co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G61380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
3	GO:0071578: zinc II ion transmembrane import	0.00E+00
4	GO:0006983: ER overload response	0.00E+00
5	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
6	GO:0048867: stem cell fate determination	0.00E+00
7	GO:0000188: inactivation of MAPK activity	0.00E+00
8	GO:0006014: D-ribose metabolic process	1.43E-05
9	GO:0035344: hypoxanthine transport	7.58E-05
10	GO:0098721: uracil import across plasma membrane	7.58E-05
11	GO:0098702: adenine import across plasma membrane	7.58E-05
12	GO:0035266: meristem growth	7.58E-05
13	GO:0098710: guanine import across plasma membrane	7.58E-05
14	GO:0048363: mucilage pectin metabolic process	7.58E-05
15	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	7.58E-05
16	GO:0007292: female gamete generation	7.58E-05
17	GO:0051788: response to misfolded protein	1.81E-04
18	GO:0009727: detection of ethylene stimulus	1.81E-04
19	GO:0010163: high-affinity potassium ion import	1.81E-04
20	GO:0043066: negative regulation of apoptotic process	1.81E-04
21	GO:0015865: purine nucleotide transport	1.81E-04
22	GO:0042325: regulation of phosphorylation	1.81E-04
23	GO:0050684: regulation of mRNA processing	1.81E-04
24	GO:0050994: regulation of lipid catabolic process	1.81E-04
25	GO:0048367: shoot system development	2.70E-04
26	GO:0032784: regulation of DNA-templated transcription, elongation	3.05E-04
27	GO:0060968: regulation of gene silencing	3.05E-04
28	GO:0048364: root development	4.07E-04
29	GO:0009399: nitrogen fixation	4.41E-04
30	GO:0080001: mucilage extrusion from seed coat	4.41E-04
31	GO:0010116: positive regulation of abscisic acid biosynthetic process	4.41E-04
32	GO:0048194: Golgi vesicle budding	4.41E-04
33	GO:2001289: lipid X metabolic process	4.41E-04
34	GO:0070301: cellular response to hydrogen peroxide	4.41E-04
35	GO:0046902: regulation of mitochondrial membrane permeability	4.41E-04
36	GO:0072334: UDP-galactose transmembrane transport	4.41E-04
37	GO:0019252: starch biosynthetic process	5.10E-04
38	GO:0061088: regulation of sequestering of zinc ion	5.87E-04
39	GO:0006542: glutamine biosynthetic process	5.87E-04
40	GO:0048015: phosphatidylinositol-mediated signaling	7.44E-04
41	GO:0006090: pyruvate metabolic process	7.44E-04
42	GO:0098719: sodium ion import across plasma membrane	7.44E-04
43	GO:0007029: endoplasmic reticulum organization	7.44E-04
44	GO:0010225: response to UV-C	7.44E-04
45	GO:1900425: negative regulation of defense response to bacterium	9.07E-04
46	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.07E-04
47	GO:0048827: phyllome development	9.07E-04
48	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	9.07E-04
49	GO:0048232: male gamete generation	9.07E-04
50	GO:0043248: proteasome assembly	9.07E-04
51	GO:0010311: lateral root formation	1.05E-03
52	GO:0006694: steroid biosynthetic process	1.08E-03
53	GO:0046686: response to cadmium ion	1.19E-03
54	GO:1902074: response to salt	1.26E-03
55	GO:1900150: regulation of defense response to fungus	1.46E-03
56	GO:0006875: cellular metal ion homeostasis	1.46E-03
57	GO:0010078: maintenance of root meristem identity	1.46E-03
58	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.55E-03
59	GO:0030968: endoplasmic reticulum unfolded protein response	1.66E-03
60	GO:0009827: plant-type cell wall modification	1.66E-03
61	GO:0009051: pentose-phosphate shunt, oxidative branch	1.87E-03
62	GO:0006468: protein phosphorylation	1.95E-03
63	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.09E-03
64	GO:0008202: steroid metabolic process	2.09E-03
65	GO:0051453: regulation of intracellular pH	2.09E-03
66	GO:0043069: negative regulation of programmed cell death	2.32E-03
67	GO:0048829: root cap development	2.32E-03
68	GO:0010629: negative regulation of gene expression	2.32E-03
69	GO:0072593: reactive oxygen species metabolic process	2.56E-03
70	GO:0010015: root morphogenesis	2.56E-03
71	GO:0000038: very long-chain fatty acid metabolic process	2.56E-03
72	GO:0010152: pollen maturation	2.80E-03
73	GO:0071365: cellular response to auxin stimulus	2.80E-03
74	GO:0006108: malate metabolic process	3.06E-03
75	GO:0055046: microgametogenesis	3.06E-03
76	GO:0009933: meristem structural organization	3.32E-03
77	GO:0010167: response to nitrate	3.59E-03
78	GO:0090351: seedling development	3.59E-03
79	GO:0046854: phosphatidylinositol phosphorylation	3.59E-03
80	GO:2000377: regulation of reactive oxygen species metabolic process	4.15E-03
81	GO:0010073: meristem maintenance	4.43E-03
82	GO:0006825: copper ion transport	4.43E-03
83	GO:0006874: cellular calcium ion homeostasis	4.43E-03
84	GO:0051260: protein homooligomerization	4.73E-03
85	GO:0030433: ubiquitin-dependent ERAD pathway	5.03E-03
86	GO:0071215: cellular response to abscisic acid stimulus	5.34E-03
87	GO:0071369: cellular response to ethylene stimulus	5.34E-03
88	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.83E-03
89	GO:0006470: protein dephosphorylation	5.96E-03
90	GO:0042631: cellular response to water deprivation	6.31E-03
91	GO:0046323: glucose import	6.64E-03
92	GO:0006814: sodium ion transport	6.99E-03
93	GO:0009749: response to glucose	7.34E-03
94	GO:0000302: response to reactive oxygen species	7.69E-03
95	GO:0016126: sterol biosynthetic process	9.95E-03
96	GO:0010029: regulation of seed germination	1.03E-02
97	GO:0009816: defense response to bacterium, incompatible interaction	1.03E-02
98	GO:0046777: protein autophosphorylation	1.07E-02
99	GO:0042128: nitrate assimilation	1.07E-02
100	GO:0048573: photoperiodism, flowering	1.12E-02
101	GO:0006499: N-terminal protein myristoylation	1.28E-02
102	GO:0010119: regulation of stomatal movement	1.33E-02
103	GO:0010043: response to zinc ion	1.33E-02
104	GO:0045087: innate immune response	1.42E-02
105	GO:0016051: carbohydrate biosynthetic process	1.42E-02
106	GO:0006839: mitochondrial transport	1.55E-02
107	GO:0006897: endocytosis	1.60E-02
108	GO:0042542: response to hydrogen peroxide	1.65E-02
109	GO:0000209: protein polyubiquitination	1.75E-02
110	GO:0009965: leaf morphogenesis	1.84E-02
111	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.94E-02
112	GO:0006812: cation transport	1.99E-02
113	GO:0009846: pollen germination	1.99E-02
114	GO:0010224: response to UV-B	2.15E-02
115	GO:0006096: glycolytic process	2.36E-02
116	GO:0009626: plant-type hypersensitive response	2.47E-02
117	GO:0009742: brassinosteroid mediated signaling pathway	2.81E-02
118	GO:0055085: transmembrane transport	3.34E-02
119	GO:0009790: embryo development	3.53E-02
120	GO:0006511: ubiquitin-dependent protein catabolic process	3.57E-02
121	GO:0006633: fatty acid biosynthetic process	3.72E-02
122	GO:0016036: cellular response to phosphate starvation	3.78E-02
123	GO:0010150: leaf senescence	3.98E-02
124	GO:0007166: cell surface receptor signaling pathway	4.37E-02
125	GO:0008380: RNA splicing	4.51E-02
126	GO:0006508: proteolysis	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
2	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
3	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
4	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
5	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
6	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
7	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
8	GO:0005548: phospholipid transporter activity	0.00E+00
9	GO:0019829: cation-transporting ATPase activity	1.22E-06
10	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.27E-06
11	GO:0005524: ATP binding	4.87E-06
12	GO:0004012: phospholipid-translocating ATPase activity	2.05E-05
13	GO:0004747: ribokinase activity	2.05E-05
14	GO:0008865: fructokinase activity	3.68E-05
15	GO:0015294: solute:cation symporter activity	7.58E-05
16	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	7.58E-05
17	GO:0015207: adenine transmembrane transporter activity	7.58E-05
18	GO:0015168: glycerol transmembrane transporter activity	7.58E-05
19	GO:0016303: 1-phosphatidylinositol-3-kinase activity	7.58E-05
20	GO:0015208: guanine transmembrane transporter activity	7.58E-05
21	GO:0004112: cyclic-nucleotide phosphodiesterase activity	7.58E-05
22	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	1.81E-04
23	GO:0004566: beta-glucuronidase activity	1.81E-04
24	GO:0004674: protein serine/threonine kinase activity	1.84E-04
25	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	3.05E-04
26	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.05E-04
27	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	3.05E-04
28	GO:0016301: kinase activity	4.31E-04
29	GO:0005354: galactose transmembrane transporter activity	4.41E-04
30	GO:0004470: malic enzyme activity	5.87E-04
31	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	5.87E-04
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.87E-04
33	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	5.87E-04
34	GO:0015210: uracil transmembrane transporter activity	5.87E-04
35	GO:0008948: oxaloacetate decarboxylase activity	7.44E-04
36	GO:0005471: ATP:ADP antiporter activity	7.44E-04
37	GO:0004356: glutamate-ammonia ligase activity	7.44E-04
38	GO:0005459: UDP-galactose transmembrane transporter activity	7.44E-04
39	GO:0015145: monosaccharide transmembrane transporter activity	7.44E-04
40	GO:0015562: efflux transmembrane transporter activity	9.07E-04
41	GO:0036402: proteasome-activating ATPase activity	9.07E-04
42	GO:0000287: magnesium ion binding	1.11E-03
43	GO:0005375: copper ion transmembrane transporter activity	1.66E-03
44	GO:0008142: oxysterol binding	1.66E-03
45	GO:0071949: FAD binding	1.87E-03
46	GO:0030955: potassium ion binding	2.09E-03
47	GO:0004743: pyruvate kinase activity	2.09E-03
48	GO:0004713: protein tyrosine kinase activity	2.32E-03
49	GO:0015386: potassium:proton antiporter activity	2.56E-03
50	GO:0004177: aminopeptidase activity	2.56E-03
51	GO:0004521: endoribonuclease activity	2.80E-03
52	GO:0019888: protein phosphatase regulator activity	3.06E-03
53	GO:0005388: calcium-transporting ATPase activity	3.06E-03
54	GO:0017025: TBP-class protein binding	3.59E-03
55	GO:0004725: protein tyrosine phosphatase activity	3.86E-03
56	GO:0005385: zinc ion transmembrane transporter activity	4.15E-03
57	GO:0016887: ATPase activity	4.21E-03
58	GO:0008324: cation transmembrane transporter activity	4.43E-03
59	GO:0043424: protein histidine kinase binding	4.43E-03
60	GO:0015144: carbohydrate transmembrane transporter activity	4.52E-03
61	GO:0005351: sugar:proton symporter activity	5.09E-03
62	GO:0010181: FMN binding	6.99E-03
63	GO:0005355: glucose transmembrane transporter activity	6.99E-03
64	GO:0015385: sodium:proton antiporter activity	8.42E-03
65	GO:0051213: dioxygenase activity	9.95E-03
66	GO:0061630: ubiquitin protein ligase activity	1.05E-02
67	GO:0030247: polysaccharide binding	1.12E-02
68	GO:0004222: metalloendopeptidase activity	1.28E-02
69	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.42E-02
70	GO:0051287: NAD binding	1.94E-02
71	GO:0004672: protein kinase activity	1.99E-02
72	GO:0022857: transmembrane transporter activity	2.58E-02
73	GO:0030246: carbohydrate binding	3.54E-02
74	GO:0005507: copper ion binding	3.74E-02

Rank	GO Term	Adjusted P value
1	GO:0005942: phosphatidylinositol 3-kinase complex	0.00E+00
2	GO:0005886: plasma membrane	3.27E-10
3	GO:0016021: integral component of membrane	7.46E-07
4	GO:0005789: endoplasmic reticulum membrane	4.24E-06
5	GO:0042406: extrinsic component of endoplasmic reticulum membrane	3.05E-04
6	GO:0031597: cytosolic proteasome complex	1.08E-03
7	GO:0030173: integral component of Golgi membrane	1.08E-03
8	GO:0031595: nuclear proteasome complex	1.26E-03
9	GO:0005783: endoplasmic reticulum	1.56E-03
10	GO:0008540: proteasome regulatory particle, base subcomplex	2.09E-03
11	GO:0005765: lysosomal membrane	2.56E-03
12	GO:0030176: integral component of endoplasmic reticulum membrane	3.59E-03
13	GO:0016020: membrane	4.33E-03
14	GO:0005829: cytosol	5.75E-03
15	GO:0005802: trans-Golgi network	9.10E-03
16	GO:0005768: endosome	1.07E-02
17	GO:0000151: ubiquitin ligase complex	1.20E-02
18	GO:0000786: nucleosome	1.37E-02
19	GO:0031902: late endosome membrane	1.60E-02
20	GO:0009506: plasmodesma	1.77E-02
21	GO:0000502: proteasome complex	2.10E-02
22	GO:0005635: nuclear envelope	2.20E-02
23	GO:0012505: endomembrane system	2.64E-02
24	GO:0005794: Golgi apparatus	3.13E-02
25	GO:0005623: cell	3.22E-02