co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080052: response to histidine	0.00E+00
2	GO:0080053: response to phenylalanine	0.00E+00
3	GO:0006793: phosphorus metabolic process	0.00E+00
4	GO:0036503: ERAD pathway	0.00E+00
5	GO:0006182: cGMP biosynthetic process	0.00E+00
6	GO:0043201: response to leucine	0.00E+00
7	GO:0010120: camalexin biosynthetic process	4.44E-08
8	GO:0009617: response to bacterium	5.39E-08
9	GO:0042742: defense response to bacterium	3.25E-07
10	GO:0009620: response to fungus	1.29E-06
11	GO:0006952: defense response	1.38E-06
12	GO:0009751: response to salicylic acid	1.50E-06
13	GO:0009817: defense response to fungus, incompatible interaction	3.66E-05
14	GO:0006874: cellular calcium ion homeostasis	5.99E-05
15	GO:0071456: cellular response to hypoxia	7.99E-05
16	GO:0010150: leaf senescence	9.61E-05
17	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.06E-04
18	GO:0009636: response to toxic substance	1.15E-04
19	GO:0030091: protein repair	1.78E-04
20	GO:0009700: indole phytoalexin biosynthetic process	2.11E-04
21	GO:0046244: salicylic acid catabolic process	2.11E-04
22	GO:1901183: positive regulation of camalexin biosynthetic process	2.11E-04
23	GO:0051938: L-glutamate import	2.11E-04
24	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.11E-04
25	GO:0006468: protein phosphorylation	4.20E-04
26	GO:0009682: induced systemic resistance	4.36E-04
27	GO:0030003: cellular cation homeostasis	4.71E-04
28	GO:0042939: tripeptide transport	4.71E-04
29	GO:0043091: L-arginine import	4.71E-04
30	GO:0051592: response to calcium ion	4.71E-04
31	GO:0080183: response to photooxidative stress	4.71E-04
32	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.71E-04
33	GO:0015802: basic amino acid transport	4.71E-04
34	GO:0009866: induced systemic resistance, ethylene mediated signaling pathway	4.71E-04
35	GO:0009407: toxin catabolic process	5.23E-04
36	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7.67E-04
37	GO:0034051: negative regulation of plant-type hypersensitive response	7.67E-04
38	GO:0010351: lithium ion transport	7.67E-04
39	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	7.67E-04
40	GO:0042542: response to hydrogen peroxide	8.15E-04
41	GO:0006855: drug transmembrane transport	1.04E-03
42	GO:0003333: amino acid transmembrane transport	1.05E-03
43	GO:0006882: cellular zinc ion homeostasis	1.09E-03
44	GO:0019438: aromatic compound biosynthetic process	1.09E-03
45	GO:0002239: response to oomycetes	1.09E-03
46	GO:0072334: UDP-galactose transmembrane transport	1.09E-03
47	GO:0030100: regulation of endocytosis	1.09E-03
48	GO:0042938: dipeptide transport	1.45E-03
49	GO:0010387: COP9 signalosome assembly	1.45E-03
50	GO:0045088: regulation of innate immune response	1.45E-03
51	GO:0006536: glutamate metabolic process	1.45E-03
52	GO:0055114: oxidation-reduction process	1.48E-03
53	GO:0000304: response to singlet oxygen	1.85E-03
54	GO:0009697: salicylic acid biosynthetic process	1.85E-03
55	GO:0009611: response to wounding	2.01E-03
56	GO:0002238: response to molecule of fungal origin	2.28E-03
57	GO:0006561: proline biosynthetic process	2.28E-03
58	GO:0010256: endomembrane system organization	2.28E-03
59	GO:0010252: auxin homeostasis	2.54E-03
60	GO:0010555: response to mannitol	2.74E-03
61	GO:2000067: regulation of root morphogenesis	2.74E-03
62	GO:0051607: defense response to virus	2.86E-03
63	GO:0030026: cellular manganese ion homeostasis	3.23E-03
64	GO:1900056: negative regulation of leaf senescence	3.23E-03
65	GO:0000338: protein deneddylation	3.23E-03
66	GO:0019745: pentacyclic triterpenoid biosynthetic process	3.23E-03
67	GO:1900150: regulation of defense response to fungus	3.74E-03
68	GO:0009850: auxin metabolic process	3.74E-03
69	GO:0043068: positive regulation of programmed cell death	3.74E-03
70	GO:0006102: isocitrate metabolic process	3.74E-03
71	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.74E-03
72	GO:0008219: cell death	3.94E-03
73	GO:0010497: plasmodesmata-mediated intercellular transport	4.29E-03
74	GO:0022900: electron transport chain	4.29E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	4.29E-03
76	GO:0007166: cell surface receptor signaling pathway	4.59E-03
77	GO:0009821: alkaloid biosynthetic process	4.85E-03
78	GO:0051865: protein autoubiquitination	4.85E-03
79	GO:0010112: regulation of systemic acquired resistance	4.85E-03
80	GO:0015780: nucleotide-sugar transport	4.85E-03
81	GO:0045087: innate immune response	4.99E-03
82	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.44E-03
83	GO:2000280: regulation of root development	5.44E-03
84	GO:0050832: defense response to fungus	5.56E-03
85	GO:0006631: fatty acid metabolic process	5.93E-03
86	GO:0055062: phosphate ion homeostasis	6.06E-03
87	GO:0007064: mitotic sister chromatid cohesion	6.06E-03
88	GO:0006032: chitin catabolic process	6.06E-03
89	GO:0009688: abscisic acid biosynthetic process	6.06E-03
90	GO:0051707: response to other organism	6.43E-03
91	GO:0015770: sucrose transport	6.69E-03
92	GO:0009089: lysine biosynthetic process via diaminopimelate	6.69E-03
93	GO:0009750: response to fructose	6.69E-03
94	GO:0006816: calcium ion transport	6.69E-03
95	GO:0006979: response to oxidative stress	6.75E-03
96	GO:0008643: carbohydrate transport	6.95E-03
97	GO:0002213: defense response to insect	7.36E-03
98	GO:0006790: sulfur compound metabolic process	7.36E-03
99	GO:0012501: programmed cell death	7.36E-03
100	GO:0009718: anthocyanin-containing compound biosynthetic process	8.04E-03
101	GO:0042538: hyperosmotic salinity response	8.07E-03
102	GO:0009737: response to abscisic acid	8.31E-03
103	GO:0010143: cutin biosynthetic process	8.75E-03
104	GO:0080167: response to karrikin	8.86E-03
105	GO:0010200: response to chitin	9.25E-03
106	GO:0070588: calcium ion transmembrane transport	9.48E-03
107	GO:0046854: phosphatidylinositol phosphorylation	9.48E-03
108	GO:0010025: wax biosynthetic process	1.02E-02
109	GO:0009863: salicylic acid mediated signaling pathway	1.10E-02
110	GO:0080147: root hair cell development	1.10E-02
111	GO:0005992: trehalose biosynthetic process	1.10E-02
112	GO:0010073: meristem maintenance	1.18E-02
113	GO:0009624: response to nematode	1.24E-02
114	GO:0016998: cell wall macromolecule catabolic process	1.26E-02
115	GO:0035428: hexose transmembrane transport	1.34E-02
116	GO:0031348: negative regulation of defense response	1.34E-02
117	GO:0019748: secondary metabolic process	1.34E-02
118	GO:0032259: methylation	1.38E-02
119	GO:0009625: response to insect	1.43E-02
120	GO:0009753: response to jasmonic acid	1.59E-02
121	GO:0042147: retrograde transport, endosome to Golgi	1.61E-02
122	GO:0042631: cellular response to water deprivation	1.70E-02
123	GO:0046323: glucose import	1.79E-02
124	GO:0048544: recognition of pollen	1.88E-02
125	GO:0006814: sodium ion transport	1.88E-02
126	GO:0006633: fatty acid biosynthetic process	1.95E-02
127	GO:0009749: response to glucose	1.98E-02
128	GO:0009851: auxin biosynthetic process	1.98E-02
129	GO:0002229: defense response to oomycetes	2.08E-02
130	GO:0010193: response to ozone	2.08E-02
131	GO:0000302: response to reactive oxygen species	2.08E-02
132	GO:0007165: signal transduction	2.35E-02
133	GO:0009615: response to virus	2.70E-02
134	GO:0009816: defense response to bacterium, incompatible interaction	2.81E-02
135	GO:0009607: response to biotic stimulus	2.81E-02
136	GO:0009627: systemic acquired resistance	2.92E-02
137	GO:0009416: response to light stimulus	2.99E-02
138	GO:0016311: dephosphorylation	3.15E-02
139	GO:0006499: N-terminal protein myristoylation	3.50E-02
140	GO:0048527: lateral root development	3.62E-02
141	GO:0007568: aging	3.62E-02
142	GO:0006865: amino acid transport	3.74E-02
143	GO:0006099: tricarboxylic acid cycle	3.99E-02
144	GO:0006897: endocytosis	4.37E-02
145	GO:0009640: photomorphogenesis	4.63E-02
146	GO:0009744: response to sucrose	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.30E-06
5	GO:0010279: indole-3-acetic acid amido synthetase activity	3.23E-05
6	GO:0004674: protein serine/threonine kinase activity	8.12E-05
7	GO:0102391: decanoate--CoA ligase activity	1.06E-04
8	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.06E-04
9	GO:0004467: long-chain fatty acid-CoA ligase activity	1.40E-04
10	GO:0009055: electron carrier activity	1.55E-04
11	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.11E-04
12	GO:0010285: L,L-diaminopimelate aminotransferase activity	2.11E-04
13	GO:0050660: flavin adenine dinucleotide binding	3.09E-04
14	GO:0016301: kinase activity	3.61E-04
15	GO:0008171: O-methyltransferase activity	3.76E-04
16	GO:0042937: tripeptide transporter activity	4.71E-04
17	GO:0004103: choline kinase activity	4.71E-04
18	GO:0004566: beta-glucuronidase activity	4.71E-04
19	GO:0015238: drug transmembrane transporter activity	4.92E-04
20	GO:0015297: antiporter activity	6.30E-04
21	GO:0005217: intracellular ligand-gated ion channel activity	7.14E-04
22	GO:0004970: ionotropic glutamate receptor activity	7.14E-04
23	GO:0031683: G-protein beta/gamma-subunit complex binding	7.67E-04
24	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	7.67E-04
25	GO:0004383: guanylate cyclase activity	7.67E-04
26	GO:0001664: G-protein coupled receptor binding	7.67E-04
27	GO:0004364: glutathione transferase activity	8.15E-04
28	GO:0015181: arginine transmembrane transporter activity	1.09E-03
29	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.09E-03
30	GO:0042299: lupeol synthase activity	1.09E-03
31	GO:0035529: NADH pyrophosphatase activity	1.09E-03
32	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.09E-03
33	GO:0004351: glutamate decarboxylase activity	1.09E-03
34	GO:0015189: L-lysine transmembrane transporter activity	1.09E-03
35	GO:0016866: intramolecular transferase activity	1.45E-03
36	GO:0004031: aldehyde oxidase activity	1.45E-03
37	GO:0050302: indole-3-acetaldehyde oxidase activity	1.45E-03
38	GO:0015368: calcium:cation antiporter activity	1.45E-03
39	GO:0042936: dipeptide transporter activity	1.45E-03
40	GO:0015369: calcium:proton antiporter activity	1.45E-03
41	GO:0005313: L-glutamate transmembrane transporter activity	1.45E-03
42	GO:0047631: ADP-ribose diphosphatase activity	1.85E-03
43	GO:0005459: UDP-galactose transmembrane transporter activity	1.85E-03
44	GO:0015145: monosaccharide transmembrane transporter activity	1.85E-03
45	GO:0000210: NAD+ diphosphatase activity	2.28E-03
46	GO:0005524: ATP binding	2.48E-03
47	GO:0005261: cation channel activity	2.74E-03
48	GO:0004602: glutathione peroxidase activity	2.74E-03
49	GO:0004656: procollagen-proline 4-dioxygenase activity	2.74E-03
50	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.74E-03
51	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.74E-03
52	GO:0008506: sucrose:proton symporter activity	3.23E-03
53	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.23E-03
54	GO:0030247: polysaccharide binding	3.56E-03
55	GO:0015491: cation:cation antiporter activity	3.74E-03
56	GO:0004564: beta-fructofuranosidase activity	3.74E-03
57	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.75E-03
58	GO:0005516: calmodulin binding	3.96E-03
59	GO:0030145: manganese ion binding	4.55E-03
60	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.99E-03
61	GO:0016844: strictosidine synthase activity	5.44E-03
62	GO:0004575: sucrose alpha-glucosidase activity	5.44E-03
63	GO:0015174: basic amino acid transmembrane transporter activity	5.44E-03
64	GO:0004568: chitinase activity	6.06E-03
65	GO:0005506: iron ion binding	6.47E-03
66	GO:0051537: 2 iron, 2 sulfur cluster binding	6.95E-03
67	GO:0051287: NAD binding	7.79E-03
68	GO:0004022: alcohol dehydrogenase (NAD) activity	8.04E-03
69	GO:0005262: calcium channel activity	8.04E-03
70	GO:0005388: calcium-transporting ATPase activity	8.04E-03
71	GO:0004190: aspartic-type endopeptidase activity	9.48E-03
72	GO:0004867: serine-type endopeptidase inhibitor activity	9.48E-03
73	GO:0015171: amino acid transmembrane transporter activity	9.61E-03
74	GO:0045735: nutrient reservoir activity	1.03E-02
75	GO:0031418: L-ascorbic acid binding	1.10E-02
76	GO:0004871: signal transducer activity	1.18E-02
77	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.23E-02
78	GO:0015035: protein disulfide oxidoreductase activity	1.27E-02
79	GO:0022891: substrate-specific transmembrane transporter activity	1.43E-02
80	GO:0030170: pyridoxal phosphate binding	1.72E-02
81	GO:0005355: glucose transmembrane transporter activity	1.88E-02
82	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.00E-02
83	GO:0005509: calcium ion binding	2.00E-02
84	GO:0008237: metallopeptidase activity	2.49E-02
85	GO:0008483: transaminase activity	2.49E-02
86	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.49E-02
87	GO:0005215: transporter activity	2.62E-02
88	GO:0051213: dioxygenase activity	2.70E-02
89	GO:0004683: calmodulin-dependent protein kinase activity	3.04E-02
90	GO:0004222: metalloendopeptidase activity	3.50E-02
91	GO:0004842: ubiquitin-protein transferase activity	3.62E-02
92	GO:0043531: ADP binding	3.64E-02
93	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.99E-02
94	GO:0030246: carbohydrate binding	4.32E-02
95	GO:0046872: metal ion binding	4.40E-02
96	GO:0052689: carboxylic ester hydrolase activity	4.53E-02
97	GO:0019825: oxygen binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	1.32E-06
2	GO:0005886: plasma membrane	1.05E-05
3	GO:0005783: endoplasmic reticulum	2.97E-04
4	GO:0005765: lysosomal membrane	4.36E-04
5	GO:0030660: Golgi-associated vesicle membrane	1.45E-03
6	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.45E-03
7	GO:0005576: extracellular region	1.56E-03
8	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.74E-03
9	GO:0008180: COP9 signalosome	4.85E-03
10	GO:0031090: organelle membrane	4.85E-03
11	GO:0005623: cell	1.59E-02
12	GO:0009705: plant-type vacuole membrane	2.14E-02
13	GO:0046658: anchored component of plasma membrane	2.84E-02
14	GO:0005829: cytosol	2.87E-02
15	GO:0000325: plant-type vacuole	3.62E-02