co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G66580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043461: proton-transporting ATP synthase complex assembly	0.00E+00
2	GO:0006412: translation	1.83E-06
3	GO:0000494: box C/D snoRNA 3'-end processing	1.48E-05
4	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.48E-05
5	GO:1990258: histone glutamine methylation	1.48E-05
6	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.48E-05
7	GO:0006430: lysyl-tRNA aminoacylation	1.48E-05
8	GO:0000027: ribosomal large subunit assembly	2.10E-05
9	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	3.88E-05
10	GO:0006556: S-adenosylmethionine biosynthetic process	6.95E-05
11	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	6.95E-05
12	GO:1902626: assembly of large subunit precursor of preribosome	6.95E-05
13	GO:0006011: UDP-glucose metabolic process	6.95E-05
14	GO:0042274: ribosomal small subunit biogenesis	1.45E-04
15	GO:0033356: UDP-L-arabinose metabolic process	1.45E-04
16	GO:0006099: tricarboxylic acid cycle	1.71E-04
17	GO:0071493: cellular response to UV-B	1.88E-04
18	GO:0031167: rRNA methylation	1.88E-04
19	GO:0000741: karyogamy	2.34E-04
20	GO:0009423: chorismate biosynthetic process	2.82E-04
21	GO:0006364: rRNA processing	2.90E-04
22	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.32E-04
23	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.84E-04
24	GO:0009553: embryo sac development	4.00E-04
25	GO:0001510: RNA methylation	4.37E-04
26	GO:0010497: plasmodesmata-mediated intercellular transport	4.37E-04
27	GO:0010262: somatic embryogenesis	4.37E-04
28	GO:0007338: single fertilization	4.93E-04
29	GO:2000280: regulation of root development	5.49E-04
30	GO:0006032: chitin catabolic process	6.08E-04
31	GO:0009073: aromatic amino acid family biosynthetic process	6.67E-04
32	GO:0000272: polysaccharide catabolic process	6.67E-04
33	GO:0048467: gynoecium development	8.55E-04
34	GO:0000162: tryptophan biosynthetic process	9.85E-04
35	GO:0080147: root hair cell development	1.05E-03
36	GO:0016998: cell wall macromolecule catabolic process	1.19E-03
37	GO:0006730: one-carbon metabolic process	1.26E-03
38	GO:0009693: ethylene biosynthetic process	1.34E-03
39	GO:0040007: growth	1.34E-03
40	GO:0046686: response to cadmium ion	1.52E-03
41	GO:0008033: tRNA processing	1.57E-03
42	GO:0010501: RNA secondary structure unwinding	1.57E-03
43	GO:0010197: polar nucleus fusion	1.65E-03
44	GO:0032502: developmental process	1.98E-03
45	GO:0071281: cellular response to iron ion	2.07E-03
46	GO:0009567: double fertilization forming a zygote and endosperm	2.15E-03
47	GO:0009793: embryo development ending in seed dormancy	2.49E-03
48	GO:0030244: cellulose biosynthetic process	2.90E-03
49	GO:0009832: plant-type cell wall biogenesis	3.00E-03
50	GO:0009735: response to cytokinin	3.03E-03
51	GO:0009555: pollen development	3.31E-03
52	GO:0009611: response to wounding	3.38E-03
53	GO:0008283: cell proliferation	4.04E-03
54	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.60E-03
55	GO:0009626: plant-type hypersensitive response	5.80E-03
56	GO:0006413: translational initiation	8.79E-03
57	GO:0010468: regulation of gene expression	1.04E-02
58	GO:0009617: response to bacterium	1.04E-02
59	GO:0042254: ribosome biogenesis	1.27E-02
60	GO:0080167: response to karrikin	1.46E-02
61	GO:0009651: response to salt stress	2.25E-02
62	GO:0009734: auxin-activated signaling pathway	2.46E-02
63	GO:0006511: ubiquitin-dependent protein catabolic process	3.61E-02
64	GO:0071555: cell wall organization	4.79E-02
65	GO:0006979: response to oxidative stress	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0004107: chorismate synthase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	1.63E-06
3	GO:0004824: lysine-tRNA ligase activity	1.48E-05
4	GO:0004048: anthranilate phosphoribosyltransferase activity	1.48E-05
5	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.48E-05
6	GO:1990259: histone-glutamine methyltransferase activity	1.48E-05
7	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.48E-05
8	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.88E-05
9	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.88E-05
10	GO:0008649: rRNA methyltransferase activity	6.95E-05
11	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	6.95E-05
12	GO:0004478: methionine adenosyltransferase activity	6.95E-05
13	GO:0003729: mRNA binding	1.87E-04
14	GO:0004656: procollagen-proline 4-dioxygenase activity	2.82E-04
15	GO:0030515: snoRNA binding	3.32E-04
16	GO:0004564: beta-fructofuranosidase activity	3.84E-04
17	GO:0004575: sucrose alpha-glucosidase activity	5.49E-04
18	GO:0004568: chitinase activity	6.08E-04
19	GO:0008061: chitin binding	9.19E-04
20	GO:0016779: nucleotidyltransferase activity	1.26E-03
21	GO:0010181: FMN binding	1.73E-03
22	GO:0009055: electron carrier activity	2.02E-03
23	GO:0004004: ATP-dependent RNA helicase activity	2.70E-03
24	GO:0004222: metalloendopeptidase activity	3.09E-03
25	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.20E-03
26	GO:0030145: manganese ion binding	3.20E-03
27	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.40E-03
28	GO:0005507: copper ion binding	4.69E-03
29	GO:0045735: nutrient reservoir activity	5.55E-03
30	GO:0008026: ATP-dependent helicase activity	6.57E-03
31	GO:0004386: helicase activity	6.70E-03
32	GO:0019843: rRNA binding	7.37E-03
33	GO:0003743: translation initiation factor activity	1.03E-02
34	GO:0003723: RNA binding	1.17E-02
35	GO:0050660: flavin adenine dinucleotide binding	1.39E-02
36	GO:0005515: protein binding	1.68E-02
37	GO:0046872: metal ion binding	2.48E-02
38	GO:0005524: ATP binding	2.92E-02
39	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.54E-02

Rank	GO Term	Adjusted P value
1	GO:0005730: nucleolus	3.73E-08
2	GO:0005829: cytosol	1.37E-06
3	GO:0009506: plasmodesma	3.37E-06
4	GO:0005840: ribosome	6.16E-06
5	GO:0005618: cell wall	1.19E-05
6	GO:0022627: cytosolic small ribosomal subunit	5.54E-05
7	GO:0022625: cytosolic large ribosomal subunit	1.04E-04
8	GO:0031428: box C/D snoRNP complex	2.34E-04
9	GO:0022626: cytosolic ribosome	3.43E-04
10	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.84E-04
11	GO:0045273: respiratory chain complex II	3.84E-04
12	GO:0015030: Cajal body	5.49E-04
13	GO:0032040: small-subunit processome	7.29E-04
14	GO:0048046: apoplast	7.63E-04
15	GO:0031012: extracellular matrix	7.91E-04
16	GO:0005758: mitochondrial intermembrane space	1.05E-03
17	GO:0070469: respiratory chain	1.12E-03
18	GO:0016592: mediator complex	1.98E-03
19	GO:0015934: large ribosomal subunit	3.20E-03
20	GO:0005774: vacuolar membrane	4.15E-03
21	GO:0031225: anchored component of membrane	5.14E-03
22	GO:0005802: trans-Golgi network	5.27E-03
23	GO:0005768: endosome	5.99E-03
24	GO:0005773: vacuole	7.13E-03
25	GO:0009536: plastid	8.17E-03
26	GO:0009505: plant-type cell wall	8.35E-03
27	GO:0005794: Golgi apparatus	8.47E-03
28	GO:0009507: chloroplast	2.41E-02
29	GO:0005739: mitochondrion	3.79E-02
30	GO:0005886: plasma membrane	3.87E-02
31	GO:0016020: membrane	4.30E-02
32	GO:0005622: intracellular	4.37E-02
33	GO:0009570: chloroplast stroma	4.38E-02