Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G62640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0015805: S-adenosyl-L-methionine transport0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0010394: homogalacturonan metabolic process0.00E+00
11GO:0006642: triglyceride mobilization0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0042493: response to drug0.00E+00
14GO:0042371: vitamin K biosynthetic process0.00E+00
15GO:1905499: trichome papilla formation0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0006412: translation1.80E-13
18GO:0009735: response to cytokinin1.50E-10
19GO:0032544: plastid translation6.25E-10
20GO:0042254: ribosome biogenesis3.38E-08
21GO:0015979: photosynthesis1.43E-07
22GO:0010027: thylakoid membrane organization1.67E-06
23GO:0000413: protein peptidyl-prolyl isomerization9.99E-06
24GO:0090391: granum assembly1.13E-05
25GO:0006633: fatty acid biosynthetic process1.55E-05
26GO:0006183: GTP biosynthetic process4.61E-05
27GO:0009658: chloroplast organization6.32E-05
28GO:0010236: plastoquinone biosynthetic process7.32E-05
29GO:0042372: phylloquinone biosynthetic process1.47E-04
30GO:0009772: photosynthetic electron transport in photosystem II1.93E-04
31GO:0010196: nonphotochemical quenching1.93E-04
32GO:0042335: cuticle development2.00E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway2.60E-04
34GO:0060627: regulation of vesicle-mediated transport2.60E-04
35GO:0043489: RNA stabilization2.60E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process2.60E-04
37GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.60E-04
38GO:1904964: positive regulation of phytol biosynthetic process2.60E-04
39GO:0043686: co-translational protein modification2.60E-04
40GO:0045488: pectin metabolic process2.60E-04
41GO:1902458: positive regulation of stomatal opening2.60E-04
42GO:0009657: plastid organization3.02E-04
43GO:0006096: glycolytic process3.46E-04
44GO:0006457: protein folding3.72E-04
45GO:0042761: very long-chain fatty acid biosynthetic process4.33E-04
46GO:0010275: NAD(P)H dehydrogenase complex assembly5.74E-04
47GO:1902326: positive regulation of chlorophyll biosynthetic process5.74E-04
48GO:0071258: cellular response to gravity5.74E-04
49GO:0006729: tetrahydrobiopterin biosynthetic process5.74E-04
50GO:1903426: regulation of reactive oxygen species biosynthetic process5.74E-04
51GO:0006568: tryptophan metabolic process5.74E-04
52GO:0043085: positive regulation of catalytic activity5.84E-04
53GO:0015995: chlorophyll biosynthetic process5.93E-04
54GO:0010207: photosystem II assembly8.52E-04
55GO:0019253: reductive pentose-phosphate cycle8.52E-04
56GO:0051211: anisotropic cell growth9.31E-04
57GO:0019563: glycerol catabolic process9.31E-04
58GO:0009062: fatty acid catabolic process9.31E-04
59GO:0010581: regulation of starch biosynthetic process9.31E-04
60GO:0010253: UDP-rhamnose biosynthetic process9.31E-04
61GO:0071492: cellular response to UV-A9.31E-04
62GO:0032504: multicellular organism reproduction9.31E-04
63GO:0010025: wax biosynthetic process1.05E-03
64GO:0019344: cysteine biosynthetic process1.17E-03
65GO:0007017: microtubule-based process1.28E-03
66GO:0009102: biotin biosynthetic process1.33E-03
67GO:0051085: chaperone mediated protein folding requiring cofactor1.33E-03
68GO:0051639: actin filament network formation1.33E-03
69GO:0009650: UV protection1.33E-03
70GO:0006241: CTP biosynthetic process1.33E-03
71GO:0006424: glutamyl-tRNA aminoacylation1.33E-03
72GO:1901332: negative regulation of lateral root development1.33E-03
73GO:0006165: nucleoside diphosphate phosphorylation1.33E-03
74GO:0006228: UTP biosynthetic process1.33E-03
75GO:0006986: response to unfolded protein1.33E-03
76GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.33E-03
77GO:2001141: regulation of RNA biosynthetic process1.33E-03
78GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.68E-03
79GO:0009411: response to UV1.68E-03
80GO:0071486: cellular response to high light intensity1.78E-03
81GO:0051764: actin crosslink formation1.78E-03
82GO:0006661: phosphatidylinositol biosynthetic process1.78E-03
83GO:0044206: UMP salvage1.78E-03
84GO:0080022: primary root development2.13E-03
85GO:0006665: sphingolipid metabolic process2.27E-03
86GO:0032543: mitochondrial translation2.27E-03
87GO:0048359: mucilage metabolic process involved in seed coat development2.27E-03
88GO:0045038: protein import into chloroplast thylakoid membrane2.27E-03
89GO:0043097: pyrimidine nucleoside salvage2.27E-03
90GO:0031365: N-terminal protein amino acid modification2.27E-03
91GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.80E-03
92GO:0006655: phosphatidylglycerol biosynthetic process2.80E-03
93GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.80E-03
94GO:0006206: pyrimidine nucleobase metabolic process2.80E-03
95GO:0006014: D-ribose metabolic process2.80E-03
96GO:0042549: photosystem II stabilization2.80E-03
97GO:0009955: adaxial/abaxial pattern specification3.36E-03
98GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.36E-03
99GO:0017148: negative regulation of translation3.36E-03
100GO:1901259: chloroplast rRNA processing3.36E-03
101GO:0030488: tRNA methylation3.36E-03
102GO:0010189: vitamin E biosynthetic process3.36E-03
103GO:0009854: oxidative photosynthetic carbon pathway3.36E-03
104GO:0010019: chloroplast-nucleus signaling pathway3.36E-03
105GO:0010555: response to mannitol3.36E-03
106GO:0009828: plant-type cell wall loosening3.42E-03
107GO:0045454: cell redox homeostasis3.76E-03
108GO:0006400: tRNA modification3.97E-03
109GO:0009790: embryo development4.59E-03
110GO:0048564: photosystem I assembly4.60E-03
111GO:0009642: response to light intensity4.60E-03
112GO:2000070: regulation of response to water deprivation4.60E-03
113GO:0045010: actin nucleation4.60E-03
114GO:0071482: cellular response to light stimulus5.27E-03
115GO:0015996: chlorophyll catabolic process5.27E-03
116GO:0019430: removal of superoxide radicals5.27E-03
117GO:0007186: G-protein coupled receptor signaling pathway5.27E-03
118GO:0006526: arginine biosynthetic process5.27E-03
119GO:0009817: defense response to fungus, incompatible interaction5.32E-03
120GO:0015780: nucleotide-sugar transport5.98E-03
121GO:0008152: metabolic process6.01E-03
122GO:0009631: cold acclimation6.15E-03
123GO:0010380: regulation of chlorophyll biosynthetic process6.71E-03
124GO:0034599: cellular response to oxidative stress7.05E-03
125GO:0010192: mucilage biosynthetic process7.47E-03
126GO:0006535: cysteine biosynthetic process from serine7.47E-03
127GO:0045036: protein targeting to chloroplast7.47E-03
128GO:0009773: photosynthetic electron transport in photosystem I8.27E-03
129GO:0009073: aromatic amino acid family biosynthetic process8.27E-03
130GO:0006352: DNA-templated transcription, initiation8.27E-03
131GO:0018119: peptidyl-cysteine S-nitrosylation8.27E-03
132GO:0045037: protein import into chloroplast stroma9.09E-03
133GO:0006006: glucose metabolic process9.94E-03
134GO:0030036: actin cytoskeleton organization9.94E-03
135GO:0006094: gluconeogenesis9.94E-03
136GO:0042538: hyperosmotic salinity response1.09E-02
137GO:0009664: plant-type cell wall organization1.09E-02
138GO:0042742: defense response to bacterium1.13E-02
139GO:0006833: water transport1.27E-02
140GO:0009116: nucleoside metabolic process1.36E-02
141GO:0000027: ribosomal large subunit assembly1.36E-02
142GO:0051017: actin filament bundle assembly1.36E-02
143GO:0006418: tRNA aminoacylation for protein translation1.46E-02
144GO:0009695: jasmonic acid biosynthetic process1.46E-02
145GO:0031408: oxylipin biosynthetic process1.56E-02
146GO:0030245: cellulose catabolic process1.67E-02
147GO:0055085: transmembrane transport1.77E-02
148GO:0040007: growth1.77E-02
149GO:0006869: lipid transport1.84E-02
150GO:0010091: trichome branching1.88E-02
151GO:0010214: seed coat development1.88E-02
152GO:0009409: response to cold1.90E-02
153GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.99E-02
154GO:0000226: microtubule cytoskeleton organization2.11E-02
155GO:0034220: ion transmembrane transport2.11E-02
156GO:0006520: cellular amino acid metabolic process2.22E-02
157GO:0045489: pectin biosynthetic process2.22E-02
158GO:0006662: glycerol ether metabolic process2.22E-02
159GO:0010182: sugar mediated signaling pathway2.22E-02
160GO:0015986: ATP synthesis coupled proton transport2.34E-02
161GO:0042744: hydrogen peroxide catabolic process2.40E-02
162GO:0019252: starch biosynthetic process2.46E-02
163GO:0008654: phospholipid biosynthetic process2.46E-02
164GO:0000302: response to reactive oxygen species2.58E-02
165GO:0006635: fatty acid beta-oxidation2.58E-02
166GO:0032502: developmental process2.70E-02
167GO:0010090: trichome morphogenesis2.83E-02
168GO:0009567: double fertilization forming a zygote and endosperm2.96E-02
169GO:0016311: dephosphorylation3.91E-02
170GO:0048481: plant ovule development4.05E-02
171GO:0030244: cellulose biosynthetic process4.05E-02
172GO:0018298: protein-chromophore linkage4.05E-02
173GO:0010311: lateral root formation4.20E-02
174GO:0009826: unidimensional cell growth4.31E-02
175GO:0009853: photorespiration4.79E-02
176GO:0045087: innate immune response4.79E-02
177GO:0016051: carbohydrate biosynthetic process4.79E-02
178GO:0009637: response to blue light4.79E-02
RankGO TermAdjusted P value
1GO:0004076: biotin synthase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
5GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
15GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
16GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
17GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
18GO:0019843: rRNA binding2.45E-17
19GO:0003735: structural constituent of ribosome1.68E-13
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.19E-07
21GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity3.13E-06
22GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.13E-05
23GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.55E-05
24GO:0016851: magnesium chelatase activity2.55E-05
25GO:0043023: ribosomal large subunit binding2.55E-05
26GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.60E-04
27GO:0008809: carnitine racemase activity2.60E-04
28GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity2.60E-04
29GO:0004425: indole-3-glycerol-phosphate synthase activity2.60E-04
30GO:0004560: alpha-L-fucosidase activity2.60E-04
31GO:0004807: triose-phosphate isomerase activity2.60E-04
32GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity2.60E-04
33GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity2.60E-04
34GO:0017169: CDP-alcohol phosphatidyltransferase activity2.60E-04
35GO:0004321: fatty-acyl-CoA synthase activity2.60E-04
36GO:0005080: protein kinase C binding2.60E-04
37GO:0042586: peptide deformylase activity2.60E-04
38GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.60E-04
39GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.60E-04
40GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity2.60E-04
41GO:0008047: enzyme activator activity5.06E-04
42GO:0003938: IMP dehydrogenase activity5.74E-04
43GO:0010280: UDP-L-rhamnose synthase activity5.74E-04
44GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.74E-04
45GO:0050377: UDP-glucose 4,6-dehydratase activity5.74E-04
46GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.74E-04
47GO:0008460: dTDP-glucose 4,6-dehydratase activity5.74E-04
48GO:0008266: poly(U) RNA binding8.52E-04
49GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity9.31E-04
50GO:0002161: aminoacyl-tRNA editing activity9.31E-04
51GO:0004148: dihydrolipoyl dehydrogenase activity9.31E-04
52GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity9.31E-04
53GO:0051087: chaperone binding1.28E-03
54GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.33E-03
55GO:0004550: nucleoside diphosphate kinase activity1.33E-03
56GO:0004165: dodecenoyl-CoA delta-isomerase activity1.33E-03
57GO:0008097: 5S rRNA binding1.33E-03
58GO:0022891: substrate-specific transmembrane transporter activity1.68E-03
59GO:0016836: hydro-lyase activity1.78E-03
60GO:0016987: sigma factor activity1.78E-03
61GO:0052793: pectin acetylesterase activity1.78E-03
62GO:0043495: protein anchor1.78E-03
63GO:0004659: prenyltransferase activity1.78E-03
64GO:0001053: plastid sigma factor activity1.78E-03
65GO:0004845: uracil phosphoribosyltransferase activity1.78E-03
66GO:0009922: fatty acid elongase activity2.27E-03
67GO:0004040: amidase activity2.27E-03
68GO:0004791: thioredoxin-disulfide reductase activity2.47E-03
69GO:0016208: AMP binding2.80E-03
70GO:0004130: cytochrome-c peroxidase activity2.80E-03
71GO:0016688: L-ascorbate peroxidase activity2.80E-03
72GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.22E-03
73GO:0052689: carboxylic ester hydrolase activity3.33E-03
74GO:0004124: cysteine synthase activity3.36E-03
75GO:0051920: peroxiredoxin activity3.36E-03
76GO:0004849: uridine kinase activity3.36E-03
77GO:0102391: decanoate--CoA ligase activity3.36E-03
78GO:0004747: ribokinase activity3.36E-03
79GO:0005200: structural constituent of cytoskeleton3.64E-03
80GO:0019899: enzyme binding3.97E-03
81GO:0004467: long-chain fatty acid-CoA ligase activity3.97E-03
82GO:0016168: chlorophyll binding4.32E-03
83GO:0052747: sinapyl alcohol dehydrogenase activity4.60E-03
84GO:0004033: aldo-keto reductase (NADP) activity4.60E-03
85GO:0008865: fructokinase activity4.60E-03
86GO:0016209: antioxidant activity4.60E-03
87GO:0016740: transferase activity4.67E-03
88GO:0003924: GTPase activity5.18E-03
89GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors5.98E-03
90GO:0016207: 4-coumarate-CoA ligase activity5.98E-03
91GO:0047617: acyl-CoA hydrolase activity6.71E-03
92GO:0051539: 4 iron, 4 sulfur cluster binding7.69E-03
93GO:0005525: GTP binding7.87E-03
94GO:0008378: galactosyltransferase activity9.09E-03
95GO:0000049: tRNA binding9.09E-03
96GO:0045551: cinnamyl-alcohol dehydrogenase activity9.09E-03
97GO:0004565: beta-galactosidase activity9.94E-03
98GO:0016788: hydrolase activity, acting on ester bonds1.02E-02
99GO:0051287: NAD binding1.06E-02
100GO:0005528: FK506 binding1.36E-02
101GO:0051536: iron-sulfur cluster binding1.36E-02
102GO:0043424: protein histidine kinase binding1.46E-02
103GO:0004176: ATP-dependent peptidase activity1.56E-02
104GO:0030570: pectate lyase activity1.77E-02
105GO:0008810: cellulase activity1.77E-02
106GO:0008514: organic anion transmembrane transporter activity1.88E-02
107GO:0047134: protein-disulfide reductase activity1.99E-02
108GO:0004812: aminoacyl-tRNA ligase activity1.99E-02
109GO:0005507: copper ion binding2.10E-02
110GO:0008080: N-acetyltransferase activity2.22E-02
111GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.22E-02
112GO:0051015: actin filament binding2.83E-02
113GO:0008237: metallopeptidase activity3.09E-02
114GO:0005509: calcium ion binding3.13E-02
115GO:0008289: lipid binding3.23E-02
116GO:0015250: water channel activity3.35E-02
117GO:0016887: ATPase activity3.68E-02
118GO:0042802: identical protein binding3.69E-02
119GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.91E-02
120GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.05E-02
121GO:0008168: methyltransferase activity4.31E-02
122GO:0030145: manganese ion binding4.49E-02
123GO:0003746: translation elongation factor activity4.79E-02
124GO:0003993: acid phosphatase activity4.94E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009570: chloroplast stroma7.58E-60
5GO:0009507: chloroplast1.47E-57
6GO:0009941: chloroplast envelope2.77E-42
7GO:0009579: thylakoid2.73E-31
8GO:0009535: chloroplast thylakoid membrane4.71E-22
9GO:0031977: thylakoid lumen4.71E-15
10GO:0005840: ribosome7.23E-15
11GO:0009534: chloroplast thylakoid1.60E-14
12GO:0009543: chloroplast thylakoid lumen3.74E-11
13GO:0009654: photosystem II oxygen evolving complex6.12E-08
14GO:0010007: magnesium chelatase complex1.13E-05
15GO:0019898: extrinsic component of membrane1.59E-05
16GO:0009536: plastid2.39E-05
17GO:0000311: plastid large ribosomal subunit3.21E-05
18GO:0016020: membrane1.57E-04
19GO:0009923: fatty acid elongase complex2.60E-04
20GO:0009547: plastid ribosome2.60E-04
21GO:0045298: tubulin complex3.65E-04
22GO:0010319: stromule4.15E-04
23GO:0022626: cytosolic ribosome7.82E-04
24GO:0030095: chloroplast photosystem II8.52E-04
25GO:0000312: plastid small ribosomal subunit8.52E-04
26GO:0009528: plastid inner membrane9.31E-04
27GO:0009509: chromoplast9.31E-04
28GO:0032432: actin filament bundle1.33E-03
29GO:0009527: plastid outer membrane1.78E-03
30GO:0009523: photosystem II2.64E-03
31GO:0031209: SCAR complex2.80E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.80E-03
33GO:0031969: chloroplast membrane2.86E-03
34GO:0009533: chloroplast stromal thylakoid3.97E-03
35GO:0009539: photosystem II reaction center5.27E-03
36GO:0009707: chloroplast outer membrane5.32E-03
37GO:0005763: mitochondrial small ribosomal subunit5.98E-03
38GO:0048046: apoplast6.30E-03
39GO:0005802: trans-Golgi network7.52E-03
40GO:0005618: cell wall7.70E-03
41GO:0005884: actin filament8.27E-03
42GO:0005768: endosome9.40E-03
43GO:0042651: thylakoid membrane1.46E-02
44GO:0005777: peroxisome1.52E-02
45GO:0015935: small ribosomal subunit1.56E-02
46GO:0009532: plastid stroma1.56E-02
47GO:0005759: mitochondrial matrix2.64E-02
48GO:0005778: peroxisomal membrane3.09E-02
49GO:0030529: intracellular ribonucleoprotein complex3.35E-02
50GO:0022627: cytosolic small ribosomal subunit3.84E-02
51GO:0046658: anchored component of plasma membrane3.84E-02
52GO:0015934: large ribosomal subunit4.49E-02
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Gene type



Gene DE type