperone mediated protein folding requiring cofactor1.32E-03
44GO:0019048: modulation by virus of host morphology or physiology1.32E-03
45GO:0006537: glutamate biosynthetic process1.32E-03
46GO:0051016: barbed-end actin filament capping1.32E-03
47GO:0010731: protein glutathionylation1.32E-03
48GO:1901332: negative regulation of lateral root development1.32E-03
49GO:0031048: chromatin silencing by small RNA1.32E-03
50GO:0010088: phloem development1.32E-03
51GO:0016556: mRNA modification1.32E-03
52GO:0061077: chaperone-mediated protein folding1.39E-03
53GO:0009956: radial pattern formation1.76E-03
54GO:0006808: regulation of nitrogen utilization1.76E-03
55GO:0019676: ammonia assimilation cycle1.76E-03
56GO:0009765: photosynthesis, light harvesting1.76E-03
57GO:0045727: positive regulation of translation1.76E-03
58GO:0033500: carbohydrate homeostasis1.76E-03
59GO:0006546: glycine catabolic process1.76E-03
60GO:0051567: histone H3-K9 methylation1.76E-03
61GO:0016123: xanthophyll biosynthetic process2.25E-03
62GO:0046785: microtubule polymerization2.25E-03
63GO:0016120: carotene biosynthetic process2.25E-03
64GO:0006656: phosphatidylcholine biosynthetic process2.25E-03
65GO:0010236: plastoquinone biosynthetic process2.25E-03
66GO:0045038: protein import into chloroplast thylakoid membrane2.25E-03
67GO:0010305: leaf vascular tissue pattern formation2.26E-03
68GO:0006810: transport2.27E-03
69GO:0019252: starch biosynthetic process2.61E-03
70GO:0042549: photosystem II stabilization2.77E-03
71GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.77E-03
72GO:0010358: leaf shaping2.77E-03
73GO:0006828: manganese ion transport2.77E-03
74GO:0032973: amino acid export2.77E-03
75GO:0016458: gene silencing2.77E-03
76GO:0006014: D-ribose metabolic process2.77E-03
77GO:0010090: trichome morphogenesis3.18E-03
78GO:0010189: vitamin E biosynthetic process3.33E-03
79GO:0010019: chloroplast-nucleus signaling pathway3.33E-03
80GO:0009955: adaxial/abaxial pattern specification3.33E-03
81GO:0010067: procambium histogenesis3.33E-03
82GO:0042026: protein refolding3.33E-03
83GO:0009942: longitudinal axis specification3.33E-03
84GO:1901259: chloroplast rRNA processing3.33E-03
85GO:0043090: amino acid import3.93E-03
86GO:0051693: actin filament capping3.93E-03
87GO:0010196: nonphotochemical quenching3.93E-03
88GO:0009645: response to low light intensity stimulus3.93E-03
89GO:0010027: thylakoid membrane organization4.03E-03
90GO:0055114: oxidation-reduction process4.49E-03
91GO:2000070: regulation of response to water deprivation4.56E-03
92GO:0008610: lipid biosynthetic process4.56E-03
93GO:0032259: methylation4.75E-03
94GO:0017004: cytochrome complex assembly5.22E-03
95GO:0015996: chlorophyll catabolic process5.22E-03
96GO:0007186: G-protein coupled receptor signaling pathway5.22E-03
97GO:0000902: cell morphogenesis5.92E-03
98GO:0045337: farnesyl diphosphate biosynthetic process5.92E-03
99GO:0080144: amino acid homeostasis5.92E-03
100GO:0033384: geranyl diphosphate biosynthetic process5.92E-03
101GO:0048507: meristem development5.92E-03
102GO:0009409: response to cold6.06E-03
103GO:0006779: porphyrin-containing compound biosynthetic process6.64E-03
104GO:0016051: carbohydrate biosynthetic process6.65E-03
105GO:0034599: cellular response to oxidative stress6.96E-03
106GO:0030422: production of siRNA involved in RNA interference7.40E-03
107GO:0006782: protoporphyrinogen IX biosynthetic process7.40E-03
108GO:0010015: root morphogenesis8.19E-03
109GO:0019684: photosynthesis, light reaction8.19E-03
110GO:0009089: lysine biosynthetic process via diaminopimelate8.19E-03
111GO:0043085: positive regulation of catalytic activity8.19E-03
112GO:0000272: polysaccharide catabolic process8.19E-03
113GO:0009744: response to sucrose8.59E-03
114GO:0045037: protein import into chloroplast stroma9.00E-03
115GO:0030036: actin cytoskeleton organization9.85E-03
116GO:0009725: response to hormone9.85E-03
117GO:0010102: lateral root morphogenesis9.85E-03
118GO:0009735: response to cytokinin1.06E-02
119GO:0010223: secondary shoot formation1.07E-02
120GO:0009933: meristem structural organization1.07E-02
121GO:0007015: actin filament organization1.07E-02
122GO:0042742: defense response to bacterium1.10E-02
123GO:0070588: calcium ion transmembrane transport1.16E-02
124GO:0005985: sucrose metabolic process1.16E-02
125GO:0019762: glucosinolate catabolic process1.25E-02
126GO:0008299: isoprenoid biosynthetic process1.45E-02
127GO:0016575: histone deacetylation1.45E-02
128GO:0006306: DNA methylation1.55E-02
129GO:0045454: cell redox homeostasis1.61E-02
130GO:0007005: mitochondrion organization1.65E-02
131GO:0030245: cellulose catabolic process1.65E-02
132GO:0016226: iron-sulfur cluster assembly1.65E-02
133GO:0001944: vasculature development1.76E-02
134GO:0009294: DNA mediated transformation1.76E-02
135GO:0006457: protein folding1.79E-02
136GO:0010089: xylem development1.86E-02
137GO:0019722: calcium-mediated signaling1.86E-02
138GO:0000413: protein peptidyl-prolyl isomerization2.09E-02
139GO:0010051: xylem and phloem pattern formation2.09E-02
140GO:0010087: phloem or xylem histogenesis2.09E-02
141GO:0042631: cellular response to water deprivation2.09E-02
142GO:0042335: cuticle development2.09E-02
143GO:0010182: sugar mediated signaling pathway2.20E-02
144GO:0006342: chromatin silencing2.20E-02
145GO:0009741: response to brassinosteroid2.20E-02
146GO:0010268: brassinosteroid homeostasis2.20E-02
147GO:0006662: glycerol ether metabolic process2.20E-02
148GO:0007018: microtubule-based movement2.32E-02
149GO:0016132: brassinosteroid biosynthetic process2.56E-02
150GO:0071554: cell wall organization or biogenesis2.56E-02
151GO:0000302: response to reactive oxygen species2.56E-02
152GO:0006633: fatty acid biosynthetic process2.61E-02
153GO:0007264: small GTPase mediated signal transduction2.68E-02
154GO:0007623: circadian rhythm2.87E-02
155GO:0006508: proteolysis2.91E-02
156GO:0016125: sterol metabolic process2.93E-02
157GO:0007267: cell-cell signaling3.06E-02
158GO:0051607: defense response to virus3.19E-02
159GO:0071555: cell wall organization3.45E-02
160GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.46E-02
161GO:0009816: defense response to bacterium, incompatible interaction3.46E-02
162GO:0009627: systemic acquired resistance3.59E-02
163GO:0042128: nitrate assimilation3.59E-02
164GO:0008219: cell death4.01E-02
165GO:0009817: defense response to fungus, incompatible interaction4.01E-02
166GO:0010311: lateral root formation4.16E-02
167GO:0010218: response to far red light4.30E-02
168GO:0009407: toxin catabolic process4.30E-02
169GO:0007568: aging4.45E-02
170GO:0009631: cold acclimation4.45E-02
171GO:0009637: response to blue light4.75E-02
172GO:0009853: photorespiration4.75E-02
173GO:0009867: jasmonic acid mediated signaling pathway4.75E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0051738: xanthophyll binding0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
7GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
8GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
9GO:0051721: protein phosphatase 2A binding0.00E+00
10GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
13GO:0042903: tubulin deacetylase activity0.00E+00
14GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
15GO:0045435: lycopene epsilon cyclase activity0.00E+00
16GO:0043014: alpha-tubulin binding0.00E+00
17GO:0046905: phytoene synthase activity0.00E+00
18GO:0019843: rRNA binding9.49E-10
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.07E-06
20GO:0016168: chlorophyll binding4.22E-05
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.54E-05
22GO:0004222: metalloendopeptidase activity7.61E-05
23GO:0003735: structural constituent of ribosome1.32E-04
24GO:0051920: peroxiredoxin activity1.45E-04
25GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.02E-04
26GO:0016209: antioxidant activity2.41E-04
27GO:0016041: glutamate synthase (ferredoxin) activity2.57E-04
28GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.57E-04
29GO:0010012: steroid 22-alpha hydroxylase activity2.57E-04
30GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.57E-04
31GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.57E-04
32GO:0051996: squalene synthase activity2.57E-04
33GO:0008237: metallopeptidase activity4.07E-04
34GO:0008967: phosphoglycolate phosphatase activity5.68E-04
35GO:0010297: heteropolysaccharide binding5.68E-04
36GO:0004047: aminomethyltransferase activity5.68E-04
37GO:0008805: carbon-monoxide oxygenase activity5.68E-04
38GO:0016630: protochlorophyllide reductase activity5.68E-04
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.68E-04
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.68E-04
41GO:0000234: phosphoethanolamine N-methyltransferase activity5.68E-04
42GO:0031072: heat shock protein binding7.47E-04
43GO:0004565: beta-galactosidase activity7.47E-04
44GO:0030267: glyoxylate reductase (NADP) activity9.22E-04
45GO:0017150: tRNA dihydrouridine synthase activity9.22E-04
46GO:0004148: dihydrolipoyl dehydrogenase activity9.22E-04
47GO:0045174: glutathione dehydrogenase (ascorbate) activity9.22E-04
48GO:0031409: pigment binding1.04E-03
49GO:0005528: FK506 binding1.15E-03
50GO:0008097: 5S rRNA binding1.32E-03
51GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.32E-03
52GO:0048487: beta-tubulin binding1.32E-03
53GO:0035197: siRNA binding1.32E-03
54GO:0043621: protein self-association1.35E-03
55GO:0004176: ATP-dependent peptidase activity1.39E-03
56GO:0022891: substrate-specific transmembrane transporter activity1.65E-03
57GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.76E-03
58GO:0043495: protein anchor1.76E-03
59GO:0051538: 3 iron, 4 sulfur cluster binding2.25E-03
60GO:0003959: NADPH dehydrogenase activity2.25E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor2.25E-03
62GO:0004040: amidase activity2.25E-03
63GO:0008200: ion channel inhibitor activity2.77E-03
64GO:0004130: cytochrome-c peroxidase activity2.77E-03
65GO:0016688: L-ascorbate peroxidase activity2.77E-03
66GO:0042578: phosphoric ester hydrolase activity2.77E-03
67GO:0051082: unfolded protein binding2.79E-03
68GO:0048038: quinone binding2.79E-03
69GO:0051753: mannan synthase activity3.33E-03
70GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.33E-03
71GO:0004747: ribokinase activity3.33E-03
72GO:0004620: phospholipase activity3.93E-03
73GO:0019899: enzyme binding3.93E-03
74GO:0004033: aldo-keto reductase (NADP) activity4.56E-03
75GO:0008865: fructokinase activity4.56E-03
76GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.22E-03
77GO:0004337: geranyltranstransferase activity5.92E-03
78GO:0005384: manganese ion transmembrane transporter activity6.64E-03
79GO:0030234: enzyme regulator activity7.40E-03
80GO:0008047: enzyme activator activity7.40E-03
81GO:0042802: identical protein binding7.58E-03
82GO:0044183: protein binding involved in protein folding8.19E-03
83GO:0004161: dimethylallyltranstransferase activity8.19E-03
84GO:0047372: acylglycerol lipase activity8.19E-03
85GO:0004364: glutathione transferase activity8.25E-03
86GO:0004521: endoribonuclease activity9.00E-03
87GO:0008168: methyltransferase activity9.28E-03
88GO:0051537: 2 iron, 2 sulfur cluster binding9.29E-03
89GO:0015095: magnesium ion transmembrane transporter activity9.85E-03
90GO:0005262: calcium channel activity9.85E-03
91GO:0008083: growth factor activity1.07E-02
92GO:0051536: iron-sulfur cluster binding1.35E-02
93GO:0004407: histone deacetylase activity1.35E-02
94GO:0008324: cation transmembrane transporter activity1.45E-02
95GO:0033612: receptor serine/threonine kinase binding1.55E-02
96GO:0008810: cellulase activity1.76E-02
97GO:0016491: oxidoreductase activity1.77E-02
98GO:0047134: protein-disulfide reductase activity1.97E-02
99GO:0005102: receptor binding1.97E-02
100GO:0003924: GTPase activity2.10E-02
101GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.13E-02
102GO:0009055: electron carrier activity2.29E-02
103GO:0004791: thioredoxin-disulfide reductase activity2.32E-02
104GO:0050662: coenzyme binding2.32E-02
105GO:0004872: receptor activity2.43E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.80E-02
107GO:0051015: actin filament binding2.80E-02
108GO:0016759: cellulose synthase activity2.93E-02
109GO:0008017: microtubule binding3.00E-02
110GO:0008483: transaminase activity3.06E-02
111GO:0016722: oxidoreductase activity, oxidizing metal ions3.06E-02
112GO:0016413: O-acetyltransferase activity3.19E-02
113GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.87E-02
114GO:0004601: peroxidase activity4.42E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast6.66E-46
2GO:0009941: chloroplast envelope1.81E-29
3GO:0009535: chloroplast thylakoid membrane7.40E-26
4GO:0009570: chloroplast stroma7.76E-26
5GO:0009534: chloroplast thylakoid5.62E-11
6GO:0009579: thylakoid7.14E-10
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.11E-09
8GO:0009543: chloroplast thylakoid lumen2.27E-08
9GO:0031969: chloroplast membrane1.08E-06
10GO:0005840: ribosome1.70E-06
11GO:0009654: photosystem II oxygen evolving complex3.08E-06
12GO:0048046: apoplast3.75E-06
13GO:0031977: thylakoid lumen9.48E-06
14GO:0010319: stromule3.00E-05
15GO:0010287: plastoglobule7.92E-05
16GO:0042651: thylakoid membrane9.22E-05
17GO:0009782: photosystem I antenna complex2.57E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.57E-04
19GO:0009523: photosystem II2.66E-04
20GO:0019898: extrinsic component of membrane2.66E-04
21GO:0008290: F-actin capping protein complex5.68E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex5.68E-04
23GO:0000311: plastid large ribosomal subunit6.59E-04
24GO:0015934: large ribosomal subunit7.97E-04
25GO:0030095: chloroplast photosystem II8.40E-04
26GO:0009528: plastid inner membrane9.22E-04
27GO:0030076: light-harvesting complex9.38E-04
28GO:0005719: nuclear euchromatin1.32E-03
29GO:0009532: plastid stroma1.39E-03
30GO:0009527: plastid outer membrane1.76E-03
31GO:0009517: PSII associated light-harvesting complex II1.76E-03
32GO:0009706: chloroplast inner membrane2.79E-03
33GO:0009533: chloroplast stromal thylakoid3.93E-03
34GO:0009539: photosystem II reaction center5.22E-03
35GO:0005763: mitochondrial small ribosomal subunit5.92E-03
36GO:0015030: Cajal body6.64E-03
37GO:0055028: cortical microtubule7.40E-03
38GO:0005884: actin filament8.19E-03
39GO:0022626: cytosolic ribosome1.13E-02
40GO:0009536: plastid1.57E-02
41GO:0009505: plant-type cell wall1.63E-02
42GO:0005871: kinesin complex1.97E-02
43GO:0009522: photosystem I2.32E-02
44GO:0005778: peroxisomal membrane3.06E-02
45GO:0016020: membrane3.06E-02
46GO:0005615: extracellular space3.20E-02
47GO:0030529: intracellular ribonucleoprotein complex3.32E-02
48GO:0046658: anchored component of plasma membrane3.79E-02
49GO:0009707: chloroplast outer membrane4.01E-02
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Gene type



Gene DE type