co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
2	GO:0009268: response to pH	0.00E+00
3	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
4	GO:0048438: floral whorl development	1.04E-05
5	GO:0031539: positive regulation of anthocyanin metabolic process	1.04E-05
6	GO:0010220: positive regulation of vernalization response	2.78E-05
7	GO:1900386: positive regulation of flavonol biosynthetic process	2.78E-05
8	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.77E-05
9	GO:0071492: cellular response to UV-A	5.03E-05
10	GO:0080167: response to karrikin	5.04E-05
11	GO:0009963: positive regulation of flavonoid biosynthetic process	7.70E-05
12	GO:0009813: flavonoid biosynthetic process	8.34E-05
13	GO:0071486: cellular response to high light intensity	1.07E-04
14	GO:0009765: photosynthesis, light harvesting	1.07E-04
15	GO:0000060: protein import into nucleus, translocation	1.74E-04
16	GO:0006796: phosphate-containing compound metabolic process	1.74E-04
17	GO:0010224: response to UV-B	1.94E-04
18	GO:0010076: maintenance of floral meristem identity	2.11E-04
19	GO:0010077: maintenance of inflorescence meristem identity	2.11E-04
20	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.90E-04
21	GO:0010099: regulation of photomorphogenesis	3.32E-04
22	GO:0051555: flavonol biosynthetic process	4.63E-04
23	GO:0009698: phenylpropanoid metabolic process	5.09E-04
24	GO:0009739: response to gibberellin	5.17E-04
25	GO:0010582: floral meristem determinacy	5.55E-04
26	GO:0018107: peptidyl-threonine phosphorylation	6.04E-04
27	GO:0019853: L-ascorbic acid biosynthetic process	7.02E-04
28	GO:0009225: nucleotide-sugar metabolic process	7.02E-04
29	GO:0042753: positive regulation of circadian rhythm	7.53E-04
30	GO:0010017: red or far-red light signaling pathway	9.65E-04
31	GO:0009411: response to UV	1.02E-03
32	GO:0010584: pollen exine formation	1.08E-03
33	GO:0009958: positive gravitropism	1.25E-03
34	GO:0016125: sterol metabolic process	1.63E-03
35	GO:0009611: response to wounding	2.23E-03
36	GO:0010218: response to far red light	2.33E-03
37	GO:0045893: positive regulation of transcription, DNA-templated	2.49E-03
38	GO:0006631: fatty acid metabolic process	2.88E-03
39	GO:0009640: photomorphogenesis	3.04E-03
40	GO:0010114: response to red light	3.04E-03
41	GO:0000165: MAPK cascade	3.46E-03
42	GO:0009585: red, far-red light phototransduction	3.72E-03
43	GO:0009909: regulation of flower development	3.98E-03
44	GO:0009740: gibberellic acid mediated signaling pathway	4.54E-03
45	GO:0030154: cell differentiation	4.75E-03
46	GO:0018105: peptidyl-serine phosphorylation	4.82E-03
47	GO:0009733: response to auxin	4.89E-03
48	GO:0009742: brassinosteroid mediated signaling pathway	4.92E-03
49	GO:0009845: seed germination	5.83E-03
50	GO:0006413: translational initiation	6.56E-03
51	GO:0007623: circadian rhythm	6.89E-03
52	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	8.85E-03
53	GO:0009737: response to abscisic acid	9.27E-03
54	GO:0009723: response to ethylene	1.03E-02
55	GO:0016042: lipid catabolic process	1.40E-02
56	GO:0009751: response to salicylic acid	1.42E-02
57	GO:0006629: lipid metabolic process	1.43E-02
58	GO:0009753: response to jasmonic acid	1.50E-02
59	GO:0008152: metabolic process	1.53E-02
60	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.75E-02
61	GO:0009416: response to light stimulus	2.15E-02
62	GO:0035556: intracellular signal transduction	2.24E-02
63	GO:0006351: transcription, DNA-templated	2.42E-02
64	GO:0055114: oxidation-reduction process	3.77E-02
65	GO:0006355: regulation of transcription, DNA-templated	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
2	GO:0045486: naringenin 3-dioxygenase activity	1.04E-05
3	GO:0008253: 5'-nucleotidase activity	5.03E-05
4	GO:0045430: chalcone isomerase activity	1.07E-04
5	GO:0045431: flavonol synthase activity	1.40E-04
6	GO:0016462: pyrophosphatase activity	1.74E-04
7	GO:0004427: inorganic diphosphatase activity	2.50E-04
8	GO:0016207: 4-coumarate-CoA ligase activity	3.74E-04
9	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.84E-04
10	GO:0004860: protein kinase inhibitor activity	5.09E-04
11	GO:0046982: protein heterodimerization activity	6.92E-04
12	GO:0031418: L-ascorbic acid binding	8.05E-04
13	GO:0016168: chlorophyll binding	1.90E-03
14	GO:0008236: serine-type peptidase activity	2.11E-03
15	GO:0004185: serine-type carboxypeptidase activity	3.04E-03
16	GO:0051287: NAD binding	3.46E-03
17	GO:0003690: double-stranded DNA binding	3.81E-03
18	GO:0043565: sequence-specific DNA binding	3.92E-03
19	GO:0016874: ligase activity	4.54E-03
20	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.62E-03
21	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.45E-03
22	GO:0003743: translation initiation factor activity	7.68E-03
23	GO:0000287: magnesium ion binding	9.22E-03
24	GO:0016788: hydrolase activity, acting on ester bonds	9.46E-03
25	GO:0004497: monooxygenase activity	1.09E-02
26	GO:0052689: carboxylic ester hydrolase activity	1.17E-02
27	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.23E-02
28	GO:0042803: protein homodimerization activity	1.27E-02
29	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.33E-02
30	GO:0005515: protein binding	2.23E-02
31	GO:0003677: DNA binding	2.93E-02
32	GO:0005506: iron ion binding	3.52E-02
33	GO:0044212: transcription regulatory region DNA binding	3.56E-02
34	GO:0003824: catalytic activity	3.80E-02
35	GO:0004672: protein kinase activity	4.68E-02
36	GO:0020037: heme binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0005764: lysosome	6.53E-04
2	GO:0009523: photosystem II	1.37E-03
3	GO:0031966: mitochondrial membrane	3.54E-03
4	GO:0005622: intracellular	3.24E-02