GO Enrichment Analysis of Co-expressed Genes with
AT1G60800
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0045176: apical protein localization | 0.00E+00 |
| 7 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 8 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 9 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 10 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 4.42E-13 |
| 12 | GO:0015979: photosynthesis | 3.02E-12 |
| 13 | GO:0010027: thylakoid membrane organization | 7.09E-08 |
| 14 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.65E-06 |
| 15 | GO:0018298: protein-chromophore linkage | 4.60E-06 |
| 16 | GO:0009735: response to cytokinin | 3.84E-05 |
| 17 | GO:0034337: RNA folding | 2.82E-04 |
| 18 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.82E-04 |
| 19 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.82E-04 |
| 20 | GO:0043953: protein transport by the Tat complex | 2.82E-04 |
| 21 | GO:0071277: cellular response to calcium ion | 2.82E-04 |
| 22 | GO:0000481: maturation of 5S rRNA | 2.82E-04 |
| 23 | GO:0065002: intracellular protein transmembrane transport | 2.82E-04 |
| 24 | GO:0032544: plastid translation | 3.40E-04 |
| 25 | GO:1900865: chloroplast RNA modification | 4.86E-04 |
| 26 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 6.19E-04 |
| 27 | GO:0080005: photosystem stoichiometry adjustment | 6.19E-04 |
| 28 | GO:0034755: iron ion transmembrane transport | 6.19E-04 |
| 29 | GO:1900871: chloroplast mRNA modification | 6.19E-04 |
| 30 | GO:0042939: tripeptide transport | 6.19E-04 |
| 31 | GO:0015995: chlorophyll biosynthetic process | 6.87E-04 |
| 32 | GO:0006094: gluconeogenesis | 8.46E-04 |
| 33 | GO:0010207: photosystem II assembly | 9.50E-04 |
| 34 | GO:0031022: nuclear migration along microfilament | 1.00E-03 |
| 35 | GO:1902448: positive regulation of shade avoidance | 1.00E-03 |
| 36 | GO:0006000: fructose metabolic process | 1.00E-03 |
| 37 | GO:0006954: inflammatory response | 1.00E-03 |
| 38 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.00E-03 |
| 39 | GO:0006518: peptide metabolic process | 1.00E-03 |
| 40 | GO:0051604: protein maturation | 1.00E-03 |
| 41 | GO:0016050: vesicle organization | 1.00E-03 |
| 42 | GO:0009416: response to light stimulus | 1.07E-03 |
| 43 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.44E-03 |
| 44 | GO:0009152: purine ribonucleotide biosynthetic process | 1.44E-03 |
| 45 | GO:0046653: tetrahydrofolate metabolic process | 1.44E-03 |
| 46 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.44E-03 |
| 47 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.44E-03 |
| 48 | GO:0055085: transmembrane transport | 1.72E-03 |
| 49 | GO:0009765: photosynthesis, light harvesting | 1.92E-03 |
| 50 | GO:0006109: regulation of carbohydrate metabolic process | 1.92E-03 |
| 51 | GO:0045727: positive regulation of translation | 1.92E-03 |
| 52 | GO:0015994: chlorophyll metabolic process | 1.92E-03 |
| 53 | GO:0042938: dipeptide transport | 1.92E-03 |
| 54 | GO:0010021: amylopectin biosynthetic process | 1.92E-03 |
| 55 | GO:0009306: protein secretion | 2.04E-03 |
| 56 | GO:0042335: cuticle development | 2.39E-03 |
| 57 | GO:0006461: protein complex assembly | 2.46E-03 |
| 58 | GO:0032543: mitochondrial translation | 2.46E-03 |
| 59 | GO:0006564: L-serine biosynthetic process | 2.46E-03 |
| 60 | GO:0009904: chloroplast accumulation movement | 2.46E-03 |
| 61 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.46E-03 |
| 62 | GO:0048827: phyllome development | 3.03E-03 |
| 63 | GO:0042549: photosystem II stabilization | 3.03E-03 |
| 64 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.03E-03 |
| 65 | GO:0000470: maturation of LSU-rRNA | 3.03E-03 |
| 66 | GO:0016554: cytidine to uridine editing | 3.03E-03 |
| 67 | GO:0009913: epidermal cell differentiation | 3.03E-03 |
| 68 | GO:0010190: cytochrome b6f complex assembly | 3.03E-03 |
| 69 | GO:0010019: chloroplast-nucleus signaling pathway | 3.65E-03 |
| 70 | GO:0009903: chloroplast avoidance movement | 3.65E-03 |
| 71 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 4.30E-03 |
| 72 | GO:0010196: nonphotochemical quenching | 4.30E-03 |
| 73 | GO:0009645: response to low light intensity stimulus | 4.30E-03 |
| 74 | GO:0008610: lipid biosynthetic process | 4.99E-03 |
| 75 | GO:0009642: response to light intensity | 4.99E-03 |
| 76 | GO:0006605: protein targeting | 4.99E-03 |
| 77 | GO:0009704: de-etiolation | 4.99E-03 |
| 78 | GO:0032508: DNA duplex unwinding | 4.99E-03 |
| 79 | GO:0010492: maintenance of shoot apical meristem identity | 4.99E-03 |
| 80 | GO:0017004: cytochrome complex assembly | 5.72E-03 |
| 81 | GO:0006002: fructose 6-phosphate metabolic process | 5.72E-03 |
| 82 | GO:0071482: cellular response to light stimulus | 5.72E-03 |
| 83 | GO:0009657: plastid organization | 5.72E-03 |
| 84 | GO:0006098: pentose-phosphate shunt | 6.48E-03 |
| 85 | GO:0048507: meristem development | 6.48E-03 |
| 86 | GO:0090333: regulation of stomatal closure | 6.48E-03 |
| 87 | GO:0008152: metabolic process | 7.19E-03 |
| 88 | GO:0010205: photoinhibition | 7.28E-03 |
| 89 | GO:0009638: phototropism | 7.28E-03 |
| 90 | GO:0034599: cellular response to oxidative stress | 7.94E-03 |
| 91 | GO:0000038: very long-chain fatty acid metabolic process | 8.97E-03 |
| 92 | GO:0009073: aromatic amino acid family biosynthetic process | 8.97E-03 |
| 93 | GO:0043085: positive regulation of catalytic activity | 8.97E-03 |
| 94 | GO:0006879: cellular iron ion homeostasis | 8.97E-03 |
| 95 | GO:0009644: response to high light intensity | 1.06E-02 |
| 96 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.08E-02 |
| 97 | GO:0005986: sucrose biosynthetic process | 1.08E-02 |
| 98 | GO:0009785: blue light signaling pathway | 1.08E-02 |
| 99 | GO:0006807: nitrogen compound metabolic process | 1.08E-02 |
| 100 | GO:0010628: positive regulation of gene expression | 1.08E-02 |
| 101 | GO:0010229: inflorescence development | 1.08E-02 |
| 102 | GO:0006855: drug transmembrane transport | 1.14E-02 |
| 103 | GO:0010540: basipetal auxin transport | 1.18E-02 |
| 104 | GO:0010143: cutin biosynthetic process | 1.18E-02 |
| 105 | GO:0019253: reductive pentose-phosphate cycle | 1.18E-02 |
| 106 | GO:0005985: sucrose metabolic process | 1.28E-02 |
| 107 | GO:0071732: cellular response to nitric oxide | 1.28E-02 |
| 108 | GO:0006364: rRNA processing | 1.32E-02 |
| 109 | GO:0010025: wax biosynthetic process | 1.38E-02 |
| 110 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.38E-02 |
| 111 | GO:0008299: isoprenoid biosynthetic process | 1.59E-02 |
| 112 | GO:0016575: histone deacetylation | 1.59E-02 |
| 113 | GO:0006418: tRNA aminoacylation for protein translation | 1.59E-02 |
| 114 | GO:0016226: iron-sulfur cluster assembly | 1.81E-02 |
| 115 | GO:0035428: hexose transmembrane transport | 1.81E-02 |
| 116 | GO:0045454: cell redox homeostasis | 1.90E-02 |
| 117 | GO:0071369: cellular response to ethylene stimulus | 1.93E-02 |
| 118 | GO:0006869: lipid transport | 2.14E-02 |
| 119 | GO:0009409: response to cold | 2.32E-02 |
| 120 | GO:0046323: glucose import | 2.42E-02 |
| 121 | GO:0006662: glycerol ether metabolic process | 2.42E-02 |
| 122 | GO:0007018: microtubule-based movement | 2.54E-02 |
| 123 | GO:0048825: cotyledon development | 2.67E-02 |
| 124 | GO:0019252: starch biosynthetic process | 2.67E-02 |
| 125 | GO:0008654: phospholipid biosynthetic process | 2.67E-02 |
| 126 | GO:0080156: mitochondrial mRNA modification | 2.81E-02 |
| 127 | GO:0000302: response to reactive oxygen species | 2.81E-02 |
| 128 | GO:0006633: fatty acid biosynthetic process | 2.97E-02 |
| 129 | GO:0071281: cellular response to iron ion | 3.08E-02 |
| 130 | GO:0009567: double fertilization forming a zygote and endosperm | 3.22E-02 |
| 131 | GO:0007623: circadian rhythm | 3.27E-02 |
| 132 | GO:0009911: positive regulation of flower development | 3.65E-02 |
| 133 | GO:0001666: response to hypoxia | 3.65E-02 |
| 134 | GO:0000160: phosphorelay signal transduction system | 4.56E-02 |
| 135 | GO:0010218: response to far red light | 4.72E-02 |
| 136 | GO:0009631: cold acclimation | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 5 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 7 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 8 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 9 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 10 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 11 | GO:0016168: chlorophyll binding | 2.64E-06 |
| 12 | GO:0070402: NADPH binding | 1.31E-05 |
| 13 | GO:0043495: protein anchor | 5.29E-05 |
| 14 | GO:0005528: FK506 binding | 9.62E-05 |
| 15 | GO:0022891: substrate-specific transmembrane transporter activity | 1.67E-04 |
| 16 | GO:0019899: enzyme binding | 2.19E-04 |
| 17 | GO:0003867: 4-aminobutyrate transaminase activity | 2.82E-04 |
| 18 | GO:0004856: xylulokinase activity | 2.82E-04 |
| 19 | GO:0045485: omega-6 fatty acid desaturase activity | 2.82E-04 |
| 20 | GO:0070006: metalloaminopeptidase activity | 2.82E-04 |
| 21 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.57E-04 |
| 22 | GO:0047746: chlorophyllase activity | 6.19E-04 |
| 23 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 6.19E-04 |
| 24 | GO:0004617: phosphoglycerate dehydrogenase activity | 6.19E-04 |
| 25 | GO:0033201: alpha-1,4-glucan synthase activity | 6.19E-04 |
| 26 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 6.19E-04 |
| 27 | GO:0018708: thiol S-methyltransferase activity | 6.19E-04 |
| 28 | GO:0016630: protochlorophyllide reductase activity | 6.19E-04 |
| 29 | GO:0042937: tripeptide transporter activity | 6.19E-04 |
| 30 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.00E-03 |
| 31 | GO:0004373: glycogen (starch) synthase activity | 1.00E-03 |
| 32 | GO:0002161: aminoacyl-tRNA editing activity | 1.00E-03 |
| 33 | GO:0004751: ribose-5-phosphate isomerase activity | 1.00E-03 |
| 34 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.00E-03 |
| 35 | GO:0031409: pigment binding | 1.18E-03 |
| 36 | GO:0019201: nucleotide kinase activity | 1.44E-03 |
| 37 | GO:0016851: magnesium chelatase activity | 1.44E-03 |
| 38 | GO:0048487: beta-tubulin binding | 1.44E-03 |
| 39 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 1.44E-03 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.75E-03 |
| 41 | GO:0042936: dipeptide transporter activity | 1.92E-03 |
| 42 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.92E-03 |
| 43 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.92E-03 |
| 44 | GO:0080032: methyl jasmonate esterase activity | 1.92E-03 |
| 45 | GO:0009011: starch synthase activity | 1.92E-03 |
| 46 | GO:0016787: hydrolase activity | 2.39E-03 |
| 47 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.46E-03 |
| 48 | GO:0003959: NADPH dehydrogenase activity | 2.46E-03 |
| 49 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.03E-03 |
| 50 | GO:0004332: fructose-bisphosphate aldolase activity | 3.03E-03 |
| 51 | GO:0004130: cytochrome-c peroxidase activity | 3.03E-03 |
| 52 | GO:0042578: phosphoric ester hydrolase activity | 3.03E-03 |
| 53 | GO:0016688: L-ascorbate peroxidase activity | 3.03E-03 |
| 54 | GO:0004017: adenylate kinase activity | 3.65E-03 |
| 55 | GO:0019843: rRNA binding | 4.38E-03 |
| 56 | GO:0004871: signal transducer activity | 4.83E-03 |
| 57 | GO:0008312: 7S RNA binding | 4.99E-03 |
| 58 | GO:0004033: aldo-keto reductase (NADP) activity | 4.99E-03 |
| 59 | GO:0043022: ribosome binding | 4.99E-03 |
| 60 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 5.72E-03 |
| 61 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.98E-03 |
| 62 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 6.48E-03 |
| 63 | GO:0004222: metalloendopeptidase activity | 6.60E-03 |
| 64 | GO:0005381: iron ion transmembrane transporter activity | 7.28E-03 |
| 65 | GO:0008047: enzyme activator activity | 8.11E-03 |
| 66 | GO:0042802: identical protein binding | 8.96E-03 |
| 67 | GO:0015386: potassium:proton antiporter activity | 8.97E-03 |
| 68 | GO:0004177: aminopeptidase activity | 8.97E-03 |
| 69 | GO:0004565: beta-galactosidase activity | 1.08E-02 |
| 70 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.08E-02 |
| 71 | GO:0008266: poly(U) RNA binding | 1.18E-02 |
| 72 | GO:0016788: hydrolase activity, acting on ester bonds | 1.18E-02 |
| 73 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.38E-02 |
| 74 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.38E-02 |
| 75 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.38E-02 |
| 76 | GO:0051536: iron-sulfur cluster binding | 1.48E-02 |
| 77 | GO:0004857: enzyme inhibitor activity | 1.48E-02 |
| 78 | GO:0004407: histone deacetylase activity | 1.48E-02 |
| 79 | GO:0043424: protein histidine kinase binding | 1.59E-02 |
| 80 | GO:0015079: potassium ion transmembrane transporter activity | 1.59E-02 |
| 81 | GO:0004176: ATP-dependent peptidase activity | 1.70E-02 |
| 82 | GO:0016746: transferase activity, transferring acyl groups | 1.95E-02 |
| 83 | GO:0004812: aminoacyl-tRNA ligase activity | 2.17E-02 |
| 84 | GO:0047134: protein-disulfide reductase activity | 2.17E-02 |
| 85 | GO:0016491: oxidoreductase activity | 2.22E-02 |
| 86 | GO:0004791: thioredoxin-disulfide reductase activity | 2.54E-02 |
| 87 | GO:0016853: isomerase activity | 2.54E-02 |
| 88 | GO:0005355: glucose transmembrane transporter activity | 2.54E-02 |
| 89 | GO:0050662: coenzyme binding | 2.54E-02 |
| 90 | GO:0009055: electron carrier activity | 2.70E-02 |
| 91 | GO:0003729: mRNA binding | 2.72E-02 |
| 92 | GO:0004519: endonuclease activity | 2.75E-02 |
| 93 | GO:0048038: quinone binding | 2.81E-02 |
| 94 | GO:0004518: nuclease activity | 2.94E-02 |
| 95 | GO:0000156: phosphorelay response regulator activity | 3.08E-02 |
| 96 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.08E-02 |
| 97 | GO:0016791: phosphatase activity | 3.22E-02 |
| 98 | GO:0008237: metallopeptidase activity | 3.36E-02 |
| 99 | GO:0016597: amino acid binding | 3.50E-02 |
| 100 | GO:0004721: phosphoprotein phosphatase activity | 4.10E-02 |
| 101 | GO:0008236: serine-type peptidase activity | 4.25E-02 |
| 102 | GO:0015238: drug transmembrane transporter activity | 4.56E-02 |
| 103 | GO:0003723: RNA binding | 4.57E-02 |
| 104 | GO:0005215: transporter activity | 4.82E-02 |
| 105 | GO:0008168: methyltransferase activity | 4.84E-02 |
| 106 | GO:0030145: manganese ion binding | 4.88E-02 |
| 107 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 5.00E-57 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.38E-39 |
| 6 | GO:0009570: chloroplast stroma | 1.59E-20 |
| 7 | GO:0009941: chloroplast envelope | 2.18E-19 |
| 8 | GO:0009534: chloroplast thylakoid | 3.50E-19 |
| 9 | GO:0009579: thylakoid | 1.25E-10 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.71E-09 |
| 11 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.85E-07 |
| 12 | GO:0016021: integral component of membrane | 4.03E-06 |
| 13 | GO:0042651: thylakoid membrane | 4.08E-06 |
| 14 | GO:0009523: photosystem II | 2.01E-05 |
| 15 | GO:0010287: plastoglobule | 1.05E-04 |
| 16 | GO:0031977: thylakoid lumen | 1.69E-04 |
| 17 | GO:0031361: integral component of thylakoid membrane | 2.82E-04 |
| 18 | GO:0009782: photosystem I antenna complex | 2.82E-04 |
| 19 | GO:0080085: signal recognition particle, chloroplast targeting | 6.19E-04 |
| 20 | GO:0031969: chloroplast membrane | 7.50E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 1.00E-03 |
| 22 | GO:0033281: TAT protein transport complex | 1.00E-03 |
| 23 | GO:0030076: light-harvesting complex | 1.06E-03 |
| 24 | GO:0009654: photosystem II oxygen evolving complex | 1.44E-03 |
| 25 | GO:0009526: plastid envelope | 1.92E-03 |
| 26 | GO:0055035: plastid thylakoid membrane | 2.46E-03 |
| 27 | GO:0019898: extrinsic component of membrane | 2.97E-03 |
| 28 | GO:0009706: chloroplast inner membrane | 3.29E-03 |
| 29 | GO:0009295: nucleoid | 4.08E-03 |
| 30 | GO:0009533: chloroplast stromal thylakoid | 4.30E-03 |
| 31 | GO:0009501: amyloplast | 4.99E-03 |
| 32 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 5.72E-03 |
| 33 | GO:0032040: small-subunit processome | 9.88E-03 |
| 34 | GO:0009508: plastid chromosome | 1.08E-02 |
| 35 | GO:0030095: chloroplast photosystem II | 1.18E-02 |
| 36 | GO:0005840: ribosome | 1.50E-02 |
| 37 | GO:0016020: membrane | 1.55E-02 |
| 38 | GO:0005871: kinesin complex | 2.17E-02 |
| 39 | GO:0005770: late endosome | 2.42E-02 |
| 40 | GO:0005623: cell | 2.43E-02 |
| 41 | GO:0009522: photosystem I | 2.54E-02 |
| 42 | GO:0010319: stromule | 3.36E-02 |
| 43 | GO:0030529: intracellular ribonucleoprotein complex | 3.65E-02 |
| 44 | GO:0015934: large ribosomal subunit | 4.88E-02 |