Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G70610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018023: peptidyl-lysine trimethylation0.00E+00
2GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:0033231: carbohydrate export0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I9.20E-11
9GO:0010027: thylakoid membrane organization2.66E-09
10GO:0015979: photosynthesis3.83E-07
11GO:0010205: photoinhibition2.19E-05
12GO:0015994: chlorophyll metabolic process6.01E-05
13GO:0010207: photosystem II assembly6.83E-05
14GO:0016120: carotene biosynthetic process9.49E-05
15GO:0006636: unsaturated fatty acid biosynthetic process9.67E-05
16GO:0042549: photosystem II stabilization1.37E-04
17GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.37E-04
18GO:1901259: chloroplast rRNA processing1.88E-04
19GO:0071277: cellular response to calcium ion3.04E-04
20GO:1904966: positive regulation of vitamin E biosynthetic process3.04E-04
21GO:1904964: positive regulation of phytol biosynthetic process3.04E-04
22GO:0065002: intracellular protein transmembrane transport3.04E-04
23GO:0006106: fumarate metabolic process3.04E-04
24GO:0043686: co-translational protein modification3.04E-04
25GO:0034337: RNA folding3.04E-04
26GO:0000305: response to oxygen radical3.04E-04
27GO:1902334: fructose export from vacuole to cytoplasm3.04E-04
28GO:0015755: fructose transport3.04E-04
29GO:0043953: protein transport by the Tat complex3.04E-04
30GO:0009642: response to light intensity3.09E-04
31GO:0018026: peptidyl-lysine monomethylation6.66E-04
32GO:0016122: xanthophyll metabolic process6.66E-04
33GO:0030388: fructose 1,6-bisphosphate metabolic process6.66E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly6.66E-04
35GO:0009915: phloem sucrose loading6.66E-04
36GO:1902326: positive regulation of chlorophyll biosynthetic process6.66E-04
37GO:0035304: regulation of protein dephosphorylation6.66E-04
38GO:0080005: photosystem stoichiometry adjustment6.66E-04
39GO:0010115: regulation of abscisic acid biosynthetic process6.66E-04
40GO:0034755: iron ion transmembrane transport6.66E-04
41GO:1900871: chloroplast mRNA modification6.66E-04
42GO:0055114: oxidation-reduction process7.10E-04
43GO:0009750: response to fructose7.28E-04
44GO:0006094: gluconeogenesis9.40E-04
45GO:0051604: protein maturation1.08E-03
46GO:0016050: vesicle organization1.08E-03
47GO:1902448: positive regulation of shade avoidance1.08E-03
48GO:0006000: fructose metabolic process1.08E-03
49GO:0006954: inflammatory response1.08E-03
50GO:0090391: granum assembly1.08E-03
51GO:0006518: peptide metabolic process1.08E-03
52GO:0007623: circadian rhythm1.50E-03
53GO:0010371: regulation of gibberellin biosynthetic process1.55E-03
54GO:0071484: cellular response to light intensity1.55E-03
55GO:0009152: purine ribonucleotide biosynthetic process1.55E-03
56GO:0046653: tetrahydrofolate metabolic process1.55E-03
57GO:0010239: chloroplast mRNA processing1.55E-03
58GO:0080170: hydrogen peroxide transmembrane transport1.55E-03
59GO:0009052: pentose-phosphate shunt, non-oxidative branch1.55E-03
60GO:0009644: response to high light intensity1.83E-03
61GO:0010021: amylopectin biosynthetic process2.07E-03
62GO:0010109: regulation of photosynthesis2.07E-03
63GO:0009765: photosynthesis, light harvesting2.07E-03
64GO:0006109: regulation of carbohydrate metabolic process2.07E-03
65GO:0045727: positive regulation of translation2.07E-03
66GO:0006749: glutathione metabolic process2.07E-03
67GO:0009306: protein secretion2.28E-03
68GO:0006364: rRNA processing2.42E-03
69GO:0032543: mitochondrial translation2.65E-03
70GO:0010117: photoprotection2.65E-03
71GO:0006564: L-serine biosynthetic process2.65E-03
72GO:0031365: N-terminal protein amino acid modification2.65E-03
73GO:0006561: proline biosynthetic process3.27E-03
74GO:0016554: cytidine to uridine editing3.27E-03
75GO:0006655: phosphatidylglycerol biosynthetic process3.27E-03
76GO:0010189: vitamin E biosynthetic process3.93E-03
77GO:0009735: response to cytokinin4.22E-03
78GO:1900057: positive regulation of leaf senescence4.64E-03
79GO:0010444: guard mother cell differentiation4.64E-03
80GO:0006400: tRNA modification4.64E-03
81GO:0015693: magnesium ion transport4.64E-03
82GO:0009395: phospholipid catabolic process4.64E-03
83GO:0010196: nonphotochemical quenching4.64E-03
84GO:0016126: sterol biosynthetic process5.13E-03
85GO:0006605: protein targeting5.39E-03
86GO:0009704: de-etiolation5.39E-03
87GO:0016559: peroxisome fission5.39E-03
88GO:0008610: lipid biosynthetic process5.39E-03
89GO:0030091: protein repair5.39E-03
90GO:0006353: DNA-templated transcription, termination5.39E-03
91GO:0015995: chlorophyll biosynthetic process6.04E-03
92GO:0032544: plastid translation6.18E-03
93GO:0006002: fructose 6-phosphate metabolic process6.18E-03
94GO:0071482: cellular response to light stimulus6.18E-03
95GO:0018298: protein-chromophore linkage6.69E-03
96GO:0090333: regulation of stomatal closure7.01E-03
97GO:0009631: cold acclimation7.74E-03
98GO:1900865: chloroplast RNA modification7.87E-03
99GO:0008152: metabolic process8.51E-03
100GO:0009688: abscisic acid biosynthetic process8.77E-03
101GO:0006995: cellular response to nitrogen starvation8.77E-03
102GO:1903507: negative regulation of nucleic acid-templated transcription9.71E-03
103GO:0006879: cellular iron ion homeostasis9.71E-03
104GO:0019684: photosynthesis, light reaction9.71E-03
105GO:0008285: negative regulation of cell proliferation9.71E-03
106GO:0043085: positive regulation of catalytic activity9.71E-03
107GO:0016024: CDP-diacylglycerol biosynthetic process1.07E-02
108GO:0010628: positive regulation of gene expression1.17E-02
109GO:0006108: malate metabolic process1.17E-02
110GO:0009718: anthocyanin-containing compound biosynthetic process1.17E-02
111GO:0005986: sucrose biosynthetic process1.17E-02
112GO:0019253: reductive pentose-phosphate cycle1.27E-02
113GO:0009266: response to temperature stimulus1.27E-02
114GO:0010020: chloroplast fission1.27E-02
115GO:0031347: regulation of defense response1.33E-02
116GO:0071732: cellular response to nitric oxide1.38E-02
117GO:0005985: sucrose metabolic process1.38E-02
118GO:0009833: plant-type primary cell wall biogenesis1.49E-02
119GO:0006833: water transport1.49E-02
120GO:0010025: wax biosynthetic process1.49E-02
121GO:0010073: meristem maintenance1.72E-02
122GO:0008299: isoprenoid biosynthetic process1.72E-02
123GO:0006418: tRNA aminoacylation for protein translation1.72E-02
124GO:0016114: terpenoid biosynthetic process1.84E-02
125GO:0051260: protein homooligomerization1.84E-02
126GO:0031408: oxylipin biosynthetic process1.84E-02
127GO:0016226: iron-sulfur cluster assembly1.96E-02
128GO:0035428: hexose transmembrane transport1.96E-02
129GO:2000022: regulation of jasmonic acid mediated signaling pathway1.96E-02
130GO:0071369: cellular response to ethylene stimulus2.09E-02
131GO:0010227: floral organ abscission2.09E-02
132GO:0042127: regulation of cell proliferation2.22E-02
133GO:0009561: megagametogenesis2.22E-02
134GO:0016117: carotenoid biosynthetic process2.35E-02
135GO:0070417: cellular response to cold2.35E-02
136GO:0006869: lipid transport2.46E-02
137GO:0034220: ion transmembrane transport2.48E-02
138GO:0000413: protein peptidyl-prolyl isomerization2.48E-02
139GO:0055085: transmembrane transport2.49E-02
140GO:0006662: glycerol ether metabolic process2.62E-02
141GO:0010182: sugar mediated signaling pathway2.62E-02
142GO:0046323: glucose import2.62E-02
143GO:0009646: response to absence of light2.76E-02
144GO:0019252: starch biosynthetic process2.90E-02
145GO:0016032: viral process3.19E-02
146GO:0006810: transport3.21E-02
147GO:0006633: fatty acid biosynthetic process3.32E-02
148GO:0071281: cellular response to iron ion3.33E-02
149GO:0005975: carbohydrate metabolic process3.39E-02
150GO:0009567: double fertilization forming a zygote and endosperm3.49E-02
151GO:0071805: potassium ion transmembrane transport3.64E-02
152GO:0009451: RNA modification3.73E-02
153GO:0007166: cell surface receptor signaling pathway4.17E-02
154GO:0042128: nitrate assimilation4.27E-02
155GO:0030244: cellulose biosynthetic process4.77E-02
156GO:0000160: phosphorelay signal transduction system4.94E-02
157GO:0006979: response to oxidative stress4.95E-02
RankGO TermAdjusted P value
1GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
2GO:0004823: leucine-tRNA ligase activity0.00E+00
3GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
4GO:0015284: fructose uniporter activity0.00E+00
5GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
6GO:0045436: lycopene beta cyclase activity0.00E+00
7GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
8GO:0010301: xanthoxin dehydrogenase activity0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0009976: tocopherol cyclase activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
13GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
14GO:0004506: squalene monooxygenase activity6.01E-05
15GO:0005080: protein kinase C binding3.04E-04
16GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.04E-04
17GO:0004328: formamidase activity3.04E-04
18GO:0004333: fumarate hydratase activity3.04E-04
19GO:0035671: enone reductase activity3.04E-04
20GO:0050139: nicotinate-N-glucosyltransferase activity3.04E-04
21GO:0010242: oxygen evolving activity3.04E-04
22GO:0004856: xylulokinase activity3.04E-04
23GO:0042586: peptide deformylase activity3.04E-04
24GO:0045485: omega-6 fatty acid desaturase activity3.04E-04
25GO:0005353: fructose transmembrane transporter activity6.66E-04
26GO:0004362: glutathione-disulfide reductase activity6.66E-04
27GO:0047746: chlorophyllase activity6.66E-04
28GO:0009977: proton motive force dependent protein transmembrane transporter activity6.66E-04
29GO:0004617: phosphoglycerate dehydrogenase activity6.66E-04
30GO:0033201: alpha-1,4-glucan synthase activity6.66E-04
31GO:0004312: fatty acid synthase activity6.66E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.66E-04
33GO:0004022: alcohol dehydrogenase (NAD) activity9.40E-04
34GO:0004565: beta-galactosidase activity9.40E-04
35GO:0016491: oxidoreductase activity9.80E-04
36GO:0008266: poly(U) RNA binding1.06E-03
37GO:0004751: ribose-5-phosphate isomerase activity1.08E-03
38GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.08E-03
39GO:0070402: NADPH binding1.08E-03
40GO:0008864: formyltetrahydrofolate deformylase activity1.08E-03
41GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.08E-03
42GO:0004373: glycogen (starch) synthase activity1.08E-03
43GO:0002161: aminoacyl-tRNA editing activity1.08E-03
44GO:0016787: hydrolase activity1.09E-03
45GO:0005528: FK506 binding1.45E-03
46GO:0016851: magnesium chelatase activity1.55E-03
47GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.55E-03
48GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.55E-03
49GO:0001872: (1->3)-beta-D-glucan binding1.55E-03
50GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.02E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.07E-03
52GO:0016279: protein-lysine N-methyltransferase activity2.07E-03
53GO:0004045: aminoacyl-tRNA hydrolase activity2.07E-03
54GO:0009011: starch synthase activity2.07E-03
55GO:0043495: protein anchor2.07E-03
56GO:0022891: substrate-specific transmembrane transporter activity2.10E-03
57GO:0042802: identical protein binding2.17E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor2.65E-03
59GO:0016853: isomerase activity3.09E-03
60GO:0004332: fructose-bisphosphate aldolase activity3.27E-03
61GO:0035673: oligopeptide transmembrane transporter activity3.27E-03
62GO:0042578: phosphoric ester hydrolase activity3.27E-03
63GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.93E-03
64GO:0004620: phospholipase activity4.64E-03
65GO:0019899: enzyme binding4.64E-03
66GO:0019843: rRNA binding5.05E-03
67GO:0043022: ribosome binding5.39E-03
68GO:0016168: chlorophyll binding5.42E-03
69GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.18E-03
70GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.01E-03
71GO:0005381: iron ion transmembrane transporter activity7.87E-03
72GO:0008047: enzyme activator activity8.77E-03
73GO:0015198: oligopeptide transporter activity1.07E-02
74GO:0015095: magnesium ion transmembrane transporter activity1.17E-02
75GO:0031072: heat shock protein binding1.17E-02
76GO:0009982: pseudouridine synthase activity1.17E-02
77GO:0016788: hydrolase activity, acting on ester bonds1.36E-02
78GO:0051119: sugar transmembrane transporter activity1.38E-02
79GO:0051536: iron-sulfur cluster binding1.60E-02
80GO:0050660: flavin adenine dinucleotide binding1.60E-02
81GO:0004857: enzyme inhibitor activity1.60E-02
82GO:0003714: transcription corepressor activity1.60E-02
83GO:0043424: protein histidine kinase binding1.72E-02
84GO:0015079: potassium ion transmembrane transporter activity1.72E-02
85GO:0004176: ATP-dependent peptidase activity1.84E-02
86GO:0016760: cellulose synthase (UDP-forming) activity2.09E-02
87GO:0047134: protein-disulfide reductase activity2.35E-02
88GO:0004812: aminoacyl-tRNA ligase activity2.35E-02
89GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.72E-02
90GO:0004791: thioredoxin-disulfide reductase activity2.76E-02
91GO:0005355: glucose transmembrane transporter activity2.76E-02
92GO:0050662: coenzyme binding2.76E-02
93GO:0009055: electron carrier activity3.11E-02
94GO:0004518: nuclease activity3.19E-02
95GO:0000156: phosphorelay response regulator activity3.33E-02
96GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.33E-02
97GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.40E-02
98GO:0016759: cellulose synthase activity3.49E-02
99GO:0005525: GTP binding3.64E-02
100GO:0016597: amino acid binding3.79E-02
101GO:0015250: water channel activity3.95E-02
102GO:0030247: polysaccharide binding4.44E-02
103GO:0004721: phosphoprotein phosphatase activity4.44E-02
104GO:0008236: serine-type peptidase activity4.60E-02
105GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.62E-02
106GO:0005515: protein binding4.70E-02
107GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast6.34E-60
4GO:0009535: chloroplast thylakoid membrane1.80E-25
5GO:0009570: chloroplast stroma7.07E-23
6GO:0009534: chloroplast thylakoid2.51E-21
7GO:0009941: chloroplast envelope1.08E-15
8GO:0009579: thylakoid2.01E-11
9GO:0010287: plastoglobule8.99E-07
10GO:0009543: chloroplast thylakoid lumen1.09E-06
11GO:0033281: TAT protein transport complex1.50E-05
12GO:0031977: thylakoid lumen2.04E-04
13GO:0009515: granal stacked thylakoid3.04E-04
14GO:0045239: tricarboxylic acid cycle enzyme complex3.04E-04
15GO:0031361: integral component of thylakoid membrane3.04E-04
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.57E-04
17GO:0009706: chloroplast inner membrane6.58E-04
18GO:0031969: chloroplast membrane9.10E-04
19GO:0010007: magnesium chelatase complex1.08E-03
20GO:0009654: photosystem II oxygen evolving complex1.60E-03
21GO:0009526: plastid envelope2.07E-03
22GO:0055035: plastid thylakoid membrane2.65E-03
23GO:0009523: photosystem II3.31E-03
24GO:0019898: extrinsic component of membrane3.31E-03
25GO:0010319: stromule4.56E-03
26GO:0009533: chloroplast stromal thylakoid4.64E-03
27GO:0016021: integral component of membrane4.86E-03
28GO:0009501: amyloplast5.39E-03
29GO:0008180: COP9 signalosome7.01E-03
30GO:0032040: small-subunit processome1.07E-02
31GO:0009508: plastid chromosome1.17E-02
32GO:0030095: chloroplast photosystem II1.27E-02
33GO:0042651: thylakoid membrane1.72E-02
34GO:0005623: cell2.72E-02
35GO:0009522: photosystem I2.76E-02
36GO:0009295: nucleoid3.64E-02
37GO:0030529: intracellular ribonucleoprotein complex3.95E-02
38GO:0019005: SCF ubiquitin ligase complex4.77E-02
39GO:0009707: chloroplast outer membrane4.77E-02
40GO:0046658: anchored component of plasma membrane4.81E-02
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Gene type



Gene DE type