GO Enrichment Analysis of Co-expressed Genes with
AT1G68540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 3 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 4 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 3.01E-12 |
| 6 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.15E-06 |
| 7 | GO:0009657: plastid organization | 1.27E-04 |
| 8 | GO:0043971: histone H3-K18 acetylation | 1.46E-04 |
| 9 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.46E-04 |
| 10 | GO:0046900: tetrahydrofolylpolyglutamate metabolic process | 1.46E-04 |
| 11 | GO:0033481: galacturonate biosynthetic process | 1.46E-04 |
| 12 | GO:0015979: photosynthesis | 1.65E-04 |
| 13 | GO:0006415: translational termination | 2.59E-04 |
| 14 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.33E-04 |
| 15 | GO:0080005: photosystem stoichiometry adjustment | 3.33E-04 |
| 16 | GO:0009662: etioplast organization | 3.33E-04 |
| 17 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.33E-04 |
| 18 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.33E-04 |
| 19 | GO:0006094: gluconeogenesis | 3.41E-04 |
| 20 | GO:0010207: photosystem II assembly | 3.85E-04 |
| 21 | GO:0006518: peptide metabolic process | 5.47E-04 |
| 22 | GO:0051604: protein maturation | 5.47E-04 |
| 23 | GO:0006000: fructose metabolic process | 5.47E-04 |
| 24 | GO:0006508: proteolysis | 5.74E-04 |
| 25 | GO:0009658: chloroplast organization | 5.94E-04 |
| 26 | GO:0016556: mRNA modification | 7.83E-04 |
| 27 | GO:0043572: plastid fission | 7.83E-04 |
| 28 | GO:0009741: response to brassinosteroid | 1.03E-03 |
| 29 | GO:0031122: cytoplasmic microtubule organization | 1.04E-03 |
| 30 | GO:0071483: cellular response to blue light | 1.04E-03 |
| 31 | GO:0010021: amylopectin biosynthetic process | 1.04E-03 |
| 32 | GO:0006461: protein complex assembly | 1.31E-03 |
| 33 | GO:0006810: transport | 1.41E-03 |
| 34 | GO:0010190: cytochrome b6f complex assembly | 1.61E-03 |
| 35 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.61E-03 |
| 36 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.61E-03 |
| 37 | GO:0042549: photosystem II stabilization | 1.61E-03 |
| 38 | GO:0010358: leaf shaping | 1.61E-03 |
| 39 | GO:0010027: thylakoid membrane organization | 1.81E-03 |
| 40 | GO:0042026: protein refolding | 1.93E-03 |
| 41 | GO:1901259: chloroplast rRNA processing | 1.93E-03 |
| 42 | GO:0006458: 'de novo' protein folding | 1.93E-03 |
| 43 | GO:0030488: tRNA methylation | 1.93E-03 |
| 44 | GO:0050829: defense response to Gram-negative bacterium | 2.27E-03 |
| 45 | GO:0009645: response to low light intensity stimulus | 2.27E-03 |
| 46 | GO:0006400: tRNA modification | 2.27E-03 |
| 47 | GO:0055114: oxidation-reduction process | 2.48E-03 |
| 48 | GO:0048564: photosystem I assembly | 2.63E-03 |
| 49 | GO:0008610: lipid biosynthetic process | 2.63E-03 |
| 50 | GO:0005978: glycogen biosynthetic process | 2.63E-03 |
| 51 | GO:0032544: plastid translation | 3.00E-03 |
| 52 | GO:0044030: regulation of DNA methylation | 3.00E-03 |
| 53 | GO:0017004: cytochrome complex assembly | 3.00E-03 |
| 54 | GO:0006002: fructose 6-phosphate metabolic process | 3.00E-03 |
| 55 | GO:0071482: cellular response to light stimulus | 3.00E-03 |
| 56 | GO:0009735: response to cytokinin | 3.07E-03 |
| 57 | GO:0010206: photosystem II repair | 3.40E-03 |
| 58 | GO:0000373: Group II intron splicing | 3.40E-03 |
| 59 | GO:0000902: cell morphogenesis | 3.40E-03 |
| 60 | GO:0006098: pentose-phosphate shunt | 3.40E-03 |
| 61 | GO:1900865: chloroplast RNA modification | 3.81E-03 |
| 62 | GO:0005982: starch metabolic process | 3.81E-03 |
| 63 | GO:0010205: photoinhibition | 3.81E-03 |
| 64 | GO:0019538: protein metabolic process | 4.23E-03 |
| 65 | GO:0045036: protein targeting to chloroplast | 4.23E-03 |
| 66 | GO:0006352: DNA-templated transcription, initiation | 4.67E-03 |
| 67 | GO:0010628: positive regulation of gene expression | 5.60E-03 |
| 68 | GO:0005986: sucrose biosynthetic process | 5.60E-03 |
| 69 | GO:0006096: glycolytic process | 6.08E-03 |
| 70 | GO:0010020: chloroplast fission | 6.09E-03 |
| 71 | GO:0019253: reductive pentose-phosphate cycle | 6.09E-03 |
| 72 | GO:0006541: glutamine metabolic process | 6.09E-03 |
| 73 | GO:0080188: RNA-directed DNA methylation | 6.59E-03 |
| 74 | GO:0005985: sucrose metabolic process | 6.59E-03 |
| 75 | GO:0090351: seedling development | 6.59E-03 |
| 76 | GO:0009225: nucleotide-sugar metabolic process | 6.59E-03 |
| 77 | GO:0010025: wax biosynthetic process | 7.10E-03 |
| 78 | GO:0019762: glucosinolate catabolic process | 7.10E-03 |
| 79 | GO:0007010: cytoskeleton organization | 7.63E-03 |
| 80 | GO:0009695: jasmonic acid biosynthetic process | 8.18E-03 |
| 81 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.18E-03 |
| 82 | GO:0009753: response to jasmonic acid | 8.18E-03 |
| 83 | GO:0031408: oxylipin biosynthetic process | 8.73E-03 |
| 84 | GO:0016998: cell wall macromolecule catabolic process | 8.73E-03 |
| 85 | GO:0061077: chaperone-mediated protein folding | 8.73E-03 |
| 86 | GO:0016226: iron-sulfur cluster assembly | 9.30E-03 |
| 87 | GO:0016117: carotenoid biosynthetic process | 1.11E-02 |
| 88 | GO:0009793: embryo development ending in seed dormancy | 1.15E-02 |
| 89 | GO:0010268: brassinosteroid homeostasis | 1.24E-02 |
| 90 | GO:0006814: sodium ion transport | 1.30E-02 |
| 91 | GO:0009646: response to absence of light | 1.30E-02 |
| 92 | GO:0019252: starch biosynthetic process | 1.37E-02 |
| 93 | GO:0009791: post-embryonic development | 1.37E-02 |
| 94 | GO:0016132: brassinosteroid biosynthetic process | 1.43E-02 |
| 95 | GO:0080156: mitochondrial mRNA modification | 1.43E-02 |
| 96 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.43E-02 |
| 97 | GO:0019761: glucosinolate biosynthetic process | 1.50E-02 |
| 98 | GO:0032502: developmental process | 1.50E-02 |
| 99 | GO:0030163: protein catabolic process | 1.57E-02 |
| 100 | GO:0016125: sterol metabolic process | 1.64E-02 |
| 101 | GO:0071805: potassium ion transmembrane transport | 1.72E-02 |
| 102 | GO:0001666: response to hypoxia | 1.86E-02 |
| 103 | GO:0009816: defense response to bacterium, incompatible interaction | 1.94E-02 |
| 104 | GO:0010411: xyloglucan metabolic process | 2.09E-02 |
| 105 | GO:0018298: protein-chromophore linkage | 2.25E-02 |
| 106 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.53E-02 |
| 107 | GO:0009867: jasmonic acid mediated signaling pathway | 2.66E-02 |
| 108 | GO:0006631: fatty acid metabolic process | 3.01E-02 |
| 109 | GO:0042546: cell wall biogenesis | 3.28E-02 |
| 110 | GO:0009644: response to high light intensity | 3.37E-02 |
| 111 | GO:0032259: methylation | 3.45E-02 |
| 112 | GO:0006629: lipid metabolic process | 3.60E-02 |
| 113 | GO:0071555: cell wall organization | 3.75E-02 |
| 114 | GO:0006364: rRNA processing | 3.94E-02 |
| 115 | GO:0006813: potassium ion transport | 3.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 4 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 5 | GO:0004222: metalloendopeptidase activity | 5.12E-07 |
| 6 | GO:0004176: ATP-dependent peptidase activity | 6.45E-07 |
| 7 | GO:0004033: aldo-keto reductase (NADP) activity | 1.31E-06 |
| 8 | GO:0008237: metallopeptidase activity | 5.70E-06 |
| 9 | GO:0016149: translation release factor activity, codon specific | 9.15E-06 |
| 10 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.71E-05 |
| 11 | GO:0003867: 4-aminobutyrate transaminase activity | 1.46E-04 |
| 12 | GO:0008568: microtubule-severing ATPase activity | 1.46E-04 |
| 13 | GO:0004321: fatty-acyl-CoA synthase activity | 1.46E-04 |
| 14 | GO:0005080: protein kinase C binding | 1.46E-04 |
| 15 | GO:0008242: omega peptidase activity | 1.46E-04 |
| 16 | GO:0030941: chloroplast targeting sequence binding | 1.46E-04 |
| 17 | GO:0010012: steroid 22-alpha hydroxylase activity | 1.46E-04 |
| 18 | GO:0003747: translation release factor activity | 1.56E-04 |
| 19 | GO:0008805: carbon-monoxide oxygenase activity | 3.33E-04 |
| 20 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 3.33E-04 |
| 21 | GO:0034722: gamma-glutamyl-peptidase activity | 3.33E-04 |
| 22 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.33E-04 |
| 23 | GO:0051536: iron-sulfur cluster binding | 5.33E-04 |
| 24 | GO:0070402: NADPH binding | 5.47E-04 |
| 25 | GO:0070330: aromatase activity | 5.47E-04 |
| 26 | GO:0043169: cation binding | 5.47E-04 |
| 27 | GO:0008508: bile acid:sodium symporter activity | 7.83E-04 |
| 28 | GO:0010385: double-stranded methylated DNA binding | 1.04E-03 |
| 29 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.04E-03 |
| 30 | GO:0050378: UDP-glucuronate 4-epimerase activity | 1.04E-03 |
| 31 | GO:0001053: plastid sigma factor activity | 1.04E-03 |
| 32 | GO:0051861: glycolipid binding | 1.04E-03 |
| 33 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.04E-03 |
| 34 | GO:0016987: sigma factor activity | 1.04E-03 |
| 35 | GO:0048038: quinone binding | 1.27E-03 |
| 36 | GO:0018685: alkane 1-monooxygenase activity | 1.31E-03 |
| 37 | GO:0008374: O-acyltransferase activity | 1.31E-03 |
| 38 | GO:0080030: methyl indole-3-acetate esterase activity | 1.61E-03 |
| 39 | GO:0004332: fructose-bisphosphate aldolase activity | 1.61E-03 |
| 40 | GO:0004620: phospholipase activity | 2.27E-03 |
| 41 | GO:0043022: ribosome binding | 2.63E-03 |
| 42 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.72E-03 |
| 43 | GO:0016887: ATPase activity | 2.87E-03 |
| 44 | GO:0016207: 4-coumarate-CoA ligase activity | 3.40E-03 |
| 45 | GO:0030234: enzyme regulator activity | 4.23E-03 |
| 46 | GO:0044183: protein binding involved in protein folding | 4.67E-03 |
| 47 | GO:0047372: acylglycerol lipase activity | 4.67E-03 |
| 48 | GO:0008131: primary amine oxidase activity | 6.09E-03 |
| 49 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 6.09E-03 |
| 50 | GO:0016874: ligase activity | 6.89E-03 |
| 51 | GO:0031409: pigment binding | 7.10E-03 |
| 52 | GO:0015079: potassium ion transmembrane transporter activity | 8.18E-03 |
| 53 | GO:0043424: protein histidine kinase binding | 8.18E-03 |
| 54 | GO:0004519: endonuclease activity | 8.33E-03 |
| 55 | GO:0004402: histone acetyltransferase activity | 1.17E-02 |
| 56 | GO:0003824: catalytic activity | 1.18E-02 |
| 57 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.43E-02 |
| 58 | GO:0016491: oxidoreductase activity | 1.55E-02 |
| 59 | GO:0016759: cellulose synthase activity | 1.64E-02 |
| 60 | GO:0051213: dioxygenase activity | 1.86E-02 |
| 61 | GO:0008168: methyltransferase activity | 1.89E-02 |
| 62 | GO:0016168: chlorophyll binding | 1.94E-02 |
| 63 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.09E-02 |
| 64 | GO:0008236: serine-type peptidase activity | 2.17E-02 |
| 65 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.20E-02 |
| 66 | GO:0050660: flavin adenine dinucleotide binding | 2.28E-02 |
| 67 | GO:0008233: peptidase activity | 2.40E-02 |
| 68 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.66E-02 |
| 69 | GO:0042393: histone binding | 2.92E-02 |
| 70 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.92E-02 |
| 71 | GO:0016787: hydrolase activity | 3.19E-02 |
| 72 | GO:0005198: structural molecule activity | 3.47E-02 |
| 73 | GO:0005506: iron ion binding | 3.68E-02 |
| 74 | GO:0009055: electron carrier activity | 3.86E-02 |
| 75 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.94E-02 |
| 76 | GO:0046872: metal ion binding | 4.11E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009571: proplastid stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.67E-29 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 5.45E-19 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.17E-10 |
| 6 | GO:0009941: chloroplast envelope | 1.29E-07 |
| 7 | GO:0009570: chloroplast stroma | 1.34E-07 |
| 8 | GO:0009782: photosystem I antenna complex | 1.46E-04 |
| 9 | GO:0009534: chloroplast thylakoid | 2.26E-04 |
| 10 | GO:0009536: plastid | 9.93E-04 |
| 11 | GO:0009526: plastid envelope | 1.04E-03 |
| 12 | GO:0009579: thylakoid | 1.05E-03 |
| 13 | GO:0016021: integral component of membrane | 1.27E-03 |
| 14 | GO:0055035: plastid thylakoid membrane | 1.31E-03 |
| 15 | GO:0031359: integral component of chloroplast outer membrane | 2.27E-03 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 2.27E-03 |
| 17 | GO:0009501: amyloplast | 2.63E-03 |
| 18 | GO:0030095: chloroplast photosystem II | 6.09E-03 |
| 19 | GO:0030076: light-harvesting complex | 6.59E-03 |
| 20 | GO:0009706: chloroplast inner membrane | 7.32E-03 |
| 21 | GO:0042651: thylakoid membrane | 8.18E-03 |
| 22 | GO:0009654: photosystem II oxygen evolving complex | 8.18E-03 |
| 23 | GO:0010287: plastoglobule | 8.69E-03 |
| 24 | GO:0009543: chloroplast thylakoid lumen | 9.17E-03 |
| 25 | GO:0009523: photosystem II | 1.37E-02 |
| 26 | GO:0019898: extrinsic component of membrane | 1.37E-02 |
| 27 | GO:0032580: Golgi cisterna membrane | 1.64E-02 |
| 28 | GO:0046658: anchored component of plasma membrane | 1.68E-02 |
| 29 | GO:0010319: stromule | 1.72E-02 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 1.86E-02 |
| 31 | GO:0009707: chloroplast outer membrane | 2.25E-02 |
| 32 | GO:0031969: chloroplast membrane | 2.44E-02 |
| 33 | GO:0031977: thylakoid lumen | 3.01E-02 |
| 34 | GO:0043231: intracellular membrane-bounded organelle | 3.96E-02 |