Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G62750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006066: alcohol metabolic process0.00E+00
2GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I2.01E-11
9GO:0006810: transport4.02E-08
10GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly6.45E-08
11GO:0019464: glycine decarboxylation via glycine cleavage system1.89E-07
12GO:0006546: glycine catabolic process1.89E-07
13GO:0030388: fructose 1,6-bisphosphate metabolic process2.28E-06
14GO:0009658: chloroplast organization2.95E-06
15GO:0006000: fructose metabolic process8.31E-06
16GO:0015979: photosynthesis9.20E-06
17GO:0019252: starch biosynthetic process9.67E-06
18GO:0009735: response to cytokinin1.15E-05
19GO:0006094: gluconeogenesis2.71E-05
20GO:0005986: sucrose biosynthetic process2.71E-05
21GO:0019253: reductive pentose-phosphate cycle3.31E-05
22GO:0010021: amylopectin biosynthetic process3.46E-05
23GO:0006021: inositol biosynthetic process3.46E-05
24GO:0018298: protein-chromophore linkage4.11E-05
25GO:0009853: photorespiration6.49E-05
26GO:0016117: carotenoid biosynthetic process1.27E-04
27GO:0009704: de-etiolation1.91E-04
28GO:0048564: photosystem I assembly1.91E-04
29GO:0071277: cellular response to calcium ion2.20E-04
30GO:0006659: phosphatidylserine biosynthetic process2.20E-04
31GO:0080093: regulation of photorespiration2.20E-04
32GO:0031998: regulation of fatty acid beta-oxidation2.20E-04
33GO:0010362: negative regulation of anion channel activity by blue light2.20E-04
34GO:0009443: pyridoxal 5'-phosphate salvage2.20E-04
35GO:0051775: response to redox state2.20E-04
36GO:0006002: fructose 6-phosphate metabolic process2.36E-04
37GO:0071482: cellular response to light stimulus2.36E-04
38GO:0018119: peptidyl-cysteine S-nitrosylation4.63E-04
39GO:0097054: L-glutamate biosynthetic process4.90E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process4.90E-04
41GO:0010275: NAD(P)H dehydrogenase complex assembly4.90E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process4.90E-04
43GO:0034755: iron ion transmembrane transport4.90E-04
44GO:0006108: malate metabolic process6.01E-04
45GO:0009767: photosynthetic electron transport chain6.01E-04
46GO:0007623: circadian rhythm7.42E-04
47GO:0006696: ergosterol biosynthetic process7.98E-04
48GO:0000913: preprophase band assembly7.98E-04
49GO:0031022: nuclear migration along microfilament7.98E-04
50GO:0006518: peptide metabolic process7.98E-04
51GO:0009768: photosynthesis, light harvesting in photosystem I1.02E-03
52GO:0061077: chaperone-mediated protein folding1.12E-03
53GO:0016556: mRNA modification1.14E-03
54GO:0043572: plastid fission1.14E-03
55GO:2001141: regulation of RNA biosynthetic process1.14E-03
56GO:0006020: inositol metabolic process1.14E-03
57GO:0006107: oxaloacetate metabolic process1.14E-03
58GO:0006537: glutamate biosynthetic process1.14E-03
59GO:0010731: protein glutathionylation1.14E-03
60GO:0016226: iron-sulfur cluster assembly1.22E-03
61GO:0006730: one-carbon metabolic process1.22E-03
62GO:0006734: NADH metabolic process1.51E-03
63GO:0009902: chloroplast relocation1.51E-03
64GO:0019676: ammonia assimilation cycle1.51E-03
65GO:0045727: positive regulation of translation1.51E-03
66GO:0015994: chlorophyll metabolic process1.51E-03
67GO:0042631: cellular response to water deprivation1.68E-03
68GO:0055114: oxidation-reduction process1.88E-03
69GO:0043097: pyrimidine nucleoside salvage1.93E-03
70GO:0006564: L-serine biosynthetic process1.93E-03
71GO:0009904: chloroplast accumulation movement1.93E-03
72GO:0006097: glyoxylate cycle1.93E-03
73GO:0016123: xanthophyll biosynthetic process1.93E-03
74GO:0016120: carotene biosynthetic process1.93E-03
75GO:0006544: glycine metabolic process1.93E-03
76GO:0006656: phosphatidylcholine biosynthetic process1.93E-03
77GO:0009416: response to light stimulus2.15E-03
78GO:0006508: proteolysis2.37E-03
79GO:0006563: L-serine metabolic process2.38E-03
80GO:0010304: PSII associated light-harvesting complex II catabolic process2.38E-03
81GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.38E-03
82GO:0006206: pyrimidine nucleobase metabolic process2.38E-03
83GO:0046855: inositol phosphate dephosphorylation2.38E-03
84GO:0009903: chloroplast avoidance movement2.86E-03
85GO:0009854: oxidative photosynthetic carbon pathway2.86E-03
86GO:0042026: protein refolding2.86E-03
87GO:0006458: 'de novo' protein folding2.86E-03
88GO:1901259: chloroplast rRNA processing2.86E-03
89GO:0010196: nonphotochemical quenching3.36E-03
90GO:0009645: response to low light intensity stimulus3.36E-03
91GO:0009409: response to cold3.86E-03
92GO:0005978: glycogen biosynthetic process3.90E-03
93GO:0000160: phosphorelay signal transduction system4.40E-03
94GO:0032544: plastid translation4.47E-03
95GO:0017004: cytochrome complex assembly4.47E-03
96GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.47E-03
97GO:0009657: plastid organization4.47E-03
98GO:0000373: Group II intron splicing5.06E-03
99GO:0006098: pentose-phosphate shunt5.06E-03
100GO:0009821: alkaloid biosynthetic process5.06E-03
101GO:0090305: nucleic acid phosphodiester bond hydrolysis5.06E-03
102GO:0010206: photosystem II repair5.06E-03
103GO:0090333: regulation of stomatal closure5.06E-03
104GO:0046686: response to cadmium ion5.08E-03
105GO:0009637: response to blue light5.30E-03
106GO:0006099: tricarboxylic acid cycle5.54E-03
107GO:0005982: starch metabolic process5.68E-03
108GO:0010205: photoinhibition5.68E-03
109GO:0009638: phototropism5.68E-03
110GO:0035999: tetrahydrofolate interconversion5.68E-03
111GO:1900865: chloroplast RNA modification5.68E-03
112GO:0006879: cellular iron ion homeostasis6.98E-03
113GO:0006352: DNA-templated transcription, initiation6.98E-03
114GO:0000272: polysaccharide catabolic process6.98E-03
115GO:0019684: photosynthesis, light reaction6.98E-03
116GO:0006415: translational termination6.98E-03
117GO:0006790: sulfur compound metabolic process7.68E-03
118GO:0010207: photosystem II assembly9.13E-03
119GO:0010020: chloroplast fission9.13E-03
120GO:0090351: seedling development9.90E-03
121GO:0046854: phosphatidylinositol phosphorylation9.90E-03
122GO:0005985: sucrose metabolic process9.90E-03
123GO:0046777: protein autophosphorylation1.04E-02
124GO:0016575: histone deacetylation1.23E-02
125GO:0080092: regulation of pollen tube growth1.40E-02
126GO:0032259: methylation1.49E-02
127GO:0009058: biosynthetic process1.74E-02
128GO:0010118: stomatal movement1.77E-02
129GO:0009741: response to brassinosteroid1.87E-02
130GO:0008360: regulation of cell shape1.87E-02
131GO:0006520: cellular amino acid metabolic process1.87E-02
132GO:0015986: ATP synthesis coupled proton transport1.97E-02
133GO:0007018: microtubule-based movement1.97E-02
134GO:0006814: sodium ion transport1.97E-02
135GO:0009646: response to absence of light1.97E-02
136GO:0008654: phospholipid biosynthetic process2.07E-02
137GO:0009791: post-embryonic development2.07E-02
138GO:0080156: mitochondrial mRNA modification2.17E-02
139GO:0032502: developmental process2.28E-02
140GO:0007264: small GTPase mediated signal transduction2.28E-02
141GO:0016032: viral process2.28E-02
142GO:0010090: trichome morphogenesis2.38E-02
143GO:0030163: protein catabolic process2.38E-02
144GO:0042742: defense response to bacterium2.47E-02
145GO:0000910: cytokinesis2.71E-02
146GO:0010027: thylakoid membrane organization2.82E-02
147GO:0009611: response to wounding3.32E-02
148GO:0009817: defense response to fungus, incompatible interaction3.41E-02
149GO:0010218: response to far red light3.66E-02
150GO:0016051: carbohydrate biosynthetic process4.03E-02
151GO:0080167: response to karrikin4.36E-02
152GO:0006457: protein folding4.44E-02
153GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.51E-02
154GO:0005975: carbohydrate metabolic process4.53E-02
155GO:0010114: response to red light4.83E-02
156GO:0009744: response to sucrose4.83E-02
RankGO TermAdjusted P value
1GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
2GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
3GO:0008465: glycerate dehydrogenase activity0.00E+00
4GO:0051738: xanthophyll binding0.00E+00
5GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
6GO:0016719: carotene 7,8-desaturase activity0.00E+00
7GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0046577: long-chain-alcohol oxidase activity0.00E+00
10GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
11GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
12GO:0051721: protein phosphatase 2A binding0.00E+00
13GO:0042903: tubulin deacetylase activity0.00E+00
14GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
15GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
16GO:0043014: alpha-tubulin binding0.00E+00
17GO:0008974: phosphoribulokinase activity0.00E+00
18GO:0046905: phytoene synthase activity0.00E+00
19GO:0004222: metalloendopeptidase activity7.57E-08
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.89E-07
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.28E-06
22GO:0048038: quinone binding1.12E-05
23GO:0004375: glycine dehydrogenase (decarboxylating) activity1.90E-05
24GO:0031072: heat shock protein binding2.71E-05
25GO:0009011: starch synthase activity3.46E-05
26GO:0004176: ATP-dependent peptidase activity7.61E-05
27GO:0016615: malate dehydrogenase activity8.18E-05
28GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.13E-04
29GO:0030060: L-malate dehydrogenase activity1.13E-04
30GO:0004033: aldo-keto reductase (NADP) activity1.91E-04
31GO:0008746: NAD(P)+ transhydrogenase activity2.20E-04
32GO:0016041: glutamate synthase (ferredoxin) activity2.20E-04
33GO:0003867: 4-aminobutyrate transaminase activity2.20E-04
34GO:0070006: metalloaminopeptidase activity2.20E-04
35GO:0051996: squalene synthase activity2.20E-04
36GO:0008237: metallopeptidase activity3.03E-04
37GO:0051082: unfolded protein binding3.17E-04
38GO:0016168: chlorophyll binding3.80E-04
39GO:0008967: phosphoglycolate phosphatase activity4.90E-04
40GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.90E-04
41GO:0000234: phosphoethanolamine N-methyltransferase activity4.90E-04
42GO:0010291: carotene beta-ring hydroxylase activity4.90E-04
43GO:0047746: chlorophyllase activity4.90E-04
44GO:0010297: heteropolysaccharide binding4.90E-04
45GO:0004326: tetrahydrofolylpolyglutamate synthase activity4.90E-04
46GO:0004617: phosphoglycerate dehydrogenase activity4.90E-04
47GO:0004047: aminomethyltransferase activity4.90E-04
48GO:0052832: inositol monophosphate 3-phosphatase activity4.90E-04
49GO:0033201: alpha-1,4-glucan synthase activity4.90E-04
50GO:0003844: 1,4-alpha-glucan branching enzyme activity4.90E-04
51GO:0008934: inositol monophosphate 1-phosphatase activity4.90E-04
52GO:0052833: inositol monophosphate 4-phosphatase activity4.90E-04
53GO:0004512: inositol-3-phosphate synthase activity4.90E-04
54GO:0008266: poly(U) RNA binding6.76E-04
55GO:0070402: NADPH binding7.98E-04
56GO:0043169: cation binding7.98E-04
57GO:0004373: glycogen (starch) synthase activity7.98E-04
58GO:0003913: DNA photolyase activity7.98E-04
59GO:0032947: protein complex scaffold7.98E-04
60GO:0004148: dihydrolipoyl dehydrogenase activity7.98E-04
61GO:0050307: sucrose-phosphate phosphatase activity7.98E-04
62GO:0031409: pigment binding8.40E-04
63GO:0051536: iron-sulfur cluster binding9.27E-04
64GO:0009882: blue light photoreceptor activity1.14E-03
65GO:0008508: bile acid:sodium symporter activity1.14E-03
66GO:0048487: beta-tubulin binding1.14E-03
67GO:0016149: translation release factor activity, codon specific1.14E-03
68GO:0001053: plastid sigma factor activity1.51E-03
69GO:0016987: sigma factor activity1.51E-03
70GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.51E-03
71GO:0051538: 3 iron, 4 sulfur cluster binding1.93E-03
72GO:0008374: O-acyltransferase activity1.93E-03
73GO:0004372: glycine hydroxymethyltransferase activity1.93E-03
74GO:0080030: methyl indole-3-acetate esterase activity2.38E-03
75GO:0004332: fructose-bisphosphate aldolase activity2.38E-03
76GO:0042578: phosphoric ester hydrolase activity2.38E-03
77GO:0019843: rRNA binding2.78E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.86E-03
79GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.86E-03
80GO:0004849: uridine kinase activity2.86E-03
81GO:0009881: photoreceptor activity3.36E-03
82GO:0003843: 1,3-beta-D-glucan synthase activity4.47E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.47E-03
84GO:0015078: hydrogen ion transmembrane transporter activity4.47E-03
85GO:0003747: translation release factor activity5.06E-03
86GO:0016844: strictosidine synthase activity5.68E-03
87GO:0005381: iron ion transmembrane transporter activity5.68E-03
88GO:0004177: aminopeptidase activity6.98E-03
89GO:0044183: protein binding involved in protein folding6.98E-03
90GO:0047372: acylglycerol lipase activity6.98E-03
91GO:0015386: potassium:proton antiporter activity6.98E-03
92GO:0005089: Rho guanyl-nucleotide exchange factor activity6.98E-03
93GO:0046872: metal ion binding7.35E-03
94GO:0051287: NAD binding8.28E-03
95GO:0004089: carbonate dehydratase activity8.39E-03
96GO:0000155: phosphorelay sensor kinase activity8.39E-03
97GO:0050660: flavin adenine dinucleotide binding8.77E-03
98GO:0016787: hydrolase activity9.46E-03
99GO:0004407: histone deacetylase activity1.15E-02
100GO:0005528: FK506 binding1.15E-02
101GO:0016491: oxidoreductase activity1.19E-02
102GO:0043424: protein histidine kinase binding1.23E-02
103GO:0015079: potassium ion transmembrane transporter activity1.23E-02
104GO:0022891: substrate-specific transmembrane transporter activity1.49E-02
105GO:0003756: protein disulfide isomerase activity1.58E-02
106GO:0050662: coenzyme binding1.97E-02
107GO:0010181: FMN binding1.97E-02
108GO:0005509: calcium ion binding2.19E-02
109GO:0004518: nuclease activity2.28E-02
110GO:0000156: phosphorelay response regulator activity2.38E-02
111GO:0008483: transaminase activity2.60E-02
112GO:0016597: amino acid binding2.71E-02
113GO:0016887: ATPase activity2.73E-02
114GO:0009931: calcium-dependent protein serine/threonine kinase activity3.05E-02
115GO:0004683: calmodulin-dependent protein kinase activity3.17E-02
116GO:0008168: methyltransferase activity3.39E-02
117GO:0016788: hydrolase activity, acting on ester bonds3.59E-02
118GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.78E-02
119GO:0050897: cobalt ion binding3.78E-02
120GO:0004364: glutathione transferase activity4.69E-02
121GO:0003723: RNA binding4.70E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009575: chromoplast stroma0.00E+00
5GO:0009507: chloroplast7.16E-55
6GO:0009535: chloroplast thylakoid membrane4.42E-30
7GO:0009570: chloroplast stroma5.22E-23
8GO:0009941: chloroplast envelope8.56E-23
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.65E-20
10GO:0009534: chloroplast thylakoid2.18E-15
11GO:0009579: thylakoid1.14E-11
12GO:0048046: apoplast1.00E-06
13GO:0009654: photosystem II oxygen evolving complex1.88E-06
14GO:0010287: plastoglobule3.43E-06
15GO:0005960: glycine cleavage complex1.90E-05
16GO:0010319: stromule1.91E-05
17GO:0030095: chloroplast photosystem II3.31E-05
18GO:0009543: chloroplast thylakoid lumen5.43E-05
19GO:0031969: chloroplast membrane5.92E-05
20GO:0009501: amyloplast1.91E-04
21GO:0019898: extrinsic component of membrane1.95E-04
22GO:0009782: photosystem I antenna complex2.20E-04
23GO:0009706: chloroplast inner membrane3.17E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex4.90E-04
25GO:0005759: mitochondrial matrix6.43E-04
26GO:0030076: light-harvesting complex7.56E-04
27GO:0009509: chromoplast7.98E-04
28GO:0009517: PSII associated light-harvesting complex II1.51E-03
29GO:0016020: membrane1.86E-03
30GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.38E-03
31GO:0016021: integral component of membrane4.42E-03
32GO:0009539: photosystem II reaction center4.47E-03
33GO:0000148: 1,3-beta-D-glucan synthase complex4.47E-03
34GO:0005819: spindle5.79E-03
35GO:0016324: apical plasma membrane6.32E-03
36GO:0009508: plastid chromosome8.39E-03
37GO:0009536: plastid1.06E-02
38GO:0042651: thylakoid membrane1.23E-02
39GO:0005871: kinesin complex1.68E-02
40GO:0009524: phragmoplast1.74E-02
41GO:0009522: photosystem I1.97E-02
42GO:0009523: photosystem II2.07E-02
43GO:0009504: cell plate2.07E-02
44GO:0005694: chromosome2.28E-02
45GO:0005778: peroxisomal membrane2.60E-02
46GO:0009295: nucleoid2.60E-02
47GO:0030529: intracellular ribonucleoprotein complex2.82E-02
48GO:0022626: cytosolic ribosome3.06E-02
49GO:0005777: peroxisome3.83E-02
50GO:0031977: thylakoid lumen4.56E-02
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Gene type



Gene DE type