GO Enrichment Analysis of Co-expressed Genes with
AT1G65070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 2 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 3 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 4 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 6 | GO:0009451: RNA modification | 2.75E-05 |
| 7 | GO:0009853: photorespiration | 4.66E-05 |
| 8 | GO:0009443: pyridoxal 5'-phosphate salvage | 5.34E-05 |
| 9 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.30E-04 |
| 10 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.25E-04 |
| 11 | GO:0009152: purine ribonucleotide biosynthetic process | 3.25E-04 |
| 12 | GO:0046653: tetrahydrofolate metabolic process | 3.25E-04 |
| 13 | GO:0010239: chloroplast mRNA processing | 3.25E-04 |
| 14 | GO:0016556: mRNA modification | 3.25E-04 |
| 15 | GO:0010731: protein glutathionylation | 3.25E-04 |
| 16 | GO:0071483: cellular response to blue light | 4.35E-04 |
| 17 | GO:0019464: glycine decarboxylation via glycine cleavage system | 4.35E-04 |
| 18 | GO:0009107: lipoate biosynthetic process | 5.52E-04 |
| 19 | GO:0006544: glycine metabolic process | 5.52E-04 |
| 20 | GO:0009658: chloroplast organization | 6.43E-04 |
| 21 | GO:0006563: L-serine metabolic process | 6.76E-04 |
| 22 | GO:0042026: protein refolding | 8.05E-04 |
| 23 | GO:0006458: 'de novo' protein folding | 8.05E-04 |
| 24 | GO:0009704: de-etiolation | 1.08E-03 |
| 25 | GO:0048564: photosystem I assembly | 1.08E-03 |
| 26 | GO:0071482: cellular response to light stimulus | 1.23E-03 |
| 27 | GO:0009657: plastid organization | 1.23E-03 |
| 28 | GO:0032259: methylation | 1.28E-03 |
| 29 | GO:0000373: Group II intron splicing | 1.38E-03 |
| 30 | GO:0006098: pentose-phosphate shunt | 1.38E-03 |
| 31 | GO:0009821: alkaloid biosynthetic process | 1.38E-03 |
| 32 | GO:0035999: tetrahydrofolate interconversion | 1.54E-03 |
| 33 | GO:1900865: chloroplast RNA modification | 1.54E-03 |
| 34 | GO:0006352: DNA-templated transcription, initiation | 1.88E-03 |
| 35 | GO:0006415: translational termination | 1.88E-03 |
| 36 | GO:0019684: photosynthesis, light reaction | 1.88E-03 |
| 37 | GO:0006094: gluconeogenesis | 2.25E-03 |
| 38 | GO:0009767: photosynthetic electron transport chain | 2.25E-03 |
| 39 | GO:0005986: sucrose biosynthetic process | 2.25E-03 |
| 40 | GO:0010207: photosystem II assembly | 2.43E-03 |
| 41 | GO:0009058: biosynthetic process | 2.54E-03 |
| 42 | GO:0090351: seedling development | 2.63E-03 |
| 43 | GO:0016575: histone deacetylation | 3.24E-03 |
| 44 | GO:0061077: chaperone-mediated protein folding | 3.46E-03 |
| 45 | GO:0016226: iron-sulfur cluster assembly | 3.68E-03 |
| 46 | GO:0070417: cellular response to cold | 4.36E-03 |
| 47 | GO:0009793: embryo development ending in seed dormancy | 4.65E-03 |
| 48 | GO:0006814: sodium ion transport | 5.09E-03 |
| 49 | GO:0080156: mitochondrial mRNA modification | 5.60E-03 |
| 50 | GO:0080167: response to karrikin | 6.31E-03 |
| 51 | GO:0001666: response to hypoxia | 7.22E-03 |
| 52 | GO:0009631: cold acclimation | 9.61E-03 |
| 53 | GO:0006810: transport | 1.11E-02 |
| 54 | GO:0046686: response to cadmium ion | 1.19E-02 |
| 55 | GO:0009636: response to toxic substance | 1.33E-02 |
| 56 | GO:0006855: drug transmembrane transport | 1.37E-02 |
| 57 | GO:0006364: rRNA processing | 1.51E-02 |
| 58 | GO:0006417: regulation of translation | 1.63E-02 |
| 59 | GO:0006096: glycolytic process | 1.70E-02 |
| 60 | GO:0009626: plant-type hypersensitive response | 1.78E-02 |
| 61 | GO:0006396: RNA processing | 1.98E-02 |
| 62 | GO:0006413: translational initiation | 2.73E-02 |
| 63 | GO:0007623: circadian rhythm | 2.87E-02 |
| 64 | GO:0008380: RNA splicing | 3.25E-02 |
| 65 | GO:0042254: ribosome biogenesis | 3.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 4 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 5 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 6 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 7 | GO:0004519: endonuclease activity | 9.12E-07 |
| 8 | GO:0004033: aldo-keto reductase (NADP) activity | 2.11E-05 |
| 9 | GO:0003723: RNA binding | 3.26E-05 |
| 10 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 5.34E-05 |
| 11 | GO:0003867: 4-aminobutyrate transaminase activity | 5.34E-05 |
| 12 | GO:0030385: ferredoxin:thioredoxin reductase activity | 1.30E-04 |
| 13 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.22E-04 |
| 14 | GO:0070402: NADPH binding | 2.22E-04 |
| 15 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.22E-04 |
| 16 | GO:0016992: lipoate synthase activity | 2.22E-04 |
| 17 | GO:0032947: protein complex scaffold | 2.22E-04 |
| 18 | GO:0050307: sucrose-phosphate phosphatase activity | 2.22E-04 |
| 19 | GO:0008508: bile acid:sodium symporter activity | 3.25E-04 |
| 20 | GO:0048487: beta-tubulin binding | 3.25E-04 |
| 21 | GO:0016149: translation release factor activity, codon specific | 3.25E-04 |
| 22 | GO:0001053: plastid sigma factor activity | 4.35E-04 |
| 23 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.35E-04 |
| 24 | GO:0008453: alanine-glyoxylate transaminase activity | 4.35E-04 |
| 25 | GO:0016987: sigma factor activity | 4.35E-04 |
| 26 | GO:0004372: glycine hydroxymethyltransferase activity | 5.52E-04 |
| 27 | GO:0008168: methyltransferase activity | 6.13E-04 |
| 28 | GO:0004332: fructose-bisphosphate aldolase activity | 6.76E-04 |
| 29 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 8.05E-04 |
| 30 | GO:0043022: ribosome binding | 1.08E-03 |
| 31 | GO:0005198: structural molecule activity | 1.15E-03 |
| 32 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.23E-03 |
| 33 | GO:0003747: translation release factor activity | 1.38E-03 |
| 34 | GO:0016844: strictosidine synthase activity | 1.54E-03 |
| 35 | GO:0044183: protein binding involved in protein folding | 1.88E-03 |
| 36 | GO:0051082: unfolded protein binding | 1.93E-03 |
| 37 | GO:0031072: heat shock protein binding | 2.25E-03 |
| 38 | GO:0008266: poly(U) RNA binding | 2.43E-03 |
| 39 | GO:0051536: iron-sulfur cluster binding | 3.03E-03 |
| 40 | GO:0004407: histone deacetylase activity | 3.03E-03 |
| 41 | GO:0005528: FK506 binding | 3.03E-03 |
| 42 | GO:0003756: protein disulfide isomerase activity | 4.13E-03 |
| 43 | GO:0048038: quinone binding | 5.60E-03 |
| 44 | GO:0015238: drug transmembrane transporter activity | 8.99E-03 |
| 45 | GO:0004222: metalloendopeptidase activity | 9.30E-03 |
| 46 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.12E-02 |
| 47 | GO:0004364: glutathione transferase activity | 1.19E-02 |
| 48 | GO:0043621: protein self-association | 1.30E-02 |
| 49 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.37E-02 |
| 50 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.51E-02 |
| 51 | GO:0016874: ligase activity | 1.86E-02 |
| 52 | GO:0016746: transferase activity, transferring acyl groups | 1.98E-02 |
| 53 | GO:0030170: pyridoxal phosphate binding | 2.46E-02 |
| 54 | GO:0015297: antiporter activity | 2.77E-02 |
| 55 | GO:0003743: translation initiation factor activity | 3.20E-02 |
| 56 | GO:0005215: transporter activity | 3.71E-02 |
| 57 | GO:0000287: magnesium ion binding | 3.86E-02 |
| 58 | GO:0016788: hydrolase activity, acting on ester bonds | 3.96E-02 |
| 59 | GO:0016491: oxidoreductase activity | 4.41E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.31E-20 |
| 3 | GO:0009570: chloroplast stroma | 2.20E-06 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.97E-06 |
| 5 | GO:0009534: chloroplast thylakoid | 6.77E-06 |
| 6 | GO:0043231: intracellular membrane-bounded organelle | 1.80E-05 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.41E-05 |
| 8 | GO:0009344: nitrite reductase complex [NAD(P)H] | 5.34E-05 |
| 9 | GO:0031357: integral component of chloroplast inner membrane | 1.30E-04 |
| 10 | GO:0009941: chloroplast envelope | 9.31E-04 |
| 11 | GO:0009508: plastid chromosome | 2.25E-03 |
| 12 | GO:0010287: plastoglobule | 2.28E-03 |
| 13 | GO:0009543: chloroplast thylakoid lumen | 2.41E-03 |
| 14 | GO:0030095: chloroplast photosystem II | 2.43E-03 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 3.24E-03 |
| 16 | GO:0019898: extrinsic component of membrane | 5.34E-03 |
| 17 | GO:0031969: chloroplast membrane | 6.31E-03 |
| 18 | GO:0010319: stromule | 6.66E-03 |
| 19 | GO:0009295: nucleoid | 6.66E-03 |
| 20 | GO:0030529: intracellular ribonucleoprotein complex | 7.22E-03 |
| 21 | GO:0009536: plastid | 8.81E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 1.94E-02 |
| 23 | GO:0005759: mitochondrial matrix | 2.68E-02 |
| 24 | GO:0016020: membrane | 4.22E-02 |