Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0009773: photosynthetic electron transport in photosystem I8.17E-11
7GO:0009658: chloroplast organization1.04E-06
8GO:0030388: fructose 1,6-bisphosphate metabolic process4.02E-06
9GO:0016117: carotenoid biosynthetic process1.26E-05
10GO:0006000: fructose metabolic process1.44E-05
11GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.21E-05
12GO:0018119: peptidyl-cysteine S-nitrosylation3.45E-05
13GO:0055114: oxidation-reduction process4.45E-05
14GO:0009735: response to cytokinin4.89E-05
15GO:0006094: gluconeogenesis5.34E-05
16GO:0009767: photosynthetic electron transport chain5.34E-05
17GO:0019464: glycine decarboxylation via glycine cleavage system5.77E-05
18GO:0006546: glycine catabolic process5.77E-05
19GO:0019253: reductive pentose-phosphate cycle6.46E-05
20GO:0010207: photosystem II assembly6.46E-05
21GO:0016123: xanthophyll biosynthetic process9.10E-05
22GO:0018298: protein-chromophore linkage9.24E-05
23GO:0006810: transport9.54E-05
24GO:0006086: acetyl-CoA biosynthetic process from pyruvate1.32E-04
25GO:0015979: photosynthesis2.27E-04
26GO:0010196: nonphotochemical quenching2.36E-04
27GO:0006659: phosphatidylserine biosynthetic process2.97E-04
28GO:0033481: galacturonate biosynthetic process2.97E-04
29GO:0071588: hydrogen peroxide mediated signaling pathway2.97E-04
30GO:0010362: negative regulation of anion channel activity by blue light2.97E-04
31GO:0009443: pyridoxal 5'-phosphate salvage2.97E-04
32GO:0009791: post-embryonic development3.49E-04
33GO:0032544: plastid translation3.66E-04
34GO:0006002: fructose 6-phosphate metabolic process3.66E-04
35GO:0042742: defense response to bacterium4.60E-04
36GO:0097054: L-glutamate biosynthetic process6.50E-04
37GO:1904143: positive regulation of carotenoid biosynthetic process6.50E-04
38GO:0080183: response to photooxidative stress6.50E-04
39GO:0010275: NAD(P)H dehydrogenase complex assembly6.50E-04
40GO:0015786: UDP-glucose transport6.50E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process6.50E-04
42GO:0006415: translational termination7.02E-04
43GO:0005986: sucrose biosynthetic process9.08E-04
44GO:0006696: ergosterol biosynthetic process1.05E-03
45GO:0015783: GDP-fucose transport1.05E-03
46GO:0090506: axillary shoot meristem initiation1.05E-03
47GO:0006518: peptide metabolic process1.05E-03
48GO:0009853: photorespiration1.15E-03
49GO:0009833: plant-type primary cell wall biogenesis1.27E-03
50GO:0043572: plastid fission1.51E-03
51GO:0016556: mRNA modification1.51E-03
52GO:0006537: glutamate biosynthetic process1.51E-03
53GO:0072334: UDP-galactose transmembrane transport1.51E-03
54GO:0009768: photosynthesis, light harvesting in photosystem I1.55E-03
55GO:0061077: chaperone-mediated protein folding1.70E-03
56GO:0009902: chloroplast relocation2.02E-03
57GO:0019676: ammonia assimilation cycle2.02E-03
58GO:0009765: photosynthesis, light harvesting2.02E-03
59GO:0045727: positive regulation of translation2.02E-03
60GO:0031122: cytoplasmic microtubule organization2.02E-03
61GO:0006021: inositol biosynthetic process2.02E-03
62GO:0042631: cellular response to water deprivation2.57E-03
63GO:0016120: carotene biosynthetic process2.58E-03
64GO:0006564: L-serine biosynthetic process2.58E-03
65GO:0006656: phosphatidylcholine biosynthetic process2.58E-03
66GO:0043097: pyrimidine nucleoside salvage2.58E-03
67GO:0046785: microtubule polymerization2.58E-03
68GO:0009741: response to brassinosteroid2.77E-03
69GO:0006096: glycolytic process2.86E-03
70GO:0006206: pyrimidine nucleobase metabolic process3.19E-03
71GO:0042549: photosystem II stabilization3.19E-03
72GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.19E-03
73GO:0070814: hydrogen sulfide biosynthetic process3.19E-03
74GO:0010358: leaf shaping3.19E-03
75GO:0010190: cytochrome b6f complex assembly3.19E-03
76GO:0007264: small GTPase mediated signal transduction3.65E-03
77GO:1901259: chloroplast rRNA processing3.84E-03
78GO:0009854: oxidative photosynthetic carbon pathway3.84E-03
79GO:0010019: chloroplast-nucleus signaling pathway3.84E-03
80GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.84E-03
81GO:0010067: procambium histogenesis3.84E-03
82GO:0006458: 'de novo' protein folding3.84E-03
83GO:0042026: protein refolding3.84E-03
84GO:0050829: defense response to Gram-negative bacterium4.53E-03
85GO:0009645: response to low light intensity stimulus4.53E-03
86GO:0010027: thylakoid membrane organization4.94E-03
87GO:0071555: cell wall organization5.03E-03
88GO:0009704: de-etiolation5.26E-03
89GO:0016559: peroxisome fission5.26E-03
90GO:0007155: cell adhesion5.26E-03
91GO:0048564: photosystem I assembly5.26E-03
92GO:0009819: drought recovery5.26E-03
93GO:0009657: plastid organization6.03E-03
94GO:0017004: cytochrome complex assembly6.03E-03
95GO:0071482: cellular response to light stimulus6.03E-03
96GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.03E-03
97GO:0030244: cellulose biosynthetic process6.45E-03
98GO:0000160: phosphorelay signal transduction system6.78E-03
99GO:0000902: cell morphogenesis6.83E-03
100GO:0090305: nucleic acid phosphodiester bond hydrolysis6.83E-03
101GO:0006098: pentose-phosphate shunt6.83E-03
102GO:0009407: toxin catabolic process7.11E-03
103GO:0007623: circadian rhythm7.26E-03
104GO:0009638: phototropism7.67E-03
105GO:1900865: chloroplast RNA modification7.67E-03
106GO:0009637: response to blue light8.18E-03
107GO:0019538: protein metabolic process8.55E-03
108GO:0000103: sulfate assimilation8.55E-03
109GO:0045036: protein targeting to chloroplast8.55E-03
110GO:0010192: mucilage biosynthetic process8.55E-03
111GO:0009970: cellular response to sulfate starvation8.55E-03
112GO:0000272: polysaccharide catabolic process9.46E-03
113GO:0019684: photosynthesis, light reaction9.46E-03
114GO:0009744: response to sucrose1.06E-02
115GO:0009725: response to hormone1.14E-02
116GO:0009636: response to toxic substance1.19E-02
117GO:0010223: secondary shoot formation1.24E-02
118GO:0010020: chloroplast fission1.24E-02
119GO:0005985: sucrose metabolic process1.34E-02
120GO:0009225: nucleotide-sugar metabolic process1.34E-02
121GO:0007031: peroxisome organization1.34E-02
122GO:0019762: glucosinolate catabolic process1.45E-02
123GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.74E-02
124GO:0046777: protein autophosphorylation1.81E-02
125GO:0006730: one-carbon metabolic process1.91E-02
126GO:0080092: regulation of pollen tube growth1.91E-02
127GO:0019748: secondary metabolic process1.91E-02
128GO:0016226: iron-sulfur cluster assembly1.91E-02
129GO:0009294: DNA mediated transformation2.03E-02
130GO:0001944: vasculature development2.03E-02
131GO:0045454: cell redox homeostasis2.09E-02
132GO:0019722: calcium-mediated signaling2.16E-02
133GO:0010089: xylem development2.16E-02
134GO:0009742: brassinosteroid mediated signaling pathway2.16E-02
135GO:0006869: lipid transport2.35E-02
136GO:0042335: cuticle development2.42E-02
137GO:0010087: phloem or xylem histogenesis2.42E-02
138GO:0010118: stomatal movement2.42E-02
139GO:0048868: pollen tube development2.55E-02
140GO:0010268: brassinosteroid homeostasis2.55E-02
141GO:0008360: regulation of cell shape2.55E-02
142GO:0032259: methylation2.58E-02
143GO:0015986: ATP synthesis coupled proton transport2.68E-02
144GO:0006814: sodium ion transport2.68E-02
145GO:0009646: response to absence of light2.68E-02
146GO:0019252: starch biosynthetic process2.82E-02
147GO:0008654: phospholipid biosynthetic process2.82E-02
148GO:0016132: brassinosteroid biosynthetic process2.96E-02
149GO:0080156: mitochondrial mRNA modification2.96E-02
150GO:0000302: response to reactive oxygen species2.96E-02
151GO:0009753: response to jasmonic acid2.97E-02
152GO:0032502: developmental process3.10E-02
153GO:0010583: response to cyclopentenone3.10E-02
154GO:0005975: carbohydrate metabolic process3.19E-02
155GO:0010090: trichome morphogenesis3.25E-02
156GO:1901657: glycosyl compound metabolic process3.25E-02
157GO:0046686: response to cadmium ion3.33E-02
158GO:0016125: sterol metabolic process3.39E-02
159GO:0007267: cell-cell signaling3.55E-02
160GO:0010286: heat acclimation3.55E-02
161GO:0071805: potassium ion transmembrane transport3.55E-02
162GO:0016126: sterol biosynthetic process3.85E-02
163GO:0009816: defense response to bacterium, incompatible interaction4.00E-02
164GO:0009607: response to biotic stimulus4.00E-02
165GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.00E-02
166GO:0042128: nitrate assimilation4.16E-02
167GO:0006508: proteolysis4.25E-02
168GO:0009817: defense response to fungus, incompatible interaction4.65E-02
169GO:0009832: plant-type cell wall biogenesis4.81E-02
170GO:0010218: response to far red light4.98E-02
RankGO TermAdjusted P value
1GO:0008974: phosphoribulokinase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0046905: phytoene synthase activity0.00E+00
4GO:0008465: glycerate dehydrogenase activity0.00E+00
5GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
6GO:0051738: xanthophyll binding0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
9GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
10GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
11GO:0050613: delta14-sterol reductase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.02E-06
14GO:0004033: aldo-keto reductase (NADP) activity7.70E-06
15GO:0004375: glycine dehydrogenase (decarboxylating) activity3.21E-05
16GO:0016149: translation release factor activity, codon specific3.21E-05
17GO:0031072: heat shock protein binding5.34E-05
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.77E-05
19GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity5.77E-05
20GO:0004222: metalloendopeptidase activity1.10E-04
21GO:0051920: peroxiredoxin activity1.81E-04
22GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.81E-04
23GO:0003867: 4-aminobutyrate transaminase activity2.97E-04
24GO:0051996: squalene synthase activity2.97E-04
25GO:0016041: glutamate synthase (ferredoxin) activity2.97E-04
26GO:0030941: chloroplast targeting sequence binding2.97E-04
27GO:0010012: steroid 22-alpha hydroxylase activity2.97E-04
28GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.97E-04
29GO:0009496: plastoquinol--plastocyanin reductase activity2.97E-04
30GO:0008568: microtubule-severing ATPase activity2.97E-04
31GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.97E-04
32GO:0016209: antioxidant activity2.98E-04
33GO:0003747: translation release factor activity4.41E-04
34GO:0051082: unfolded protein binding6.22E-04
35GO:0004512: inositol-3-phosphate synthase activity6.50E-04
36GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.50E-04
37GO:0000234: phosphoethanolamine N-methyltransferase activity6.50E-04
38GO:0008967: phosphoglycolate phosphatase activity6.50E-04
39GO:0010291: carotene beta-ring hydroxylase activity6.50E-04
40GO:0010297: heteropolysaccharide binding6.50E-04
41GO:0004617: phosphoglycerate dehydrogenase activity6.50E-04
42GO:0004047: aminomethyltransferase activity6.50E-04
43GO:0008805: carbon-monoxide oxygenase activity6.50E-04
44GO:0004802: transketolase activity6.50E-04
45GO:0016168: chlorophyll binding6.58E-04
46GO:0019843: rRNA binding8.75E-04
47GO:0004148: dihydrolipoyl dehydrogenase activity1.05E-03
48GO:0004781: sulfate adenylyltransferase (ATP) activity1.05E-03
49GO:0070402: NADPH binding1.05E-03
50GO:0005457: GDP-fucose transmembrane transporter activity1.05E-03
51GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.05E-03
52GO:0070330: aromatase activity1.05E-03
53GO:0003913: DNA photolyase activity1.05E-03
54GO:0031409: pigment binding1.27E-03
55GO:0005460: UDP-glucose transmembrane transporter activity1.51E-03
56GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.51E-03
57GO:0009882: blue light photoreceptor activity1.51E-03
58GO:0008508: bile acid:sodium symporter activity1.51E-03
59GO:0015079: potassium ion transmembrane transporter activity1.55E-03
60GO:0051537: 2 iron, 2 sulfur cluster binding1.75E-03
61GO:0005319: lipid transporter activity2.02E-03
62GO:0051861: glycolipid binding2.02E-03
63GO:1990137: plant seed peroxidase activity2.02E-03
64GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.02E-03
65GO:0050378: UDP-glucuronate 4-epimerase activity2.02E-03
66GO:0018685: alkane 1-monooxygenase activity2.58E-03
67GO:0051538: 3 iron, 4 sulfur cluster binding2.58E-03
68GO:0008374: O-acyltransferase activity2.58E-03
69GO:0005459: UDP-galactose transmembrane transporter activity2.58E-03
70GO:0016688: L-ascorbate peroxidase activity3.19E-03
71GO:0042578: phosphoric ester hydrolase activity3.19E-03
72GO:0080030: methyl indole-3-acetate esterase activity3.19E-03
73GO:0004332: fructose-bisphosphate aldolase activity3.19E-03
74GO:0004130: cytochrome-c peroxidase activity3.19E-03
75GO:0048038: quinone binding3.42E-03
76GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.84E-03
77GO:0051753: mannan synthase activity3.84E-03
78GO:0004849: uridine kinase activity3.84E-03
79GO:0016759: cellulose synthase activity4.15E-03
80GO:0008237: metallopeptidase activity4.40E-03
81GO:0043295: glutathione binding4.53E-03
82GO:0009881: photoreceptor activity4.53E-03
83GO:0046872: metal ion binding4.99E-03
84GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.99E-03
85GO:0052747: sinapyl alcohol dehydrogenase activity5.26E-03
86GO:0008135: translation factor activity, RNA binding6.03E-03
87GO:0003843: 1,3-beta-D-glucan synthase activity6.03E-03
88GO:0015078: hydrogen ion transmembrane transporter activity6.03E-03
89GO:0016787: hydrolase activity8.08E-03
90GO:0030234: enzyme regulator activity8.55E-03
91GO:0005515: protein binding9.10E-03
92GO:0044183: protein binding involved in protein folding9.46E-03
93GO:0047372: acylglycerol lipase activity9.46E-03
94GO:0005089: Rho guanyl-nucleotide exchange factor activity9.46E-03
95GO:0015386: potassium:proton antiporter activity9.46E-03
96GO:0004364: glutathione transferase activity1.01E-02
97GO:0045551: cinnamyl-alcohol dehydrogenase activity1.04E-02
98GO:0004185: serine-type carboxypeptidase activity1.06E-02
99GO:0004089: carbonate dehydratase activity1.14E-02
100GO:0000155: phosphorelay sensor kinase activity1.14E-02
101GO:0004565: beta-galactosidase activity1.14E-02
102GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.24E-02
103GO:0008266: poly(U) RNA binding1.24E-02
104GO:0051287: NAD binding1.28E-02
105GO:0005509: calcium ion binding1.37E-02
106GO:0051536: iron-sulfur cluster binding1.56E-02
107GO:0005528: FK506 binding1.56E-02
108GO:0043424: protein histidine kinase binding1.68E-02
109GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.75E-02
110GO:0004176: ATP-dependent peptidase activity1.79E-02
111GO:0033612: receptor serine/threonine kinase binding1.79E-02
112GO:0003824: catalytic activity1.85E-02
113GO:0016760: cellulose synthase (UDP-forming) activity2.03E-02
114GO:0022891: substrate-specific transmembrane transporter activity2.03E-02
115GO:0003756: protein disulfide isomerase activity2.16E-02
116GO:0005102: receptor binding2.29E-02
117GO:0016491: oxidoreductase activity2.52E-02
118GO:0010181: FMN binding2.68E-02
119GO:0050662: coenzyme binding2.68E-02
120GO:0003924: GTPase activity2.72E-02
121GO:0004872: receptor activity2.82E-02
122GO:0019901: protein kinase binding2.82E-02
123GO:0009055: electron carrier activity2.97E-02
124GO:0004518: nuclease activity3.10E-02
125GO:0000156: phosphorelay response regulator activity3.25E-02
126GO:0005525: GTP binding3.45E-02
127GO:0008483: transaminase activity3.55E-02
128GO:0016722: oxidoreductase activity, oxidizing metal ions3.55E-02
129GO:0016597: amino acid binding3.70E-02
130GO:0009931: calcium-dependent protein serine/threonine kinase activity4.16E-02
131GO:0004683: calmodulin-dependent protein kinase activity4.32E-02
132GO:0102483: scopolin beta-glucosidase activity4.32E-02
133GO:0042802: identical protein binding4.46E-02
134GO:0005506: iron ion binding4.55E-02
135GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.98E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast2.39E-43
4GO:0009535: chloroplast thylakoid membrane1.68E-29
5GO:0009941: chloroplast envelope2.44E-24
6GO:0009570: chloroplast stroma4.48E-16
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.99E-14
8GO:0009579: thylakoid1.09E-12
9GO:0009534: chloroplast thylakoid1.17E-12
10GO:0048046: apoplast2.42E-11
11GO:0010287: plastoglobule7.92E-07
12GO:0009654: photosystem II oxygen evolving complex4.80E-06
13GO:0005960: glycine cleavage complex3.21E-05
14GO:0030095: chloroplast photosystem II6.46E-05
15GO:0009543: chloroplast thylakoid lumen1.37E-04
16GO:0031969: chloroplast membrane1.69E-04
17GO:0043190: ATP-binding cassette (ABC) transporter complex2.97E-04
18GO:0009782: photosystem I antenna complex2.97E-04
19GO:0019898: extrinsic component of membrane3.49E-04
20GO:0010319: stromule5.29E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex6.50E-04
22GO:0030076: light-harvesting complex1.14E-03
23GO:0009517: PSII associated light-harvesting complex II2.02E-03
24GO:0016021: integral component of membrane2.35E-03
25GO:0009512: cytochrome b6f complex2.58E-03
26GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.19E-03
27GO:0009523: photosystem II3.20E-03
28GO:0016020: membrane3.40E-03
29GO:0009706: chloroplast inner membrane3.62E-03
30GO:0031359: integral component of chloroplast outer membrane4.53E-03
31GO:0009533: chloroplast stromal thylakoid4.53E-03
32GO:0000148: 1,3-beta-D-glucan synthase complex6.03E-03
33GO:0005811: lipid particle6.03E-03
34GO:0005779: integral component of peroxisomal membrane6.03E-03
35GO:0009539: photosystem II reaction center6.03E-03
36GO:0009707: chloroplast outer membrane6.45E-03
37GO:0015934: large ribosomal subunit7.46E-03
38GO:0009536: plastid7.50E-03
39GO:0055028: cortical microtubule8.55E-03
40GO:0016324: apical plasma membrane8.55E-03
41GO:0046658: anchored component of plasma membrane1.04E-02
42GO:0000311: plastid large ribosomal subunit1.04E-02
43GO:0009508: plastid chromosome1.14E-02
44GO:0030176: integral component of endoplasmic reticulum membrane1.34E-02
45GO:0042651: thylakoid membrane1.68E-02
46GO:0009505: plant-type cell wall2.32E-02
47GO:0009522: photosystem I2.68E-02
48GO:0005759: mitochondrial matrix3.20E-02
49GO:0032580: Golgi cisterna membrane3.39E-02
50GO:0005778: peroxisomal membrane3.55E-02
51GO:0009295: nucleoid3.55E-02
52GO:0005615: extracellular space3.93E-02
<
Gene type



Gene DE type