co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0006793: phosphorus metabolic process	0.00E+00
4	GO:0080173: male-female gamete recognition during double fertilization	4.31E-05
5	GO:1990022: RNA polymerase III complex localization to nucleus	4.31E-05
6	GO:0044376: RNA polymerase II complex import to nucleus	4.31E-05
7	GO:0051592: response to calcium ion	1.07E-04
8	GO:0019521: D-gluconate metabolic process	1.07E-04
9	GO:0030433: ubiquitin-dependent ERAD pathway	1.37E-04
10	GO:0010351: lithium ion transport	1.84E-04
11	GO:0010272: response to silver ion	1.84E-04
12	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	1.84E-04
13	GO:0034051: negative regulation of plant-type hypersensitive response	1.84E-04
14	GO:0006882: cellular zinc ion homeostasis	2.70E-04
15	GO:0009617: response to bacterium	3.25E-04
16	GO:0080142: regulation of salicylic acid biosynthetic process	3.64E-04
17	GO:0009615: response to virus	3.84E-04
18	GO:0009816: defense response to bacterium, incompatible interaction	4.05E-04
19	GO:0009627: systemic acquired resistance	4.27E-04
20	GO:0009697: salicylic acid biosynthetic process	4.63E-04
21	GO:0006511: ubiquitin-dependent protein catabolic process	4.72E-04
22	GO:0002238: response to molecule of fungal origin	5.67E-04
23	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	5.67E-04
24	GO:0010200: response to chitin	6.22E-04
25	GO:0010555: response to mannitol	6.76E-04
26	GO:2000067: regulation of root morphogenesis	6.76E-04
27	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	6.76E-04
28	GO:0030026: cellular manganese ion homeostasis	7.90E-04
29	GO:0006605: protein targeting	9.08E-04
30	GO:0031540: regulation of anthocyanin biosynthetic process	9.08E-04
31	GO:0043068: positive regulation of programmed cell death	9.08E-04
32	GO:0043562: cellular response to nitrogen levels	1.03E-03
33	GO:0007186: G-protein coupled receptor signaling pathway	1.03E-03
34	GO:0010112: regulation of systemic acquired resistance	1.16E-03
35	GO:0009056: catabolic process	1.16E-03
36	GO:0046685: response to arsenic-containing substance	1.16E-03
37	GO:0006098: pentose-phosphate shunt	1.16E-03
38	GO:0051865: protein autoubiquitination	1.16E-03
39	GO:0043067: regulation of programmed cell death	1.29E-03
40	GO:0030042: actin filament depolymerization	1.29E-03
41	GO:0006032: chitin catabolic process	1.43E-03
42	GO:0055062: phosphate ion homeostasis	1.43E-03
43	GO:0007064: mitotic sister chromatid cohesion	1.43E-03
44	GO:0000272: polysaccharide catabolic process	1.57E-03
45	GO:0009750: response to fructose	1.57E-03
46	GO:0015770: sucrose transport	1.57E-03
47	GO:0006790: sulfur compound metabolic process	1.72E-03
48	GO:0012501: programmed cell death	1.72E-03
49	GO:0015706: nitrate transport	1.72E-03
50	GO:0006807: nitrogen compound metabolic process	1.87E-03
51	GO:0002237: response to molecule of bacterial origin	2.03E-03
52	GO:0009790: embryo development	2.14E-03
53	GO:0046854: phosphatidylinositol phosphorylation	2.19E-03
54	GO:0010167: response to nitrate	2.19E-03
55	GO:0034976: response to endoplasmic reticulum stress	2.36E-03
56	GO:0030150: protein import into mitochondrial matrix	2.52E-03
57	GO:0009737: response to abscisic acid	2.69E-03
58	GO:0006874: cellular calcium ion homeostasis	2.70E-03
59	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.82E-03
60	GO:0016998: cell wall macromolecule catabolic process	2.88E-03
61	GO:0071456: cellular response to hypoxia	3.06E-03
62	GO:0035428: hexose transmembrane transport	3.06E-03
63	GO:0009814: defense response, incompatible interaction	3.06E-03
64	GO:0046323: glucose import	4.02E-03
65	GO:0006814: sodium ion transport	4.23E-03
66	GO:0009749: response to glucose	4.43E-03
67	GO:0042742: defense response to bacterium	4.79E-03
68	GO:0030163: protein catabolic process	5.07E-03
69	GO:0016579: protein deubiquitination	5.75E-03
70	GO:0042128: nitrate assimilation	6.45E-03
71	GO:0016311: dephosphorylation	6.94E-03
72	GO:0010043: response to zinc ion	7.95E-03
73	GO:0048527: lateral root development	7.95E-03
74	GO:0046686: response to cadmium ion	8.41E-03
75	GO:0009744: response to sucrose	1.01E-02
76	GO:0051707: response to other organism	1.01E-02
77	GO:0008643: carbohydrate transport	1.07E-02
78	GO:0006812: cation transport	1.19E-02
79	GO:0042538: hyperosmotic salinity response	1.19E-02
80	GO:0009738: abscisic acid-activated signaling pathway	1.22E-02
81	GO:0051603: proteolysis involved in cellular protein catabolic process	1.28E-02
82	GO:0010224: response to UV-B	1.28E-02
83	GO:0009909: regulation of flower development	1.34E-02
84	GO:0048316: seed development	1.44E-02
85	GO:0009624: response to nematode	1.60E-02
86	GO:0006457: protein folding	1.63E-02
87	GO:0018105: peptidyl-serine phosphorylation	1.64E-02
88	GO:0006468: protein phosphorylation	1.89E-02
89	GO:0009058: biosynthetic process	1.95E-02
90	GO:0009845: seed germination	1.99E-02
91	GO:0010150: leaf senescence	2.36E-02
92	GO:0007166: cell surface receptor signaling pathway	2.60E-02
93	GO:0010468: regulation of gene expression	2.68E-02
94	GO:0015031: protein transport	3.25E-02
95	GO:0016192: vesicle-mediated transport	3.89E-02
96	GO:0046777: protein autophosphorylation	3.94E-02
97	GO:0044550: secondary metabolite biosynthetic process	3.99E-02
98	GO:0006952: defense response	4.15E-02
99	GO:0045454: cell redox homeostasis	4.27E-02
100	GO:0006886: intracellular protein transport	4.37E-02
101	GO:0006629: lipid metabolic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
2	GO:0010296: prenylcysteine methylesterase activity	1.07E-04
3	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	1.07E-04
4	GO:0004298: threonine-type endopeptidase activity	1.24E-04
5	GO:0001664: G-protein coupled receptor binding	1.84E-04
6	GO:0008430: selenium binding	1.84E-04
7	GO:0031683: G-protein beta/gamma-subunit complex binding	1.84E-04
8	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.84E-04
9	GO:0015368: calcium:cation antiporter activity	3.64E-04
10	GO:0015369: calcium:proton antiporter activity	3.64E-04
11	GO:0015145: monosaccharide transmembrane transporter activity	4.63E-04
12	GO:0005516: calmodulin binding	5.52E-04
13	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	5.67E-04
14	GO:0036402: proteasome-activating ATPase activity	5.67E-04
15	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	5.67E-04
16	GO:0008233: peptidase activity	5.83E-04
17	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.76E-04
18	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	6.76E-04
19	GO:0008320: protein transmembrane transporter activity	7.90E-04
20	GO:0008506: sucrose:proton symporter activity	7.90E-04
21	GO:0008121: ubiquinol-cytochrome-c reductase activity	7.90E-04
22	GO:0015491: cation:cation antiporter activity	9.08E-04
23	GO:0003678: DNA helicase activity	1.16E-03
24	GO:0015112: nitrate transmembrane transporter activity	1.29E-03
25	GO:0004568: chitinase activity	1.43E-03
26	GO:0015266: protein channel activity	1.87E-03
27	GO:0017025: TBP-class protein binding	2.19E-03
28	GO:0008061: chitin binding	2.19E-03
29	GO:0030246: carbohydrate binding	2.86E-03
30	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	2.88E-03
31	GO:0022891: substrate-specific transmembrane transporter activity	3.24E-03
32	GO:0003756: protein disulfide isomerase activity	3.43E-03
33	GO:0005515: protein binding	3.77E-03
34	GO:0005355: glucose transmembrane transporter activity	4.23E-03
35	GO:0005509: calcium ion binding	4.33E-03
36	GO:0004843: thiol-dependent ubiquitin-specific protease activity	4.64E-03
37	GO:0061630: ubiquitin protein ligase activity	5.05E-03
38	GO:0009931: calcium-dependent protein serine/threonine kinase activity	6.45E-03
39	GO:0016301: kinase activity	6.53E-03
40	GO:0004683: calmodulin-dependent protein kinase activity	6.69E-03
41	GO:0003924: GTPase activity	7.08E-03
42	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.19E-03
43	GO:0004222: metalloendopeptidase activity	7.69E-03
44	GO:0000987: core promoter proximal region sequence-specific DNA binding	8.74E-03
45	GO:0051537: 2 iron, 2 sulfur cluster binding	1.07E-02
46	GO:0005524: ATP binding	1.07E-02
47	GO:0016887: ATPase activity	1.10E-02
48	GO:0005198: structural molecule activity	1.10E-02
49	GO:0016298: lipase activity	1.28E-02
50	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.50E-02
51	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.50E-02
52	GO:0003779: actin binding	1.57E-02
53	GO:0051082: unfolded protein binding	1.60E-02
54	GO:0016758: transferase activity, transferring hexosyl groups	1.84E-02
55	GO:0030170: pyridoxal phosphate binding	2.02E-02
56	GO:0015144: carbohydrate transmembrane transporter activity	2.13E-02
57	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.25E-02
58	GO:0016757: transferase activity, transferring glycosyl groups	2.26E-02
59	GO:0005351: sugar:proton symporter activity	2.32E-02
60	GO:0008194: UDP-glycosyltransferase activity	2.56E-02
61	GO:0003682: chromatin binding	3.35E-02
62	GO:0004842: ubiquitin-protein transferase activity	3.53E-02
63	GO:0004674: protein serine/threonine kinase activity	3.59E-02
64	GO:0004497: monooxygenase activity	3.76E-02
65	GO:0004871: signal transducer activity	4.41E-02
66	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0019822: P4 peroxisome	0.00E+00
3	GO:0005886: plasma membrane	1.29E-05
4	GO:0005783: endoplasmic reticulum	5.37E-05
5	GO:0000502: proteasome complex	7.15E-05
6	GO:0030134: ER to Golgi transport vesicle	1.07E-04
7	GO:0005839: proteasome core complex	1.24E-04
8	GO:0016020: membrane	1.26E-04
9	GO:0005789: endoplasmic reticulum membrane	3.05E-04
10	GO:0031597: cytosolic proteasome complex	6.76E-04
11	GO:0005801: cis-Golgi network	6.76E-04
12	GO:0031595: nuclear proteasome complex	7.90E-04
13	GO:0031305: integral component of mitochondrial inner membrane	9.08E-04
14	GO:0000326: protein storage vacuole	1.03E-03
15	GO:0019773: proteasome core complex, alpha-subunit complex	1.03E-03
16	GO:0008540: proteasome regulatory particle, base subcomplex	1.29E-03
17	GO:0031012: extracellular matrix	1.87E-03
18	GO:0005750: mitochondrial respiratory chain complex III	2.03E-03
19	GO:0015629: actin cytoskeleton	3.24E-03
20	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.43E-03
21	GO:0016021: integral component of membrane	3.68E-03
22	GO:0005788: endoplasmic reticulum lumen	6.21E-03
23	GO:0005773: vacuole	1.07E-02
24	GO:0005834: heterotrimeric G-protein complex	1.47E-02
25	GO:0005623: cell	1.91E-02
26	GO:0031225: anchored component of membrane	1.97E-02
27	GO:0005622: intracellular	2.24E-02
28	GO:0005774: vacuolar membrane	2.31E-02
29	GO:0009705: plant-type vacuole membrane	2.36E-02
30	GO:0005618: cell wall	2.74E-02
31	GO:0005829: cytosol	2.91E-02
32	GO:0009505: plant-type cell wall	3.20E-02
33	GO:0005874: microtubule	3.67E-02
34	GO:0009506: plasmodesma	4.15E-02
35	GO:0005730: nucleolus	4.31E-02