co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G64390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0009735: response to cytokinin	8.18E-08
4	GO:0090391: granum assembly	3.72E-06
5	GO:0009772: photosynthetic electron transport in photosystem II	7.52E-05
6	GO:0010196: nonphotochemical quenching	7.52E-05
7	GO:0009828: plant-type cell wall loosening	1.18E-04
8	GO:0071588: hydrogen peroxide mediated signaling pathway	1.42E-04
9	GO:0060627: regulation of vesicle-mediated transport	1.42E-04
10	GO:0005980: glycogen catabolic process	1.42E-04
11	GO:0042759: long-chain fatty acid biosynthetic process	1.42E-04
12	GO:0042371: vitamin K biosynthetic process	1.42E-04
13	GO:0010027: thylakoid membrane organization	1.52E-04
14	GO:0015995: chlorophyll biosynthetic process	1.92E-04
15	GO:0006949: syncytium formation	2.13E-04
16	GO:0043255: regulation of carbohydrate biosynthetic process	3.25E-04
17	GO:0010541: acropetal auxin transport	3.25E-04
18	GO:0008616: queuosine biosynthetic process	3.25E-04
19	GO:0015774: polysaccharide transport	3.25E-04
20	GO:0010207: photosystem II assembly	3.70E-04
21	GO:0010025: wax biosynthetic process	4.63E-04
22	GO:0051017: actin filament bundle assembly	5.13E-04
23	GO:0010160: formation of animal organ boundary	5.33E-04
24	GO:0009664: plant-type cell wall organization	5.67E-04
25	GO:0016998: cell wall macromolecule catabolic process	6.19E-04
26	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.35E-04
27	GO:0051513: regulation of monopolar cell growth	7.63E-04
28	GO:0071484: cellular response to light intensity	7.63E-04
29	GO:0009102: biotin biosynthetic process	7.63E-04
30	GO:0051085: chaperone mediated protein folding requiring cofactor	7.63E-04
31	GO:0051639: actin filament network formation	7.63E-04
32	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.63E-04
33	GO:0019048: modulation by virus of host morphology or physiology	7.63E-04
34	GO:0031048: chromatin silencing by small RNA	7.63E-04
35	GO:0010088: phloem development	7.63E-04
36	GO:1901332: negative regulation of lateral root development	7.63E-04
37	GO:0006986: response to unfolded protein	7.63E-04
38	GO:0042335: cuticle development	9.27E-04
39	GO:0051764: actin crosslink formation	1.01E-03
40	GO:0006183: GTP biosynthetic process	1.01E-03
41	GO:0051567: histone H3-K9 methylation	1.01E-03
42	GO:0006665: sphingolipid metabolic process	1.28E-03
43	GO:0048359: mucilage metabolic process involved in seed coat development	1.28E-03
44	GO:0010236: plastoquinone biosynthetic process	1.28E-03
45	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.57E-03
46	GO:0006655: phosphatidylglycerol biosynthetic process	1.57E-03
47	GO:0060918: auxin transport	1.57E-03
48	GO:0010337: regulation of salicylic acid metabolic process	1.57E-03
49	GO:0016458: gene silencing	1.57E-03
50	GO:0042372: phylloquinone biosynthetic process	1.88E-03
51	GO:0010019: chloroplast-nucleus signaling pathway	1.88E-03
52	GO:0019827: stem cell population maintenance	2.56E-03
53	GO:0031540: regulation of anthocyanin biosynthetic process	2.56E-03
54	GO:0009826: unidimensional cell growth	3.15E-03
55	GO:0010206: photosystem II repair	3.31E-03
56	GO:0015780: nucleotide-sugar transport	3.31E-03
57	GO:0042254: ribosome biogenesis	3.38E-03
58	GO:0006779: porphyrin-containing compound biosynthetic process	3.71E-03
59	GO:0042761: very long-chain fatty acid biosynthetic process	3.71E-03
60	GO:0006782: protoporphyrinogen IX biosynthetic process	4.12E-03
61	GO:0006535: cysteine biosynthetic process from serine	4.12E-03
62	GO:0006032: chitin catabolic process	4.12E-03
63	GO:0030422: production of siRNA involved in RNA interference	4.12E-03
64	GO:0009773: photosynthetic electron transport in photosystem I	4.55E-03
65	GO:0018119: peptidyl-cysteine S-nitrosylation	4.55E-03
66	GO:0042538: hyperosmotic salinity response	4.61E-03
67	GO:0009809: lignin biosynthetic process	4.95E-03
68	GO:0008361: regulation of cell size	4.99E-03
69	GO:0016024: CDP-diacylglycerol biosynthetic process	4.99E-03
70	GO:0015979: photosynthesis	5.13E-03
71	GO:0010102: lateral root morphogenesis	5.45E-03
72	GO:0010229: inflorescence development	5.45E-03
73	GO:0006412: translation	5.46E-03
74	GO:0009266: response to temperature stimulus	5.92E-03
75	GO:0048467: gynoecium development	5.92E-03
76	GO:0010540: basipetal auxin transport	5.92E-03
77	GO:0006869: lipid transport	6.13E-03
78	GO:0009825: multidimensional cell growth	6.41E-03
79	GO:0010167: response to nitrate	6.41E-03
80	GO:0010053: root epidermal cell differentiation	6.41E-03
81	GO:0016042: lipid catabolic process	6.86E-03
82	GO:0042023: DNA endoreduplication	6.91E-03
83	GO:0009408: response to heat	7.11E-03
84	GO:0019344: cysteine biosynthetic process	7.42E-03
85	GO:0000027: ribosomal large subunit assembly	7.42E-03
86	GO:0019953: sexual reproduction	7.95E-03
87	GO:0007017: microtubule-based process	7.95E-03
88	GO:0006306: DNA methylation	8.49E-03
89	GO:0030245: cellulose catabolic process	9.05E-03
90	GO:0009414: response to water deprivation	9.32E-03
91	GO:0048443: stamen development	1.02E-02
92	GO:0010091: trichome branching	1.02E-02
93	GO:0080022: primary root development	1.14E-02
94	GO:0009958: positive gravitropism	1.20E-02
95	GO:0006342: chromatin silencing	1.20E-02
96	GO:0045490: pectin catabolic process	1.22E-02
97	GO:0015986: ATP synthesis coupled proton transport	1.26E-02
98	GO:0000302: response to reactive oxygen species	1.39E-02
99	GO:0010583: response to cyclopentenone	1.46E-02
100	GO:0009409: response to cold	1.53E-02
101	GO:0009567: double fertilization forming a zygote and endosperm	1.60E-02
102	GO:0010252: auxin homeostasis	1.60E-02
103	GO:0009639: response to red or far red light	1.60E-02
104	GO:0051607: defense response to virus	1.74E-02
105	GO:0005975: carbohydrate metabolic process	1.81E-02
106	GO:0009816: defense response to bacterium, incompatible interaction	1.88E-02
107	GO:0009658: chloroplast organization	1.89E-02
108	GO:0009627: systemic acquired resistance	1.96E-02
109	GO:0010411: xyloglucan metabolic process	2.03E-02
110	GO:0009817: defense response to fungus, incompatible interaction	2.19E-02
111	GO:0030244: cellulose biosynthetic process	2.19E-02
112	GO:0000160: phosphorelay signal transduction system	2.26E-02
113	GO:0010311: lateral root formation	2.26E-02
114	GO:0010218: response to far red light	2.34E-02
115	GO:0009631: cold acclimation	2.42E-02
116	GO:0048527: lateral root development	2.42E-02
117	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
118	GO:0009637: response to blue light	2.59E-02
119	GO:0034599: cellular response to oxidative stress	2.67E-02
120	GO:0030001: metal ion transport	2.84E-02
121	GO:0009640: photomorphogenesis	3.10E-02
122	GO:0008283: cell proliferation	3.10E-02
123	GO:0010114: response to red light	3.10E-02
124	GO:0009926: auxin polar transport	3.10E-02
125	GO:0042546: cell wall biogenesis	3.19E-02
126	GO:0008643: carbohydrate transport	3.28E-02
127	GO:0071555: cell wall organization	3.57E-02
128	GO:0006486: protein glycosylation	3.83E-02
129	GO:0009736: cytokinin-activated signaling pathway	3.83E-02
130	GO:0051603: proteolysis involved in cellular protein catabolic process	3.93E-02
131	GO:0009733: response to auxin	4.11E-02
132	GO:0006417: regulation of translation	4.12E-02
133	GO:0042545: cell wall modification	4.82E-02
134	GO:0009734: auxin-activated signaling pathway	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
9	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
10	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.42E-04
11	GO:0008184: glycogen phosphorylase activity	1.42E-04
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.42E-04
13	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.42E-04
14	GO:0004645: phosphorylase activity	1.42E-04
15	GO:0019843: rRNA binding	1.64E-04
16	GO:0003938: IMP dehydrogenase activity	3.25E-04
17	GO:0008479: queuine tRNA-ribosyltransferase activity	3.25E-04
18	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.25E-04
19	GO:0004565: beta-galactosidase activity	3.27E-04
20	GO:0001872: (1->3)-beta-D-glucan binding	7.63E-04
21	GO:0035197: siRNA binding	7.63E-04
22	GO:0016851: magnesium chelatase activity	7.63E-04
23	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	7.63E-04
24	GO:0004659: prenyltransferase activity	1.01E-03
25	GO:0009922: fatty acid elongase activity	1.28E-03
26	GO:0004040: amidase activity	1.28E-03
27	GO:0051015: actin filament binding	1.38E-03
28	GO:0030170: pyridoxal phosphate binding	1.44E-03
29	GO:0004130: cytochrome-c peroxidase activity	1.57E-03
30	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.57E-03
31	GO:0016688: L-ascorbate peroxidase activity	1.57E-03
32	GO:0004124: cysteine synthase activity	1.88E-03
33	GO:0015631: tubulin binding	1.88E-03
34	GO:0004017: adenylate kinase activity	1.88E-03
35	GO:0030247: polysaccharide binding	2.05E-03
36	GO:0003735: structural constituent of ribosome	2.38E-03
37	GO:0005544: calcium-dependent phospholipid binding	2.56E-03
38	GO:0052747: sinapyl alcohol dehydrogenase activity	2.56E-03
39	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.56E-03
40	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.31E-03
41	GO:0016788: hydrolase activity, acting on ester bonds	3.38E-03
42	GO:0004568: chitinase activity	4.12E-03
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.29E-03
44	GO:0052689: carboxylic ester hydrolase activity	4.92E-03
45	GO:0008378: galactosyltransferase activity	4.99E-03
46	GO:0004521: endoribonuclease activity	4.99E-03
47	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.99E-03
48	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.05E-03
49	GO:0010329: auxin efflux transmembrane transporter activity	5.45E-03
50	GO:0008081: phosphoric diester hydrolase activity	5.45E-03
51	GO:0005507: copper ion binding	5.67E-03
52	GO:0005528: FK506 binding	7.42E-03
53	GO:0051087: chaperone binding	7.95E-03
54	GO:0004707: MAP kinase activity	8.49E-03
55	GO:0030570: pectate lyase activity	9.62E-03
56	GO:0008810: cellulase activity	9.62E-03
57	GO:0004252: serine-type endopeptidase activity	9.79E-03
58	GO:0008514: organic anion transmembrane transporter activity	1.02E-02
59	GO:0008289: lipid binding	1.08E-02
60	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.20E-02
61	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.39E-02
62	GO:0000156: phosphorelay response regulator activity	1.53E-02
63	GO:0008483: transaminase activity	1.67E-02
64	GO:0005200: structural constituent of cytoskeleton	1.67E-02
65	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.03E-02
66	GO:0008236: serine-type peptidase activity	2.11E-02
67	GO:0030145: manganese ion binding	2.42E-02
68	GO:0051539: 4 iron, 4 sulfur cluster binding	2.84E-02
69	GO:0004185: serine-type carboxypeptidase activity	3.10E-02
70	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02
71	GO:0043621: protein self-association	3.28E-02
72	GO:0003924: GTPase activity	3.46E-02
73	GO:0009055: electron carrier activity	3.71E-02
74	GO:0045330: aspartyl esterase activity	4.12E-02
75	GO:0045735: nutrient reservoir activity	4.32E-02
76	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.42E-02
77	GO:0030599: pectinesterase activity	4.72E-02
78	GO:0003779: actin binding	4.82E-02
79	GO:0051082: unfolded protein binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009534: chloroplast thylakoid	6.91E-11
3	GO:0009579: thylakoid	1.15E-09
4	GO:0009570: chloroplast stroma	1.66E-09
5	GO:0009941: chloroplast envelope	7.53E-07
6	GO:0009535: chloroplast thylakoid membrane	9.99E-07
7	GO:0005618: cell wall	2.16E-06
8	GO:0046658: anchored component of plasma membrane	3.82E-06
9	GO:0005576: extracellular region	4.96E-06
10	GO:0009507: chloroplast	5.69E-06
11	GO:0048046: apoplast	9.40E-06
12	GO:0009543: chloroplast thylakoid lumen	1.27E-05
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.42E-04
14	GO:0009923: fatty acid elongase complex	1.42E-04
15	GO:0009505: plant-type cell wall	2.30E-04
16	GO:0030095: chloroplast photosystem II	3.70E-04
17	GO:0031977: thylakoid lumen	3.82E-04
18	GO:0010007: magnesium chelatase complex	5.33E-04
19	GO:0009509: chromoplast	5.33E-04
20	GO:0005840: ribosome	6.73E-04
21	GO:0032432: actin filament bundle	7.63E-04
22	GO:0005719: nuclear euchromatin	7.63E-04
23	GO:0015630: microtubule cytoskeleton	7.63E-04
24	GO:0031225: anchored component of membrane	1.56E-03
25	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.57E-03
26	GO:0009986: cell surface	2.21E-03
27	GO:0005886: plasma membrane	3.30E-03
28	GO:0015030: Cajal body	3.71E-03
29	GO:0005884: actin filament	4.55E-03
30	GO:0000311: plastid large ribosomal subunit	4.99E-03
31	GO:0005802: trans-Golgi network	6.77E-03
32	GO:0005768: endosome	8.23E-03
33	GO:0015629: actin cytoskeleton	9.62E-03
34	GO:0009536: plastid	1.32E-02
35	GO:0009523: photosystem II	1.33E-02
36	GO:0010319: stromule	1.67E-02
37	GO:0030529: intracellular ribonucleoprotein complex	1.81E-02
38	GO:0016020: membrane	2.53E-02
39	GO:0005856: cytoskeleton	3.37E-02
40	GO:0009506: plasmodesma	3.82E-02
41	GO:0005773: vacuole	4.33E-02
42	GO:0009706: chloroplast inner membrane	4.92E-02