Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G61560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
2GO:0006497: protein lipidation0.00E+00
3GO:0006182: cGMP biosynthetic process0.00E+00
4GO:0006592: ornithine biosynthetic process0.00E+00
5GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
6GO:0010055: atrichoblast differentiation0.00E+00
7GO:0046109: uridine biosynthetic process0.00E+00
8GO:0080053: response to phenylalanine0.00E+00
9GO:0043201: response to leucine0.00E+00
10GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
11GO:0006793: phosphorus metabolic process0.00E+00
12GO:0051238: sequestering of metal ion0.00E+00
13GO:0080052: response to histidine0.00E+00
14GO:0046865: terpenoid transport0.00E+00
15GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
16GO:0042742: defense response to bacterium2.85E-09
17GO:0009617: response to bacterium7.06E-08
18GO:0006874: cellular calcium ion homeostasis1.19E-07
19GO:0006468: protein phosphorylation1.42E-07
20GO:0071456: cellular response to hypoxia6.11E-06
21GO:0002238: response to molecule of fungal origin1.83E-05
22GO:0009620: response to fungus2.70E-05
23GO:0010150: leaf senescence2.71E-05
24GO:0002237: response to molecule of bacterial origin3.02E-05
25GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.04E-05
26GO:0010120: camalexin biosynthetic process9.35E-05
27GO:0050832: defense response to fungus1.01E-04
28GO:0006952: defense response1.30E-04
29GO:0010200: response to chitin2.21E-04
30GO:0006536: glutamate metabolic process2.53E-04
31GO:0009751: response to salicylic acid5.37E-04
32GO:0042759: long-chain fatty acid biosynthetic process7.25E-04
33GO:0032107: regulation of response to nutrient levels7.25E-04
34GO:0046167: glycerol-3-phosphate biosynthetic process7.25E-04
35GO:0051938: L-glutamate import7.25E-04
36GO:0099132: ATP hydrolysis coupled cation transmembrane transport7.25E-04
37GO:0010941: regulation of cell death7.25E-04
38GO:0010726: positive regulation of hydrogen peroxide metabolic process7.25E-04
39GO:0010421: hydrogen peroxide-mediated programmed cell death7.25E-04
40GO:1901183: positive regulation of camalexin biosynthetic process7.25E-04
41GO:0032491: detection of molecule of fungal origin7.25E-04
42GO:0007165: signal transduction1.06E-03
43GO:0007186: G-protein coupled receptor signaling pathway1.34E-03
44GO:0010204: defense response signaling pathway, resistance gene-independent1.34E-03
45GO:0019441: tryptophan catabolic process to kynurenine1.56E-03
46GO:0043091: L-arginine import1.56E-03
47GO:0051592: response to calcium ion1.56E-03
48GO:0080183: response to photooxidative stress1.56E-03
49GO:0015802: basic amino acid transport1.56E-03
50GO:0009805: coumarin biosynthetic process1.56E-03
51GO:0006641: triglyceride metabolic process1.56E-03
52GO:0009866: induced systemic resistance, ethylene mediated signaling pathway1.56E-03
53GO:0043066: negative regulation of apoptotic process1.56E-03
54GO:0006212: uracil catabolic process1.56E-03
55GO:0019483: beta-alanine biosynthetic process1.56E-03
56GO:0015865: purine nucleotide transport1.56E-03
57GO:0042939: tripeptide transport1.56E-03
58GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.56E-03
59GO:0002240: response to molecule of oomycetes origin1.56E-03
60GO:0006423: cysteinyl-tRNA aminoacylation1.56E-03
61GO:0042325: regulation of phosphorylation1.56E-03
62GO:0030003: cellular cation homeostasis1.56E-03
63GO:0032259: methylation1.66E-03
64GO:0009636: response to toxic substance2.12E-03
65GO:0043069: negative regulation of programmed cell death2.24E-03
66GO:0006032: chitin catabolic process2.24E-03
67GO:0010351: lithium ion transport2.58E-03
68GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway2.58E-03
69GO:0015692: lead ion transport2.58E-03
70GO:0080168: abscisic acid transport2.58E-03
71GO:1900055: regulation of leaf senescence2.58E-03
72GO:0019563: glycerol catabolic process2.58E-03
73GO:0034051: negative regulation of plant-type hypersensitive response2.58E-03
74GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway2.58E-03
75GO:0006556: S-adenosylmethionine biosynthetic process2.58E-03
76GO:0009682: induced systemic resistance2.59E-03
77GO:0006790: sulfur compound metabolic process2.97E-03
78GO:0012501: programmed cell death2.97E-03
79GO:0006882: cellular zinc ion homeostasis3.76E-03
80GO:0046513: ceramide biosynthetic process3.76E-03
81GO:0010116: positive regulation of abscisic acid biosynthetic process3.76E-03
82GO:0019438: aromatic compound biosynthetic process3.76E-03
83GO:0033169: histone H3-K9 demethylation3.76E-03
84GO:0070301: cellular response to hydrogen peroxide3.76E-03
85GO:0009052: pentose-phosphate shunt, non-oxidative branch3.76E-03
86GO:0046902: regulation of mitochondrial membrane permeability3.76E-03
87GO:0006072: glycerol-3-phosphate metabolic process3.76E-03
88GO:0009399: nitrogen fixation3.76E-03
89GO:0070588: calcium ion transmembrane transport4.29E-03
90GO:0046854: phosphatidylinositol phosphorylation4.29E-03
91GO:0009817: defense response to fungus, incompatible interaction4.69E-03
92GO:0000162: tryptophan biosynthetic process4.79E-03
93GO:0042938: dipeptide transport5.08E-03
94GO:0006542: glutamine biosynthetic process5.08E-03
95GO:0045227: capsule polysaccharide biosynthetic process5.08E-03
96GO:0046345: abscisic acid catabolic process5.08E-03
97GO:1901002: positive regulation of response to salt stress5.08E-03
98GO:0033358: UDP-L-arabinose biosynthetic process5.08E-03
99GO:0010188: response to microbial phytotoxin5.08E-03
100GO:0080142: regulation of salicylic acid biosynthetic process5.08E-03
101GO:0009407: toxin catabolic process5.32E-03
102GO:0080147: root hair cell development5.32E-03
103GO:0016998: cell wall macromolecule catabolic process6.47E-03
104GO:0003333: amino acid transmembrane transport6.47E-03
105GO:0007029: endoplasmic reticulum organization6.54E-03
106GO:0000304: response to singlet oxygen6.54E-03
107GO:0009697: salicylic acid biosynthetic process6.54E-03
108GO:0030308: negative regulation of cell growth6.54E-03
109GO:0030041: actin filament polymerization6.54E-03
110GO:0006012: galactose metabolic process7.75E-03
111GO:0006631: fatty acid metabolic process7.94E-03
112GO:0006561: proline biosynthetic process8.12E-03
113GO:0010942: positive regulation of cell death8.12E-03
114GO:0015691: cadmium ion transport8.12E-03
115GO:0010256: endomembrane system organization8.12E-03
116GO:0006555: methionine metabolic process8.12E-03
117GO:1900425: negative regulation of defense response to bacterium8.12E-03
118GO:0042542: response to hydrogen peroxide8.37E-03
119GO:0051707: response to other organism8.81E-03
120GO:0080167: response to karrikin9.18E-03
121GO:0055114: oxidation-reduction process9.29E-03
122GO:0010555: response to mannitol9.83E-03
123GO:2000067: regulation of root morphogenesis9.83E-03
124GO:0071470: cellular response to osmotic stress9.83E-03
125GO:0019509: L-methionine salvage from methylthioadenosine9.83E-03
126GO:0045926: negative regulation of growth9.83E-03
127GO:0042631: cellular response to water deprivation9.92E-03
128GO:0006855: drug transmembrane transport1.07E-02
129GO:1902074: response to salt1.17E-02
130GO:1900056: negative regulation of leaf senescence1.17E-02
131GO:0030026: cellular manganese ion homeostasis1.17E-02
132GO:1900057: positive regulation of leaf senescence1.17E-02
133GO:0000122: negative regulation of transcription from RNA polymerase II promoter1.17E-02
134GO:0019745: pentacyclic triterpenoid biosynthetic process1.17E-02
135GO:0050829: defense response to Gram-negative bacterium1.17E-02
136GO:0042538: hyperosmotic salinity response1.18E-02
137GO:0006812: cation transport1.18E-02
138GO:0009851: auxin biosynthetic process1.24E-02
139GO:0009809: lignin biosynthetic process1.29E-02
140GO:0010193: response to ozone1.33E-02
141GO:0002229: defense response to oomycetes1.33E-02
142GO:0030091: protein repair1.36E-02
143GO:0010928: regulation of auxin mediated signaling pathway1.36E-02
144GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.36E-02
145GO:0009850: auxin metabolic process1.36E-02
146GO:0043068: positive regulation of programmed cell death1.36E-02
147GO:0009642: response to light intensity1.36E-02
148GO:1900150: regulation of defense response to fungus1.36E-02
149GO:0007166: cell surface receptor signaling pathway1.37E-02
150GO:0043562: cellular response to nitrogen levels1.56E-02
151GO:0009808: lignin metabolic process1.56E-02
152GO:0009699: phenylpropanoid biosynthetic process1.56E-02
153GO:0006526: arginine biosynthetic process1.56E-02
154GO:0010252: auxin homeostasis1.61E-02
155GO:0006904: vesicle docking involved in exocytosis1.71E-02
156GO:0009056: catabolic process1.78E-02
157GO:0007338: single fertilization1.78E-02
158GO:0009821: alkaloid biosynthetic process1.78E-02
159GO:0051865: protein autoubiquitination1.78E-02
160GO:0010112: regulation of systemic acquired resistance1.78E-02
161GO:0051607: defense response to virus1.82E-02
162GO:0009615: response to virus1.93E-02
163GO:0016310: phosphorylation2.00E-02
164GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.00E-02
165GO:0008202: steroid metabolic process2.00E-02
166GO:0009816: defense response to bacterium, incompatible interaction2.04E-02
167GO:0009627: systemic acquired resistance2.16E-02
168GO:0009688: abscisic acid biosynthetic process2.24E-02
169GO:0055062: phosphate ion homeostasis2.24E-02
170GO:0007064: mitotic sister chromatid cohesion2.24E-02
171GO:0009870: defense response signaling pathway, resistance gene-dependent2.24E-02
172GO:0030148: sphingolipid biosynthetic process2.48E-02
173GO:0006816: calcium ion transport2.48E-02
174GO:0009089: lysine biosynthetic process via diaminopimelate2.48E-02
175GO:0052544: defense response by callose deposition in cell wall2.48E-02
176GO:0000272: polysaccharide catabolic process2.48E-02
177GO:0009750: response to fructose2.48E-02
178GO:0071365: cellular response to auxin stimulus2.73E-02
179GO:0000266: mitochondrial fission2.73E-02
180GO:0002213: defense response to insect2.73E-02
181GO:0006499: N-terminal protein myristoylation2.78E-02
182GO:0007568: aging2.92E-02
183GO:0009737: response to abscisic acid2.99E-02
184GO:0006807: nitrogen compound metabolic process3.00E-02
185GO:2000028: regulation of photoperiodism, flowering3.00E-02
186GO:0055046: microgametogenesis3.00E-02
187GO:0009718: anthocyanin-containing compound biosynthetic process3.00E-02
188GO:0006626: protein targeting to mitochondrion3.00E-02
189GO:0046686: response to cadmium ion3.18E-02
190GO:0010143: cutin biosynthetic process3.27E-02
191GO:0010053: root epidermal cell differentiation3.54E-02
192GO:0009969: xyloglucan biosynthetic process3.54E-02
193GO:0009225: nucleotide-sugar metabolic process3.54E-02
194GO:0006633: fatty acid biosynthetic process3.58E-02
195GO:0006839: mitochondrial transport3.64E-02
196GO:0006887: exocytosis3.80E-02
197GO:0010025: wax biosynthetic process3.83E-02
198GO:2000377: regulation of reactive oxygen species metabolic process4.12E-02
199GO:0005992: trehalose biosynthetic process4.12E-02
200GO:0030150: protein import into mitochondrial matrix4.12E-02
201GO:0009416: response to light stimulus4.69E-02
202GO:0016042: lipid catabolic process4.99E-02
RankGO TermAdjusted P value
1GO:0008777: acetylornithine deacetylase activity0.00E+00
2GO:0016504: peptidase activator activity0.00E+00
3GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
4GO:0003837: beta-ureidopropionase activity0.00E+00
5GO:0051670: inulinase activity0.00E+00
6GO:0070577: lysine-acetylated histone binding0.00E+00
7GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
8GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
9GO:0004370: glycerol kinase activity0.00E+00
10GO:0003796: lysozyme activity0.00E+00
11GO:0016301: kinase activity1.24E-10
12GO:0004674: protein serine/threonine kinase activity2.86E-08
13GO:0005217: intracellular ligand-gated ion channel activity1.53E-06
14GO:0004970: ionotropic glutamate receptor activity1.53E-06
15GO:0005524: ATP binding1.75E-06
16GO:0005496: steroid binding9.86E-06
17GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.84E-05
18GO:0102391: decanoate--CoA ligase activity3.04E-05
19GO:0004467: long-chain fatty acid-CoA ligase activity4.67E-05
20GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity7.23E-05
21GO:0004351: glutamate decarboxylase activity1.50E-04
22GO:0008171: O-methyltransferase activity2.03E-04
23GO:0015368: calcium:cation antiporter activity2.53E-04
24GO:0015369: calcium:proton antiporter activity2.53E-04
25GO:0010279: indole-3-acetic acid amido synthetase activity2.53E-04
26GO:0030246: carbohydrate binding5.71E-04
27GO:0050660: flavin adenine dinucleotide binding6.64E-04
28GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.96E-04
29GO:0010285: L,L-diaminopimelate aminotransferase activity7.25E-04
30GO:0031957: very long-chain fatty acid-CoA ligase activity7.25E-04
31GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity7.25E-04
32GO:0031127: alpha-(1,2)-fucosyltransferase activity7.25E-04
33GO:0004425: indole-3-glycerol-phosphate synthase activity7.25E-04
34GO:0033984: indole-3-glycerol-phosphate lyase activity7.25E-04
35GO:0051669: fructan beta-fructosidase activity7.25E-04
36GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity7.25E-04
37GO:0019707: protein-cysteine S-acyltransferase activity7.25E-04
38GO:0031219: levanase activity7.25E-04
39GO:0030145: manganese ion binding1.04E-03
40GO:0015491: cation:cation antiporter activity1.10E-03
41GO:0004103: choline kinase activity1.56E-03
42GO:0004566: beta-glucuronidase activity1.56E-03
43GO:0050291: sphingosine N-acyltransferase activity1.56E-03
44GO:0010297: heteropolysaccharide binding1.56E-03
45GO:0004817: cysteine-tRNA ligase activity1.56E-03
46GO:0045140: inositol phosphoceramide synthase activity1.56E-03
47GO:0032934: sterol binding1.56E-03
48GO:0004061: arylformamidase activity1.56E-03
49GO:0019200: carbohydrate kinase activity1.56E-03
50GO:0042937: tripeptide transporter activity1.56E-03
51GO:0019779: Atg8 activating enzyme activity1.56E-03
52GO:0050736: O-malonyltransferase activity1.56E-03
53GO:0032454: histone demethylase activity (H3-K9 specific)1.56E-03
54GO:0004364: glutathione transferase activity1.66E-03
55GO:0009055: electron carrier activity2.14E-03
56GO:0004568: chitinase activity2.24E-03
57GO:0004713: protein tyrosine kinase activity2.24E-03
58GO:0004383: guanylate cyclase activity2.58E-03
59GO:0016805: dipeptidase activity2.58E-03
60GO:0016595: glutamate binding2.58E-03
61GO:0004478: methionine adenosyltransferase activity2.58E-03
62GO:0001664: G-protein coupled receptor binding2.58E-03
63GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity2.58E-03
64GO:0042409: caffeoyl-CoA O-methyltransferase activity2.58E-03
65GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.58E-03
66GO:0004751: ribose-5-phosphate isomerase activity2.58E-03
67GO:0031683: G-protein beta/gamma-subunit complex binding2.58E-03
68GO:0005262: calcium channel activity3.38E-03
69GO:0005388: calcium-transporting ATPase activity3.38E-03
70GO:0045735: nutrient reservoir activity3.63E-03
71GO:0042299: lupeol synthase activity3.76E-03
72GO:0015189: L-lysine transmembrane transporter activity3.76E-03
73GO:0010178: IAA-amino acid conjugate hydrolase activity3.76E-03
74GO:0015181: arginine transmembrane transporter activity3.76E-03
75GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.39E-03
76GO:0016866: intramolecular transferase activity5.08E-03
77GO:0004930: G-protein coupled receptor activity5.08E-03
78GO:0050373: UDP-arabinose 4-epimerase activity5.08E-03
79GO:0004834: tryptophan synthase activity5.08E-03
80GO:0042936: dipeptide transporter activity5.08E-03
81GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.08E-03
82GO:0070628: proteasome binding5.08E-03
83GO:0004031: aldehyde oxidase activity5.08E-03
84GO:0005313: L-glutamate transmembrane transporter activity5.08E-03
85GO:0050302: indole-3-acetaldehyde oxidase activity5.08E-03
86GO:0009916: alternative oxidase activity5.08E-03
87GO:0005516: calmodulin binding5.87E-03
88GO:0005471: ATP:ADP antiporter activity6.54E-03
89GO:0004356: glutamate-ammonia ligase activity6.54E-03
90GO:0045431: flavonol synthase activity6.54E-03
91GO:0010294: abscisic acid glucosyltransferase activity6.54E-03
92GO:0004040: amidase activity6.54E-03
93GO:0004866: endopeptidase inhibitor activity8.12E-03
94GO:0047714: galactolipase activity8.12E-03
95GO:0003978: UDP-glucose 4-epimerase activity9.83E-03
96GO:0008113: peptide-methionine (S)-S-oxide reductase activity9.83E-03
97GO:0033743: peptide-methionine (R)-S-oxide reductase activity9.83E-03
98GO:0004602: glutathione peroxidase activity9.83E-03
99GO:0005261: cation channel activity9.83E-03
100GO:0004656: procollagen-proline 4-dioxygenase activity9.83E-03
101GO:0004723: calcium-dependent protein serine/threonine phosphatase activity9.83E-03
102GO:0052689: carboxylic ester hydrolase activity1.09E-02
103GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity1.17E-02
104GO:0008235: metalloexopeptidase activity1.17E-02
105GO:0005085: guanyl-nucleotide exchange factor activity1.17E-02
106GO:0046872: metal ion binding1.30E-02
107GO:0004714: transmembrane receptor protein tyrosine kinase activity1.36E-02
108GO:0004034: aldose 1-epimerase activity1.36E-02
109GO:0052747: sinapyl alcohol dehydrogenase activity1.36E-02
110GO:0004033: aldo-keto reductase (NADP) activity1.36E-02
111GO:0008142: oxysterol binding1.56E-02
112GO:0008970: phosphatidylcholine 1-acylhydrolase activity1.56E-02
113GO:0008237: metallopeptidase activity1.71E-02
114GO:0008417: fucosyltransferase activity1.78E-02
115GO:0071949: FAD binding1.78E-02
116GO:0031490: chromatin DNA binding2.00E-02
117GO:0030955: potassium ion binding2.00E-02
118GO:0016844: strictosidine synthase activity2.00E-02
119GO:0004743: pyruvate kinase activity2.00E-02
120GO:0015174: basic amino acid transmembrane transporter activity2.00E-02
121GO:0008168: methyltransferase activity2.04E-02
122GO:0030247: polysaccharide binding2.27E-02
123GO:0004177: aminopeptidase activity2.48E-02
124GO:0008559: xenobiotic-transporting ATPase activity2.48E-02
125GO:0015238: drug transmembrane transporter activity2.65E-02
126GO:0045551: cinnamyl-alcohol dehydrogenase activity2.73E-02
127GO:0000976: transcription regulatory region sequence-specific DNA binding2.73E-02
128GO:0004672: protein kinase activity2.80E-02
129GO:0019888: protein phosphatase regulator activity3.00E-02
130GO:0015114: phosphate ion transmembrane transporter activity3.00E-02
131GO:0004022: alcohol dehydrogenase (NAD) activity3.00E-02
132GO:0015266: protein channel activity3.00E-02
133GO:0030170: pyridoxal phosphate binding3.07E-02
134GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.20E-02
135GO:0008422: beta-glucosidase activity3.49E-02
136GO:0030552: cAMP binding3.54E-02
137GO:0030553: cGMP binding3.54E-02
138GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.68E-02
139GO:0031418: L-ascorbic acid binding4.12E-02
140GO:0003954: NADH dehydrogenase activity4.12E-02
141GO:0004871: signal transducer activity4.12E-02
142GO:0001046: core promoter sequence-specific DNA binding4.12E-02
143GO:0005216: ion channel activity4.42E-02
144GO:0051537: 2 iron, 2 sulfur cluster binding4.45E-02
145GO:0019706: protein-cysteine S-palmitoyltransferase activity4.73E-02
146GO:0004707: MAP kinase activity4.73E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane1.28E-12
2GO:0005886: plasma membrane1.14E-09
3GO:0045252: oxoglutarate dehydrogenase complex7.25E-04
4GO:0005911: cell-cell junction7.25E-04
5GO:0000138: Golgi trans cisterna7.25E-04
6GO:0005576: extracellular region7.96E-04
7GO:0031304: intrinsic component of mitochondrial inner membrane1.56E-03
8GO:0005829: cytosol2.13E-03
9GO:0009530: primary cell wall2.58E-03
10GO:0005783: endoplasmic reticulum3.51E-03
11GO:0070062: extracellular exosome3.76E-03
12GO:0032588: trans-Golgi network membrane8.12E-03
13GO:0005770: late endosome1.07E-02
14GO:0031305: integral component of mitochondrial inner membrane1.36E-02
15GO:0000145: exocyst1.42E-02
16GO:0032580: Golgi cisterna membrane1.61E-02
17GO:0005765: lysosomal membrane2.48E-02
18GO:0000325: plant-type vacuole2.92E-02
19GO:0005769: early endosome3.83E-02
20GO:0009705: plant-type vacuole membrane4.01E-02
21GO:0070469: respiratory chain4.42E-02
22GO:0005839: proteasome core complex4.73E-02
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Gene type



Gene DE type