Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G61640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080056: petal vascular tissue pattern formation0.00E+00
2GO:0043201: response to leucine0.00E+00
3GO:0080053: response to phenylalanine0.00E+00
4GO:0006983: ER overload response0.00E+00
5GO:0080057: sepal vascular tissue pattern formation0.00E+00
6GO:0080052: response to histidine0.00E+00
7GO:0043687: post-translational protein modification0.00E+00
8GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
9GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
10GO:0051553: flavone biosynthetic process0.00E+00
11GO:0006182: cGMP biosynthetic process0.00E+00
12GO:0034975: protein folding in endoplasmic reticulum0.00E+00
13GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
14GO:0042742: defense response to bacterium2.37E-06
15GO:0018279: protein N-linked glycosylation via asparagine3.01E-06
16GO:0006952: defense response5.60E-06
17GO:0006499: N-terminal protein myristoylation3.49E-05
18GO:0006468: protein phosphorylation4.48E-05
19GO:0002239: response to oomycetes6.96E-05
20GO:0000162: tryptophan biosynthetic process2.33E-04
21GO:0009620: response to fungus2.70E-04
22GO:0009751: response to salicylic acid3.81E-04
23GO:0043547: positive regulation of GTPase activity4.62E-04
24GO:0006422: aspartyl-tRNA aminoacylation4.62E-04
25GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.62E-04
26GO:0002143: tRNA wobble position uridine thiolation4.62E-04
27GO:0010230: alternative respiration4.62E-04
28GO:0006643: membrane lipid metabolic process4.62E-04
29GO:0042759: long-chain fatty acid biosynthetic process4.62E-04
30GO:0046244: salicylic acid catabolic process4.62E-04
31GO:0009968: negative regulation of signal transduction4.62E-04
32GO:0010266: response to vitamin B14.62E-04
33GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine4.62E-04
34GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.71E-04
35GO:0009749: response to glucose8.03E-04
36GO:0010150: leaf senescence8.67E-04
37GO:0051645: Golgi localization9.96E-04
38GO:0006212: uracil catabolic process9.96E-04
39GO:0043066: negative regulation of apoptotic process9.96E-04
40GO:0019483: beta-alanine biosynthetic process9.96E-04
41GO:0042939: tripeptide transport9.96E-04
42GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine9.96E-04
43GO:0060151: peroxisome localization9.96E-04
44GO:0031349: positive regulation of defense response9.96E-04
45GO:0030003: cellular cation homeostasis9.96E-04
46GO:0006996: organelle organization9.96E-04
47GO:0080183: response to photooxidative stress9.96E-04
48GO:0006032: chitin catabolic process1.14E-03
49GO:0043069: negative regulation of programmed cell death1.14E-03
50GO:0009617: response to bacterium1.18E-03
51GO:0009682: induced systemic resistance1.32E-03
52GO:0052544: defense response by callose deposition in cell wall1.32E-03
53GO:0009627: systemic acquired resistance1.60E-03
54GO:1900055: regulation of leaf senescence1.62E-03
55GO:0009062: fatty acid catabolic process1.62E-03
56GO:0010498: proteasomal protein catabolic process1.62E-03
57GO:0090436: leaf pavement cell development1.62E-03
58GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.62E-03
59GO:0051646: mitochondrion localization1.62E-03
60GO:0015783: GDP-fucose transport1.62E-03
61GO:0070588: calcium ion transmembrane transport2.17E-03
62GO:0072334: UDP-galactose transmembrane transport2.35E-03
63GO:0009399: nitrogen fixation2.35E-03
64GO:0046513: ceramide biosynthetic process2.35E-03
65GO:0000187: activation of MAPK activity2.35E-03
66GO:0010116: positive regulation of abscisic acid biosynthetic process2.35E-03
67GO:0019438: aromatic compound biosynthetic process2.35E-03
68GO:0080147: root hair cell development2.68E-03
69GO:2000377: regulation of reactive oxygen species metabolic process2.68E-03
70GO:0006874: cellular calcium ion homeostasis2.96E-03
71GO:0016192: vesicle-mediated transport2.98E-03
72GO:0048830: adventitious root development3.16E-03
73GO:2000038: regulation of stomatal complex development3.16E-03
74GO:0042938: dipeptide transport3.16E-03
75GO:0006542: glutamine biosynthetic process3.16E-03
76GO:0016998: cell wall macromolecule catabolic process3.25E-03
77GO:0030433: ubiquitin-dependent ERAD pathway3.56E-03
78GO:0071456: cellular response to hypoxia3.56E-03
79GO:0030041: actin filament polymerization4.05E-03
80GO:0006461: protein complex assembly4.05E-03
81GO:0009306: protein secretion4.23E-03
82GO:0047484: regulation of response to osmotic stress5.02E-03
83GO:1900425: negative regulation of defense response to bacterium5.02E-03
84GO:0002238: response to molecule of fungal origin5.02E-03
85GO:0006014: D-ribose metabolic process5.02E-03
86GO:0009759: indole glucosinolate biosynthetic process5.02E-03
87GO:0032259: methylation5.02E-03
88GO:0006777: Mo-molybdopterin cofactor biosynthetic process5.02E-03
89GO:0007165: signal transduction5.13E-03
90GO:0050832: defense response to fungus5.24E-03
91GO:0009737: response to abscisic acid5.43E-03
92GO:0006508: proteolysis5.74E-03
93GO:0048544: recognition of pollen5.75E-03
94GO:0000911: cytokinesis by cell plate formation6.06E-03
95GO:0009612: response to mechanical stimulus6.06E-03
96GO:0010555: response to mannitol6.06E-03
97GO:2000037: regulation of stomatal complex patterning6.06E-03
98GO:2000067: regulation of root morphogenesis6.06E-03
99GO:0009851: auxin biosynthetic process6.17E-03
100GO:0002229: defense response to oomycetes6.61E-03
101GO:0071446: cellular response to salicylic acid stimulus7.16E-03
102GO:0000338: protein deneddylation7.16E-03
103GO:1900057: positive regulation of leaf senescence7.16E-03
104GO:1902074: response to salt7.16E-03
105GO:0010044: response to aluminum ion7.16E-03
106GO:0046470: phosphatidylcholine metabolic process7.16E-03
107GO:0030163: protein catabolic process7.53E-03
108GO:0006464: cellular protein modification process8.02E-03
109GO:0009787: regulation of abscisic acid-activated signaling pathway8.33E-03
110GO:0009819: drought recovery8.33E-03
111GO:0009850: auxin metabolic process8.33E-03
112GO:1900150: regulation of defense response to fungus8.33E-03
113GO:0006102: isocitrate metabolic process8.33E-03
114GO:0006367: transcription initiation from RNA polymerase II promoter9.57E-03
115GO:0007186: G-protein coupled receptor signaling pathway9.57E-03
116GO:0043562: cellular response to nitrogen levels9.57E-03
117GO:0009808: lignin metabolic process9.57E-03
118GO:0006972: hyperosmotic response9.57E-03
119GO:2000031: regulation of salicylic acid mediated signaling pathway9.57E-03
120GO:0009607: response to biotic stimulus1.01E-02
121GO:0007338: single fertilization1.09E-02
122GO:0009821: alkaloid biosynthetic process1.09E-02
123GO:0051865: protein autoubiquitination1.09E-02
124GO:0015780: nucleotide-sugar transport1.09E-02
125GO:0008202: steroid metabolic process1.22E-02
126GO:0009817: defense response to fungus, incompatible interaction1.25E-02
127GO:0008219: cell death1.25E-02
128GO:0009813: flavonoid biosynthetic process1.32E-02
129GO:0009688: abscisic acid biosynthetic process1.37E-02
130GO:0009641: shade avoidance1.37E-02
131GO:0000038: very long-chain fatty acid metabolic process1.51E-02
132GO:0006816: calcium ion transport1.51E-02
133GO:0019684: photosynthesis, light reaction1.51E-02
134GO:0009750: response to fructose1.51E-02
135GO:0030148: sphingolipid biosynthetic process1.51E-02
136GO:0009684: indoleacetic acid biosynthetic process1.51E-02
137GO:0012501: programmed cell death1.67E-02
138GO:0071365: cellular response to auxin stimulus1.67E-02
139GO:0000266: mitochondrial fission1.67E-02
140GO:0006099: tricarboxylic acid cycle1.67E-02
141GO:0010588: cotyledon vascular tissue pattern formation1.82E-02
142GO:0030048: actin filament-based movement1.82E-02
143GO:0006626: protein targeting to mitochondrion1.82E-02
144GO:0006807: nitrogen compound metabolic process1.82E-02
145GO:0010229: inflorescence development1.82E-02
146GO:0055046: microgametogenesis1.82E-02
147GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.95E-02
148GO:0048467: gynoecium development1.99E-02
149GO:0010143: cutin biosynthetic process1.99E-02
150GO:0002237: response to molecule of bacterial origin1.99E-02
151GO:0007166: cell surface receptor signaling pathway2.00E-02
152GO:0009744: response to sucrose2.06E-02
153GO:0051707: response to other organism2.06E-02
154GO:0009753: response to jasmonic acid2.10E-02
155GO:0000209: protein polyubiquitination2.14E-02
156GO:0042343: indole glucosinolate metabolic process2.16E-02
157GO:0007030: Golgi organization2.16E-02
158GO:0009969: xyloglucan biosynthetic process2.16E-02
159GO:0008643: carbohydrate transport2.23E-02
160GO:0010025: wax biosynthetic process2.33E-02
161GO:0031347: regulation of defense response2.50E-02
162GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.50E-02
163GO:0009863: salicylic acid mediated signaling pathway2.51E-02
164GO:0006487: protein N-linked glycosylation2.51E-02
165GO:0042538: hyperosmotic salinity response2.59E-02
166GO:0009846: pollen germination2.59E-02
167GO:0009809: lignin biosynthetic process2.78E-02
168GO:0098542: defense response to other organism2.88E-02
169GO:0009814: defense response, incompatible interaction3.07E-02
170GO:0019748: secondary metabolic process3.07E-02
171GO:0055114: oxidation-reduction process3.23E-02
172GO:0010227: floral organ abscission3.27E-02
173GO:0006012: galactose metabolic process3.27E-02
174GO:0006096: glycolytic process3.29E-02
175GO:0010584: pollen exine formation3.47E-02
176GO:0045492: xylan biosynthetic process3.47E-02
177GO:0042127: regulation of cell proliferation3.47E-02
178GO:0009561: megagametogenesis3.47E-02
179GO:0042147: retrograde transport, endosome to Golgi3.67E-02
180GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.98E-02
181GO:0010305: leaf vascular tissue pattern formation4.09E-02
182GO:0010182: sugar mediated signaling pathway4.09E-02
183GO:0044550: secondary metabolite biosynthetic process4.23E-02
184GO:0061025: membrane fusion4.31E-02
185GO:0009646: response to absence of light4.31E-02
186GO:0010183: pollen tube guidance4.53E-02
187GO:0019252: starch biosynthetic process4.53E-02
188GO:0009414: response to water deprivation4.60E-02
189GO:0000302: response to reactive oxygen species4.75E-02
190GO:0006635: fatty acid beta-oxidation4.75E-02
191GO:0006886: intracellular protein transport4.94E-02
192GO:0007264: small GTPase mediated signal transduction4.98E-02
193GO:0016032: viral process4.98E-02
194GO:0009630: gravitropism4.98E-02
RankGO TermAdjusted P value
1GO:0003837: beta-ureidopropionase activity0.00E+00
2GO:0004164: diphthine synthase activity0.00E+00
3GO:0070577: lysine-acetylated histone binding0.00E+00
4GO:0050220: prostaglandin-E synthase activity0.00E+00
5GO:0008843: endochitinase activity0.00E+00
6GO:0061605: molybdopterin-synthase adenylyltransferase activity0.00E+00
7GO:0035885: exochitinase activity0.00E+00
8GO:0016504: peptidase activator activity0.00E+00
9GO:0033759: flavone synthase activity0.00E+00
10GO:0061604: molybdopterin-synthase sulfurtransferase activity0.00E+00
11GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.78E-08
12GO:0004674: protein serine/threonine kinase activity5.60E-07
13GO:0004576: oligosaccharyl transferase activity1.35E-06
14GO:0016301: kinase activity3.19E-06
15GO:0005524: ATP binding1.84E-04
16GO:0004040: amidase activity1.87E-04
17GO:0004190: aspartic-type endopeptidase activity2.00E-04
18GO:0015035: protein disulfide oxidoreductase activity3.40E-04
19GO:0004656: procollagen-proline 4-dioxygenase activity3.55E-04
20GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.64E-04
21GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.21E-04
22GO:0004425: indole-3-glycerol-phosphate synthase activity4.62E-04
23GO:0033984: indole-3-glycerol-phosphate lyase activity4.62E-04
24GO:0015085: calcium ion transmembrane transporter activity4.62E-04
25GO:0004815: aspartate-tRNA ligase activity4.62E-04
26GO:0019707: protein-cysteine S-acyltransferase activity4.62E-04
27GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity4.62E-04
28GO:0031957: very long-chain fatty acid-CoA ligase activity4.62E-04
29GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.62E-04
30GO:0008809: carnitine racemase activity4.62E-04
31GO:0004743: pyruvate kinase activity9.81E-04
32GO:0030955: potassium ion binding9.81E-04
33GO:0045140: inositol phosphoceramide synthase activity9.96E-04
34GO:0032934: sterol binding9.96E-04
35GO:0042937: tripeptide transporter activity9.96E-04
36GO:0030742: GTP-dependent protein binding9.96E-04
37GO:0004566: beta-glucuronidase activity9.96E-04
38GO:0050291: sphingosine N-acyltransferase activity9.96E-04
39GO:0008171: O-methyltransferase activity1.14E-03
40GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.62E-03
41GO:0031683: G-protein beta/gamma-subunit complex binding1.62E-03
42GO:0004383: guanylate cyclase activity1.62E-03
43GO:0016805: dipeptidase activity1.62E-03
44GO:0005457: GDP-fucose transmembrane transporter activity1.62E-03
45GO:0001664: G-protein coupled receptor binding1.62E-03
46GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.62E-03
47GO:0005388: calcium-transporting ATPase activity1.71E-03
48GO:0009055: electron carrier activity1.71E-03
49GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.83E-03
50GO:0004970: ionotropic glutamate receptor activity2.17E-03
51GO:0005217: intracellular ligand-gated ion channel activity2.17E-03
52GO:0004792: thiosulfate sulfurtransferase activity2.35E-03
53GO:0010178: IAA-amino acid conjugate hydrolase activity2.35E-03
54GO:0004449: isocitrate dehydrogenase (NAD+) activity2.35E-03
55GO:0004165: dodecenoyl-CoA delta-isomerase activity2.35E-03
56GO:0031418: L-ascorbic acid binding2.68E-03
57GO:0015369: calcium:proton antiporter activity3.16E-03
58GO:0070628: proteasome binding3.16E-03
59GO:0004031: aldehyde oxidase activity3.16E-03
60GO:0050302: indole-3-acetaldehyde oxidase activity3.16E-03
61GO:0004930: G-protein coupled receptor activity3.16E-03
62GO:0015368: calcium:cation antiporter activity3.16E-03
63GO:0004834: tryptophan synthase activity3.16E-03
64GO:0042936: dipeptide transporter activity3.16E-03
65GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.16E-03
66GO:0005459: UDP-galactose transmembrane transporter activity4.05E-03
67GO:0008641: small protein activating enzyme activity4.05E-03
68GO:0005452: inorganic anion exchanger activity4.05E-03
69GO:0005546: phosphatidylinositol-4,5-bisphosphate binding4.05E-03
70GO:0005496: steroid binding4.05E-03
71GO:0017137: Rab GTPase binding4.05E-03
72GO:0004356: glutamate-ammonia ligase activity4.05E-03
73GO:0045431: flavonol synthase activity4.05E-03
74GO:0015301: anion:anion antiporter activity4.05E-03
75GO:0003756: protein disulfide isomerase activity4.23E-03
76GO:0004866: endopeptidase inhibitor activity5.02E-03
77GO:0102391: decanoate--CoA ligase activity6.06E-03
78GO:0004012: phospholipid-translocating ATPase activity6.06E-03
79GO:0004747: ribokinase activity6.06E-03
80GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.06E-03
81GO:0005261: cation channel activity6.06E-03
82GO:0005506: iron ion binding6.37E-03
83GO:0008235: metalloexopeptidase activity7.16E-03
84GO:0008320: protein transmembrane transporter activity7.16E-03
85GO:0004467: long-chain fatty acid-CoA ligase activity7.16E-03
86GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.53E-03
87GO:0004034: aldose 1-epimerase activity8.33E-03
88GO:0052747: sinapyl alcohol dehydrogenase activity8.33E-03
89GO:0015491: cation:cation antiporter activity8.33E-03
90GO:0004708: MAP kinase kinase activity8.33E-03
91GO:0008865: fructokinase activity8.33E-03
92GO:0050660: flavin adenine dinucleotide binding9.46E-03
93GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.57E-03
94GO:0008142: oxysterol binding9.57E-03
95GO:0004630: phospholipase D activity9.57E-03
96GO:0005516: calmodulin binding1.03E-02
97GO:0030247: polysaccharide binding1.13E-02
98GO:0016844: strictosidine synthase activity1.22E-02
99GO:0004713: protein tyrosine kinase activity1.37E-02
100GO:0004568: chitinase activity1.37E-02
101GO:0030145: manganese ion binding1.45E-02
102GO:0004177: aminopeptidase activity1.51E-02
103GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.55E-02
104GO:0005509: calcium ion binding1.57E-02
105GO:0045551: cinnamyl-alcohol dehydrogenase activity1.67E-02
106GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.82E-02
107GO:0005262: calcium channel activity1.82E-02
108GO:0003774: motor activity1.99E-02
109GO:0008061: chitin binding2.16E-02
110GO:0051537: 2 iron, 2 sulfur cluster binding2.23E-02
111GO:0003954: NADH dehydrogenase activity2.51E-02
112GO:0008168: methyltransferase activity2.79E-02
113GO:0000287: magnesium ion binding2.86E-02
114GO:0004707: MAP kinase activity2.88E-02
115GO:0019706: protein-cysteine S-palmitoyltransferase activity2.88E-02
116GO:0043531: ADP binding3.28E-02
117GO:0045735: nutrient reservoir activity3.29E-02
118GO:0004842: ubiquitin-protein transferase activity3.35E-02
119GO:0008514: organic anion transmembrane transporter activity3.47E-02
120GO:0046872: metal ion binding3.59E-02
121GO:0003779: actin binding3.83E-02
122GO:0061630: ubiquitin protein ligase activity4.06E-02
123GO:0008536: Ran GTPase binding4.09E-02
124GO:0001085: RNA polymerase II transcription factor binding4.09E-02
125GO:0010181: FMN binding4.31E-02
126GO:0016853: isomerase activity4.31E-02
RankGO TermAdjusted P value
1GO:0005674: transcription factor TFIIF complex0.00E+00
2GO:0005783: endoplasmic reticulum6.96E-13
3GO:0016021: integral component of membrane1.02E-11
4GO:0005886: plasma membrane1.04E-10
5GO:0008250: oligosaccharyltransferase complex1.78E-08
6GO:0005789: endoplasmic reticulum membrane1.17E-07
7GO:0005794: Golgi apparatus1.67E-05
8GO:0030173: integral component of Golgi membrane3.55E-04
9GO:0045252: oxoglutarate dehydrogenase complex4.62E-04
10GO:0005911: cell-cell junction4.62E-04
11GO:0000138: Golgi trans cisterna4.62E-04
12GO:0031304: intrinsic component of mitochondrial inner membrane9.96E-04
13GO:0030134: ER to Golgi transport vesicle9.96E-04
14GO:0005765: lysosomal membrane1.32E-03
15GO:0070062: extracellular exosome2.35E-03
16GO:0005576: extracellular region2.69E-03
17GO:0030660: Golgi-associated vesicle membrane3.16E-03
18GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane3.16E-03
19GO:0005802: trans-Golgi network3.97E-03
20GO:0016020: membrane4.31E-03
21GO:0030904: retromer complex5.02E-03
22GO:0005829: cytosol6.92E-03
23GO:0005774: vacuolar membrane7.92E-03
24GO:0032580: Golgi cisterna membrane8.02E-03
25GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane8.33E-03
26GO:0030131: clathrin adaptor complex8.33E-03
27GO:0009505: plant-type cell wall1.07E-02
28GO:0008180: COP9 signalosome1.09E-02
29GO:0031901: early endosome membrane1.09E-02
30GO:0030125: clathrin vesicle coat1.37E-02
31GO:0016459: myosin complex1.37E-02
32GO:0031902: late endosome membrane1.90E-02
33GO:0030176: integral component of endoplasmic reticulum membrane2.16E-02
34GO:0005769: early endosome2.33E-02
35GO:0005618: cell wall2.50E-02
36GO:0005839: proteasome core complex2.88E-02
37GO:0005905: clathrin-coated pit2.88E-02
38GO:0005768: endosome4.03E-02
39GO:0009504: cell plate4.53E-02
40GO:0019898: extrinsic component of membrane4.53E-02
41GO:0009543: chloroplast thylakoid lumen4.93E-02
42GO:0000145: exocyst4.98E-02
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Gene type



Gene DE type