co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G63780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0006364: rRNA processing	3.79E-05
4	GO:0010197: polar nucleus fusion	1.37E-04
5	GO:0045039: protein import into mitochondrial inner membrane	1.37E-04
6	GO:0008333: endosome to lysosome transport	1.37E-04
7	GO:0009855: determination of bilateral symmetry	2.04E-04
8	GO:0046345: abscisic acid catabolic process	2.76E-04
9	GO:0042273: ribosomal large subunit biogenesis	2.76E-04
10	GO:0051205: protein insertion into membrane	2.76E-04
11	GO:0010188: response to microbial phytotoxin	2.76E-04
12	GO:0031365: N-terminal protein amino acid modification	3.53E-04
13	GO:0006461: protein complex assembly	3.53E-04
14	GO:0000741: karyogamy	4.34E-04
15	GO:0080186: developmental vegetative growth	6.07E-04
16	GO:0007338: single fertilization	8.92E-04
17	GO:0009553: embryo sac development	9.73E-04
18	GO:0010162: seed dormancy process	1.10E-03
19	GO:0016485: protein processing	1.20E-03
20	GO:0010072: primary shoot apical meristem specification	1.20E-03
21	GO:0002237: response to molecule of bacterial origin	1.55E-03
22	GO:0007034: vacuolar transport	1.55E-03
23	GO:0046688: response to copper ion	1.67E-03
24	GO:0000027: ribosomal large subunit assembly	1.92E-03
25	GO:0009944: polarity specification of adaxial/abaxial axis	1.92E-03
26	GO:0006825: copper ion transport	2.05E-03
27	GO:0009294: DNA mediated transformation	2.46E-03
28	GO:0010091: trichome branching	2.61E-03
29	GO:0042254: ribosome biogenesis	2.64E-03
30	GO:0042147: retrograde transport, endosome to Golgi	2.75E-03
31	GO:0009960: endosperm development	3.05E-03
32	GO:0006662: glycerol ether metabolic process	3.05E-03
33	GO:0006623: protein targeting to vacuole	3.36E-03
34	GO:0006635: fatty acid beta-oxidation	3.51E-03
35	GO:0009567: double fertilization forming a zygote and endosperm	4.00E-03
36	GO:0006412: translation	5.53E-03
37	GO:0034599: cellular response to oxidative stress	6.58E-03
38	GO:0031347: regulation of defense response	8.68E-03
39	GO:0016569: covalent chromatin modification	1.15E-02
40	GO:0009451: RNA modification	1.80E-02
41	GO:0009617: response to bacterium	2.00E-02
42	GO:0046686: response to cadmium ion	2.64E-02
43	GO:0016192: vesicle-mediated transport	2.91E-02
44	GO:0044550: secondary metabolite biosynthetic process	2.98E-02
45	GO:0045454: cell redox homeostasis	3.19E-02
46	GO:0006886: intracellular protein transport	3.27E-02
47	GO:0032259: methylation	3.59E-02
48	GO:0009751: response to salicylic acid	3.67E-02
49	GO:0006629: lipid metabolic process	3.71E-02

Rank	GO Term	Adjusted P value
1	GO:0016531: copper chaperone activity	1.37E-04
2	GO:0003746: translation elongation factor activity	4.20E-04
3	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	4.34E-04
4	GO:0008235: metalloexopeptidase activity	6.07E-04
5	GO:0008320: protein transmembrane transporter activity	6.07E-04
6	GO:0003723: RNA binding	6.23E-04
7	GO:0001055: RNA polymerase II activity	9.92E-04
8	GO:0000166: nucleotide binding	1.17E-03
9	GO:0001054: RNA polymerase I activity	1.20E-03
10	GO:0004177: aminopeptidase activity	1.20E-03
11	GO:0001056: RNA polymerase III activity	1.31E-03
12	GO:0004407: histone deacetylase activity	1.92E-03
13	GO:0047134: protein-disulfide reductase activity	2.75E-03
14	GO:0004791: thioredoxin-disulfide reductase activity	3.20E-03
15	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.84E-03
16	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.42E-03
17	GO:0050897: cobalt ion binding	5.99E-03
18	GO:0003735: structural constituent of ribosome	6.77E-03
19	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.36E-03
20	GO:0016298: lipase activity	9.59E-03
21	GO:0015035: protein disulfide oxidoreductase activity	1.22E-02
22	GO:0008026: ATP-dependent helicase activity	1.25E-02
23	GO:0005525: GTP binding	1.37E-02
24	GO:0019843: rRNA binding	1.41E-02
25	GO:0008168: methyltransferase activity	2.34E-02
26	GO:0008233: peptidase activity	2.77E-02
27	GO:0004497: monooxygenase activity	2.81E-02
28	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.37E-02
29	GO:0004722: protein serine/threonine phosphatase activity	3.41E-02
30	GO:0016787: hydrolase activity	3.63E-02
31	GO:0003924: GTPase activity	3.71E-02
32	GO:0004519: endonuclease activity	3.93E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0005730: nucleolus	6.45E-08
3	GO:0030134: ER to Golgi transport vesicle	7.88E-05
4	GO:0005771: multivesicular body	4.34E-04
5	GO:0030904: retromer complex	4.34E-04
6	GO:0005801: cis-Golgi network	5.20E-04
7	GO:0005736: DNA-directed RNA polymerase I complex	8.92E-04
8	GO:0005666: DNA-directed RNA polymerase III complex	9.92E-04
9	GO:0000418: DNA-directed RNA polymerase IV complex	1.10E-03
10	GO:0005665: DNA-directed RNA polymerase II, core complex	1.31E-03
11	GO:0005758: mitochondrial intermembrane space	1.92E-03
12	GO:0005783: endoplasmic reticulum	2.11E-03
13	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.84E-03
14	GO:0005840: ribosome	3.01E-03
15	GO:0005739: mitochondrion	6.08E-03
16	GO:0031902: late endosome membrane	7.19E-03
17	GO:0005834: heterotrimeric G-protein complex	1.10E-02
18	GO:0005759: mitochondrial matrix	1.65E-02
19	GO:0005789: endoplasmic reticulum membrane	2.59E-02
20	GO:0022625: cytosolic large ribosomal subunit	2.91E-02
21	GO:0005743: mitochondrial inner membrane	3.52E-02
22	GO:0043231: intracellular membrane-bounded organelle	3.97E-02
23	GO:0005634: nucleus	4.21E-02