Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G65540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000188: inactivation of MAPK activity0.00E+00
2GO:0032499: detection of peptidoglycan0.00E+00
3GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
4GO:0007160: cell-matrix adhesion0.00E+00
5GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
6GO:0006903: vesicle targeting0.00E+00
7GO:0009312: oligosaccharide biosynthetic process0.00E+00
8GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
9GO:0010401: pectic galactan metabolic process0.00E+00
10GO:0019481: L-alanine catabolic process, by transamination0.00E+00
11GO:0010793: regulation of mRNA export from nucleus0.00E+00
12GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
13GO:0051553: flavone biosynthetic process0.00E+00
14GO:0006468: protein phosphorylation9.55E-08
15GO:0006024: glycosaminoglycan biosynthetic process2.28E-06
16GO:0015012: heparan sulfate proteoglycan biosynthetic process2.28E-06
17GO:0006886: intracellular protein transport9.97E-05
18GO:0009612: response to mechanical stimulus1.13E-04
19GO:0006470: protein dephosphorylation1.44E-04
20GO:0010044: response to aluminum ion1.49E-04
21GO:0006144: purine nucleobase metabolic process2.20E-04
22GO:0009968: negative regulation of signal transduction2.20E-04
23GO:0098702: adenine import across plasma membrane2.20E-04
24GO:0098710: guanine import across plasma membrane2.20E-04
25GO:0016337: single organismal cell-cell adhesion2.20E-04
26GO:0048482: plant ovule morphogenesis2.20E-04
27GO:0019628: urate catabolic process2.20E-04
28GO:0043547: positive regulation of GTPase activity2.20E-04
29GO:0035344: hypoxanthine transport2.20E-04
30GO:0043985: histone H4-R3 methylation2.20E-04
31GO:0006643: membrane lipid metabolic process2.20E-04
32GO:0032491: detection of molecule of fungal origin2.20E-04
33GO:0031338: regulation of vesicle fusion2.20E-04
34GO:0098721: uracil import across plasma membrane2.20E-04
35GO:0046777: protein autophosphorylation4.45E-04
36GO:0080185: effector dependent induction by symbiont of host immune response4.90E-04
37GO:0050684: regulation of mRNA processing4.90E-04
38GO:0052541: plant-type cell wall cellulose metabolic process4.90E-04
39GO:0051645: Golgi localization4.90E-04
40GO:0006212: uracil catabolic process4.90E-04
41GO:0007584: response to nutrient4.90E-04
42GO:0043066: negative regulation of apoptotic process4.90E-04
43GO:0019483: beta-alanine biosynthetic process4.90E-04
44GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine4.90E-04
45GO:0052542: defense response by callose deposition4.90E-04
46GO:0060151: peroxisome localization4.90E-04
47GO:0008219: cell death4.99E-04
48GO:0042742: defense response to bacterium5.91E-04
49GO:0010030: positive regulation of seed germination7.56E-04
50GO:0090630: activation of GTPase activity7.98E-04
51GO:0046621: negative regulation of organ growth7.98E-04
52GO:0015783: GDP-fucose transport7.98E-04
53GO:0006517: protein deglycosylation7.98E-04
54GO:2000034: regulation of seed maturation7.98E-04
55GO:0051646: mitochondrion localization7.98E-04
56GO:0032784: regulation of DNA-templated transcription, elongation7.98E-04
57GO:0090436: leaf pavement cell development7.98E-04
58GO:0009617: response to bacterium9.66E-04
59GO:0006882: cellular zinc ion homeostasis1.14E-03
60GO:0006515: misfolded or incompletely synthesized protein catabolic process1.14E-03
61GO:0048194: Golgi vesicle budding1.14E-03
62GO:0002239: response to oomycetes1.14E-03
63GO:0072334: UDP-galactose transmembrane transport1.14E-03
64GO:0006612: protein targeting to membrane1.14E-03
65GO:0006893: Golgi to plasma membrane transport1.14E-03
66GO:0009399: nitrogen fixation1.14E-03
67GO:0006516: glycoprotein catabolic process1.14E-03
68GO:0071323: cellular response to chitin1.14E-03
69GO:0006486: protein glycosylation1.34E-03
70GO:0006542: glutamine biosynthetic process1.51E-03
71GO:0060548: negative regulation of cell death1.51E-03
72GO:0010107: potassium ion import1.51E-03
73GO:0061088: regulation of sequestering of zinc ion1.51E-03
74GO:0071219: cellular response to molecule of bacterial origin1.51E-03
75GO:0010188: response to microbial phytotoxin1.51E-03
76GO:0006665: sphingolipid metabolic process1.93E-03
77GO:0018344: protein geranylgeranylation1.93E-03
78GO:0010225: response to UV-C1.93E-03
79GO:0006090: pyruvate metabolic process1.93E-03
80GO:0030041: actin filament polymerization1.93E-03
81GO:0005513: detection of calcium ion1.93E-03
82GO:0002229: defense response to oomycetes2.23E-03
83GO:0007264: small GTPase mediated signal transduction2.38E-03
84GO:0048317: seed morphogenesis2.38E-03
85GO:0010337: regulation of salicylic acid metabolic process2.38E-03
86GO:0006014: D-ribose metabolic process2.38E-03
87GO:0000911: cytokinesis by cell plate formation2.86E-03
88GO:0006694: steroid biosynthetic process2.86E-03
89GO:0009423: chorismate biosynthetic process2.86E-03
90GO:0006401: RNA catabolic process3.36E-03
91GO:0010161: red light signaling pathway3.36E-03
92GO:0006955: immune response3.36E-03
93GO:0046470: phosphatidylcholine metabolic process3.36E-03
94GO:0009816: defense response to bacterium, incompatible interaction3.40E-03
95GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.90E-03
96GO:0030162: regulation of proteolysis3.90E-03
97GO:0032875: regulation of DNA endoreduplication3.90E-03
98GO:0009817: defense response to fungus, incompatible interaction4.19E-03
99GO:0009813: flavonoid biosynthetic process4.40E-03
100GO:0043562: cellular response to nitrogen levels4.47E-03
101GO:0006303: double-strand break repair via nonhomologous end joining4.47E-03
102GO:2000031: regulation of salicylic acid mediated signaling pathway4.47E-03
103GO:0060321: acceptance of pollen4.47E-03
104GO:0006367: transcription initiation from RNA polymerase II promoter4.47E-03
105GO:0006499: N-terminal protein myristoylation4.61E-03
106GO:0015780: nucleotide-sugar transport5.06E-03
107GO:0009051: pentose-phosphate shunt, oxidative branch5.06E-03
108GO:0090305: nucleic acid phosphodiester bond hydrolysis5.06E-03
109GO:0045087: innate immune response5.30E-03
110GO:0071577: zinc II ion transmembrane transport5.68E-03
111GO:0000723: telomere maintenance5.68E-03
112GO:0048354: mucilage biosynthetic process involved in seed coat development5.68E-03
113GO:0030148: sphingolipid biosynthetic process6.98E-03
114GO:0009073: aromatic amino acid family biosynthetic process6.98E-03
115GO:0000266: mitochondrial fission7.68E-03
116GO:0010105: negative regulation of ethylene-activated signaling pathway7.68E-03
117GO:0009738: abscisic acid-activated signaling pathway8.15E-03
118GO:2000028: regulation of photoperiodism, flowering8.39E-03
119GO:0030048: actin filament-based movement8.39E-03
120GO:0006807: nitrogen compound metabolic process8.39E-03
121GO:0006108: malate metabolic process8.39E-03
122GO:0006812: cation transport8.58E-03
123GO:0007165: signal transduction8.96E-03
124GO:0048467: gynoecium development9.13E-03
125GO:0035556: intracellular signal transduction9.30E-03
126GO:0070588: calcium ion transmembrane transport9.90E-03
127GO:0009969: xyloglucan biosynthetic process9.90E-03
128GO:0007031: peroxisome organization9.90E-03
129GO:0080188: RNA-directed DNA methylation9.90E-03
130GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.00E-02
131GO:0009620: response to fungus1.20E-02
132GO:0055085: transmembrane transport1.23E-02
133GO:0051260: protein homooligomerization1.32E-02
134GO:0018105: peptidyl-serine phosphorylation1.35E-02
135GO:0031348: negative regulation of defense response1.40E-02
136GO:0009742: brassinosteroid mediated signaling pathway1.40E-02
137GO:2000022: regulation of jasmonic acid mediated signaling pathway1.40E-02
138GO:0006012: galactose metabolic process1.49E-02
139GO:0042127: regulation of cell proliferation1.58E-02
140GO:0000413: protein peptidyl-prolyl isomerization1.77E-02
141GO:0010087: phloem or xylem histogenesis1.77E-02
142GO:0010118: stomatal movement1.77E-02
143GO:0010182: sugar mediated signaling pathway1.87E-02
144GO:0006885: regulation of pH1.87E-02
145GO:0061025: membrane fusion1.97E-02
146GO:0019252: starch biosynthetic process2.07E-02
147GO:0006623: protein targeting to vacuole2.07E-02
148GO:0009749: response to glucose2.07E-02
149GO:0000302: response to reactive oxygen species2.17E-02
150GO:0010193: response to ozone2.17E-02
151GO:0010150: leaf senescence2.28E-02
152GO:0010090: trichome morphogenesis2.38E-02
153GO:0006310: DNA recombination2.49E-02
154GO:0006904: vesicle docking involved in exocytosis2.60E-02
155GO:0001666: response to hypoxia2.82E-02
156GO:0009627: systemic acquired resistance3.05E-02
157GO:0042128: nitrate assimilation3.05E-02
158GO:0006888: ER to Golgi vesicle-mediated transport3.17E-02
159GO:0016049: cell growth3.29E-02
160GO:0009611: response to wounding3.32E-02
161GO:0016310: phosphorylation3.42E-02
162GO:0048767: root hair elongation3.53E-02
163GO:0010043: response to zinc ion3.78E-02
164GO:0009867: jasmonic acid mediated signaling pathway4.03E-02
165GO:0016051: carbohydrate biosynthetic process4.03E-02
166GO:0006099: tricarboxylic acid cycle4.16E-02
167GO:0030001: metal ion transport4.43E-02
168GO:0010200: response to chitin4.51E-02
169GO:0006887: exocytosis4.56E-02
170GO:0006897: endocytosis4.56E-02
171GO:0016192: vesicle-mediated transport4.58E-02
172GO:0050832: defense response to fungus4.67E-02
173GO:0046686: response to cadmium ion4.70E-02
174GO:0051707: response to other organism4.83E-02
RankGO TermAdjusted P value
1GO:0033749: histone demethylase activity (H4-R3 specific)0.00E+00
2GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
3GO:0033759: flavone synthase activity0.00E+00
4GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
5GO:0003837: beta-ureidopropionase activity0.00E+00
6GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
7GO:0033746: histone demethylase activity (H3-R2 specific)0.00E+00
8GO:0005092: GDP-dissociation inhibitor activity0.00E+00
9GO:0004846: urate oxidase activity0.00E+00
10GO:2001080: chitosan binding0.00E+00
11GO:0017137: Rab GTPase binding4.30E-07
12GO:0005524: ATP binding1.39E-06
13GO:0004674: protein serine/threonine kinase activity5.43E-06
14GO:0016301: kinase activity1.77E-05
15GO:0019199: transmembrane receptor protein kinase activity3.46E-05
16GO:0005096: GTPase activator activity4.53E-05
17GO:0004672: protein kinase activity9.75E-05
18GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.20E-04
19GO:1901149: salicylic acid binding2.20E-04
20GO:0015085: calcium ion transmembrane transporter activity2.20E-04
21GO:0015208: guanine transmembrane transporter activity2.20E-04
22GO:0015294: solute:cation symporter activity2.20E-04
23GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.20E-04
24GO:0015207: adenine transmembrane transporter activity2.20E-04
25GO:0004713: protein tyrosine kinase activity4.00E-04
26GO:0038199: ethylene receptor activity4.90E-04
27GO:0045140: inositol phosphoceramide synthase activity4.90E-04
28GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity4.90E-04
29GO:0030742: GTP-dependent protein binding4.90E-04
30GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity7.98E-04
31GO:0005457: GDP-fucose transmembrane transporter activity7.98E-04
32GO:0005093: Rab GDP-dissociation inhibitor activity7.98E-04
33GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity7.98E-04
34GO:0008253: 5'-nucleotidase activity7.98E-04
35GO:0004383: guanylate cyclase activity7.98E-04
36GO:0004725: protein tyrosine phosphatase activity8.40E-04
37GO:0005385: zinc ion transmembrane transporter activity9.27E-04
38GO:0033612: receptor serine/threonine kinase binding1.12E-03
39GO:0051740: ethylene binding1.14E-03
40GO:0001653: peptide receptor activity1.14E-03
41GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.14E-03
42GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor1.51E-03
43GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity1.51E-03
44GO:0015210: uracil transmembrane transporter activity1.51E-03
45GO:0004470: malic enzyme activity1.51E-03
46GO:0004930: G-protein coupled receptor activity1.51E-03
47GO:0005515: protein binding1.85E-03
48GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.93E-03
49GO:0004356: glutamate-ammonia ligase activity1.93E-03
50GO:0045431: flavonol synthase activity1.93E-03
51GO:0015301: anion:anion antiporter activity1.93E-03
52GO:0005459: UDP-galactose transmembrane transporter activity1.93E-03
53GO:0005452: inorganic anion exchanger activity1.93E-03
54GO:0008948: oxaloacetate decarboxylase activity1.93E-03
55GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.93E-03
56GO:0004040: amidase activity1.93E-03
57GO:0015562: efflux transmembrane transporter activity2.38E-03
58GO:0004012: phospholipid-translocating ATPase activity2.86E-03
59GO:0004747: ribokinase activity2.86E-03
60GO:0004656: procollagen-proline 4-dioxygenase activity2.86E-03
61GO:0004722: protein serine/threonine phosphatase activity3.00E-03
62GO:0042162: telomeric DNA binding3.36E-03
63GO:0009931: calcium-dependent protein serine/threonine kinase activity3.59E-03
64GO:0004683: calmodulin-dependent protein kinase activity3.78E-03
65GO:0004721: phosphoprotein phosphatase activity3.78E-03
66GO:0004714: transmembrane receptor protein tyrosine kinase activity3.90E-03
67GO:0004034: aldose 1-epimerase activity3.90E-03
68GO:0008865: fructokinase activity3.90E-03
69GO:0005516: calmodulin binding4.41E-03
70GO:0004630: phospholipase D activity4.47E-03
71GO:0005267: potassium channel activity4.47E-03
72GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.47E-03
73GO:0008417: fucosyltransferase activity5.06E-03
74GO:0004003: ATP-dependent DNA helicase activity5.06E-03
75GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.06E-03
76GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.30E-03
77GO:0004673: protein histidine kinase activity6.32E-03
78GO:0005509: calcium ion binding6.43E-03
79GO:0000155: phosphorelay sensor kinase activity8.39E-03
80GO:0005388: calcium-transporting ATPase activity8.39E-03
81GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.39E-03
82GO:0003774: motor activity9.13E-03
83GO:0008061: chitin binding9.90E-03
84GO:0031418: L-ascorbic acid binding1.15E-02
85GO:0003954: NADH dehydrogenase activity1.15E-02
86GO:0043130: ubiquitin binding1.15E-02
87GO:0008324: cation transmembrane transporter activity1.23E-02
88GO:0003779: actin binding1.28E-02
89GO:0035251: UDP-glucosyltransferase activity1.32E-02
90GO:0046872: metal ion binding1.46E-02
91GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.69E-02
92GO:0005451: monovalent cation:proton antiporter activity1.77E-02
93GO:0046873: metal ion transmembrane transporter activity1.87E-02
94GO:0030276: clathrin binding1.87E-02
95GO:0001085: RNA polymerase II transcription factor binding1.87E-02
96GO:0016853: isomerase activity1.97E-02
97GO:0015299: solute:proton antiporter activity1.97E-02
98GO:0004872: receptor activity2.07E-02
99GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.12E-02
100GO:0004518: nuclease activity2.28E-02
101GO:0015385: sodium:proton antiporter activity2.38E-02
102GO:0003684: damaged DNA binding2.49E-02
103GO:0016791: phosphatase activity2.49E-02
104GO:0008375: acetylglucosaminyltransferase activity3.05E-02
105GO:0030145: manganese ion binding3.78E-02
106GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.78E-02
107GO:0000987: core promoter proximal region sequence-specific DNA binding4.16E-02
108GO:0004712: protein serine/threonine/tyrosine kinase activity4.30E-02
109GO:0008422: beta-glucosidase activity4.30E-02
110GO:0030246: carbohydrate binding4.65E-02
111GO:0005484: SNAP receptor activity4.83E-02
RankGO TermAdjusted P value
1GO:0008305: integrin complex0.00E+00
2GO:0005674: transcription factor TFIIF complex0.00E+00
3GO:0005886: plasma membrane1.16E-09
4GO:0016021: integral component of membrane3.38E-06
5GO:0043564: Ku70:Ku80 complex2.20E-04
6GO:0045252: oxoglutarate dehydrogenase complex2.20E-04
7GO:0005911: cell-cell junction2.20E-04
8GO:0005794: Golgi apparatus2.36E-04
9GO:0005802: trans-Golgi network3.46E-04
10GO:0031304: intrinsic component of mitochondrial inner membrane4.90E-04
11GO:0005968: Rab-protein geranylgeranyltransferase complex1.14E-03
12GO:0005768: endosome1.72E-03
13GO:0005737: cytoplasm2.03E-03
14GO:0030127: COPII vesicle coat2.38E-03
15GO:0005783: endoplasmic reticulum2.59E-03
16GO:0009506: plasmodesma2.75E-03
17GO:0030173: integral component of Golgi membrane2.86E-03
18GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.36E-03
19GO:0000139: Golgi membrane3.86E-03
20GO:0030131: clathrin adaptor complex3.90E-03
21GO:0000784: nuclear chromosome, telomeric region4.47E-03
22GO:0030665: clathrin-coated vesicle membrane5.68E-03
23GO:0031902: late endosome membrane6.30E-03
24GO:0016459: myosin complex6.32E-03
25GO:0030125: clathrin vesicle coat6.32E-03
26GO:0017119: Golgi transport complex6.32E-03
27GO:0048471: perinuclear region of cytoplasm6.98E-03
28GO:0005774: vacuolar membrane8.82E-03
29GO:0005795: Golgi stack9.90E-03
30GO:0030176: integral component of endoplasmic reticulum membrane9.90E-03
31GO:0005829: cytosol1.04E-02
32GO:0043234: protein complex1.07E-02
33GO:0010008: endosome membrane1.13E-02
34GO:0005905: clathrin-coated pit1.32E-02
35GO:0016020: membrane1.38E-02
36GO:0005789: endoplasmic reticulum membrane1.54E-02
37GO:0009524: phragmoplast1.74E-02
38GO:0009504: cell plate2.07E-02
39GO:0000145: exocyst2.28E-02
40GO:0071944: cell periphery2.38E-02
41GO:0032580: Golgi cisterna membrane2.49E-02
42GO:0005667: transcription factor complex3.05E-02
43GO:0005618: cell wall3.05E-02
44GO:0019005: SCF ubiquitin ligase complex3.41E-02
45GO:0009505: plant-type cell wall3.44E-02
46GO:0000325: plant-type vacuole3.78E-02
47GO:0005777: peroxisome3.83E-02
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Gene type



Gene DE type