co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0045014: negative regulation of transcription by glucose	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0090627: plant epidermal cell differentiation	0.00E+00
7	GO:0042493: response to drug	0.00E+00
8	GO:0015979: photosynthesis	3.13E-09
9	GO:0046620: regulation of organ growth	3.12E-08
10	GO:0042254: ribosome biogenesis	2.21E-07
11	GO:0006412: translation	1.52E-06
12	GO:0009733: response to auxin	6.57E-06
13	GO:0009926: auxin polar transport	6.86E-06
14	GO:0010206: photosystem II repair	7.65E-06
15	GO:0051513: regulation of monopolar cell growth	1.93E-05
16	GO:0010207: photosystem II assembly	3.39E-05
17	GO:0015995: chlorophyll biosynthetic process	3.46E-05
18	GO:0009772: photosynthetic electron transport in photosystem II	1.52E-04
19	GO:0034337: RNA folding	2.22E-04
20	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.22E-04
21	GO:0043489: RNA stabilization	2.22E-04
22	GO:0043266: regulation of potassium ion transport	2.22E-04
23	GO:0000481: maturation of 5S rRNA	2.22E-04
24	GO:0042759: long-chain fatty acid biosynthetic process	2.22E-04
25	GO:0042371: vitamin K biosynthetic process	2.22E-04
26	GO:2000021: regulation of ion homeostasis	2.22E-04
27	GO:0032544: plastid translation	2.40E-04
28	GO:0009734: auxin-activated signaling pathway	3.35E-04
29	GO:0010027: thylakoid membrane organization	3.60E-04
30	GO:0009735: response to cytokinin	4.51E-04
31	GO:0009773: photosynthetic electron transport in photosystem I	4.69E-04
32	GO:0010541: acropetal auxin transport	4.95E-04
33	GO:0001736: establishment of planar polarity	4.95E-04
34	GO:0016024: CDP-diacylglycerol biosynthetic process	5.37E-04
35	GO:0006006: glucose metabolic process	6.09E-04
36	GO:0045490: pectin catabolic process	7.59E-04
37	GO:0010160: formation of animal organ boundary	8.05E-04
38	GO:0090391: granum assembly	8.05E-04
39	GO:0006518: peptide metabolic process	8.05E-04
40	GO:0080055: low-affinity nitrate transport	8.05E-04
41	GO:0045493: xylan catabolic process	8.05E-04
42	GO:0071484: cellular response to light intensity	1.15E-03
43	GO:0080170: hydrogen peroxide transmembrane transport	1.15E-03
44	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.15E-03
45	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.15E-03
46	GO:0009650: UV protection	1.15E-03
47	GO:0010306: rhamnogalacturonan II biosynthetic process	1.15E-03
48	GO:1901332: negative regulation of lateral root development	1.15E-03
49	GO:0048443: stamen development	1.46E-03
50	GO:0030104: water homeostasis	1.53E-03
51	GO:0042335: cuticle development	1.71E-03
52	GO:0000413: protein peptidyl-prolyl isomerization	1.71E-03
53	GO:0009958: positive gravitropism	1.84E-03
54	GO:0010236: plastoquinone biosynthetic process	1.95E-03
55	GO:0042549: photosystem II stabilization	2.40E-03
56	GO:0009913: epidermal cell differentiation	2.40E-03
57	GO:0006655: phosphatidylglycerol biosynthetic process	2.40E-03
58	GO:0060918: auxin transport	2.40E-03
59	GO:0006751: glutathione catabolic process	2.40E-03
60	GO:0042372: phylloquinone biosynthetic process	2.89E-03
61	GO:1900056: negative regulation of leaf senescence	3.40E-03
62	GO:0010196: nonphotochemical quenching	3.40E-03
63	GO:1900057: positive regulation of leaf senescence	3.40E-03
64	GO:0016042: lipid catabolic process	3.51E-03
65	GO:0030091: protein repair	3.94E-03
66	GO:0032508: DNA duplex unwinding	3.94E-03
67	GO:0010311: lateral root formation	4.46E-03
68	GO:0009051: pentose-phosphate shunt, oxidative branch	5.11E-03
69	GO:0009245: lipid A biosynthetic process	5.11E-03
70	GO:0048589: developmental growth	5.11E-03
71	GO:0010205: photoinhibition	5.74E-03
72	GO:0030001: metal ion transport	6.13E-03
73	GO:0048829: root cap development	6.38E-03
74	GO:0010015: root morphogenesis	7.06E-03
75	GO:0018119: peptidyl-cysteine S-nitrosylation	7.06E-03
76	GO:0048765: root hair cell differentiation	7.06E-03
77	GO:0009658: chloroplast organization	7.43E-03
78	GO:0008361: regulation of cell size	7.76E-03
79	GO:0010152: pollen maturation	7.76E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	8.48E-03
81	GO:0009664: plant-type cell wall organization	8.71E-03
82	GO:0010540: basipetal auxin transport	9.23E-03
83	GO:0010143: cutin biosynthetic process	9.23E-03
84	GO:0019253: reductive pentose-phosphate cycle	9.23E-03
85	GO:0010030: positive regulation of seed germination	1.00E-02
86	GO:0010025: wax biosynthetic process	1.08E-02
87	GO:0000027: ribosomal large subunit assembly	1.16E-02
88	GO:0009409: response to cold	1.29E-02
89	GO:0048511: rhythmic process	1.33E-02
90	GO:0003333: amino acid transmembrane transport	1.33E-02
91	GO:0009624: response to nematode	1.34E-02
92	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.51E-02
93	GO:0009411: response to UV	1.51E-02
94	GO:0009306: protein secretion	1.60E-02
95	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.70E-02
96	GO:0042631: cellular response to water deprivation	1.79E-02
97	GO:0080022: primary root development	1.79E-02
98	GO:0034220: ion transmembrane transport	1.79E-02
99	GO:0010087: phloem or xylem histogenesis	1.79E-02
100	GO:0010305: leaf vascular tissue pattern formation	1.89E-02
101	GO:0048868: pollen tube development	1.89E-02
102	GO:0009790: embryo development	1.96E-02
103	GO:0015986: ATP synthesis coupled proton transport	1.99E-02
104	GO:0042752: regulation of circadian rhythm	1.99E-02
105	GO:0048825: cotyledon development	2.09E-02
106	GO:0000302: response to reactive oxygen species	2.19E-02
107	GO:0030163: protein catabolic process	2.41E-02
108	GO:0042742: defense response to bacterium	2.52E-02
109	GO:0009639: response to red or far red light	2.52E-02
110	GO:0009828: plant-type cell wall loosening	2.52E-02
111	GO:0009627: systemic acquired resistance	3.09E-02
112	GO:0009793: embryo development ending in seed dormancy	3.19E-02
113	GO:0010411: xyloglucan metabolic process	3.20E-02
114	GO:0009416: response to light stimulus	3.29E-02
115	GO:0009817: defense response to fungus, incompatible interaction	3.45E-02
116	GO:0010218: response to far red light	3.70E-02
117	GO:0007568: aging	3.82E-02
118	GO:0009631: cold acclimation	3.82E-02
119	GO:0048527: lateral root development	3.82E-02
120	GO:0006865: amino acid transport	3.95E-02
121	GO:0045087: innate immune response	4.08E-02
122	GO:0009637: response to blue light	4.08E-02
123	GO:0034599: cellular response to oxidative stress	4.21E-02
124	GO:0080167: response to karrikin	4.42E-02
125	GO:0006631: fatty acid metabolic process	4.61E-02
126	GO:0009640: photomorphogenesis	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
6	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.60E-08
7	GO:0005528: FK506 binding	2.46E-08
8	GO:0016851: magnesium chelatase activity	6.63E-08
9	GO:0003735: structural constituent of ribosome	2.48E-07
10	GO:0019843: rRNA binding	4.20E-06
11	GO:0010011: auxin binding	3.53E-05
12	GO:0030570: pectate lyase activity	1.02E-04
13	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.22E-04
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.22E-04
15	GO:0016788: hydrolase activity, acting on ester bonds	2.81E-04
16	GO:0052689: carboxylic ester hydrolase activity	4.86E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	4.95E-04
18	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.95E-04
19	GO:0016829: lyase activity	5.23E-04
20	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.05E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.05E-04
22	GO:0043023: ribosomal large subunit binding	1.15E-03
23	GO:0008097: 5S rRNA binding	1.15E-03
24	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.53E-03
25	GO:0010328: auxin influx transmembrane transporter activity	1.53E-03
26	GO:0052793: pectin acetylesterase activity	1.53E-03
27	GO:0009044: xylan 1,4-beta-xylosidase activity	1.53E-03
28	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.53E-03
29	GO:0046556: alpha-L-arabinofuranosidase activity	1.53E-03
30	GO:0004659: prenyltransferase activity	1.53E-03
31	GO:0004040: amidase activity	1.95E-03
32	GO:0004130: cytochrome-c peroxidase activity	2.40E-03
33	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.40E-03
34	GO:0031177: phosphopantetheine binding	2.40E-03
35	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.40E-03
36	GO:0016791: phosphatase activity	2.74E-03
37	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.89E-03
38	GO:0004017: adenylate kinase activity	2.89E-03
39	GO:0000035: acyl binding	2.89E-03
40	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.94E-03
41	GO:0008236: serine-type peptidase activity	4.04E-03
42	GO:0050661: NADP binding	6.13E-03
43	GO:0010329: auxin efflux transmembrane transporter activity	8.48E-03
44	GO:0031072: heat shock protein binding	8.48E-03
45	GO:0008266: poly(U) RNA binding	9.23E-03
46	GO:0004707: MAP kinase activity	1.33E-02
47	GO:0016746: transferase activity, transferring acyl groups	1.38E-02
48	GO:0003756: protein disulfide isomerase activity	1.60E-02
49	GO:0004252: serine-type endopeptidase activity	1.86E-02
50	GO:0008080: N-acetyltransferase activity	1.89E-02
51	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.89E-02
52	GO:0015250: water channel activity	2.85E-02
53	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.94E-02
54	GO:0016168: chlorophyll binding	2.97E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.45E-02
56	GO:0005515: protein binding	3.51E-02
57	GO:0005096: GTPase activator activity	3.57E-02
58	GO:0004222: metalloendopeptidase activity	3.70E-02
59	GO:0030145: manganese ion binding	3.82E-02
60	GO:0003746: translation elongation factor activity	4.08E-02
61	GO:0003993: acid phosphatase activity	4.21E-02
62	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.34E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0009570: chloroplast stroma	3.45E-25
5	GO:0009507: chloroplast	1.30E-24
6	GO:0009534: chloroplast thylakoid	1.40E-23
7	GO:0009535: chloroplast thylakoid membrane	2.09E-23
8	GO:0009579: thylakoid	3.46E-22
9	GO:0009543: chloroplast thylakoid lumen	1.84E-21
10	GO:0009941: chloroplast envelope	3.40E-18
11	GO:0031977: thylakoid lumen	1.32E-15
12	GO:0010007: magnesium chelatase complex	1.36E-08
13	GO:0005840: ribosome	6.35E-08
14	GO:0030095: chloroplast photosystem II	7.09E-07
15	GO:0009533: chloroplast stromal thylakoid	1.52E-04
16	GO:0043674: columella	2.22E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.22E-04
18	GO:0009515: granal stacked thylakoid	2.22E-04
19	GO:0009295: nucleoid	3.09E-04
20	GO:0030093: chloroplast photosystem I	4.95E-04
21	GO:0009508: plastid chromosome	6.09E-04
22	GO:0009505: plant-type cell wall	1.00E-03
23	GO:0009654: photosystem II oxygen evolving complex	1.03E-03
24	GO:0009531: secondary cell wall	1.15E-03
25	GO:0016020: membrane	1.99E-03
26	GO:0009523: photosystem II	2.12E-03
27	GO:0019898: extrinsic component of membrane	2.12E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.40E-03
29	GO:0042807: central vacuole	3.40E-03
30	GO:0009986: cell surface	3.40E-03
31	GO:0009538: photosystem I reaction center	3.94E-03
32	GO:0005576: extracellular region	4.23E-03
33	GO:0005618: cell wall	4.50E-03
34	GO:0042644: chloroplast nucleoid	5.11E-03
35	GO:0008180: COP9 signalosome	5.11E-03
36	GO:0032040: small-subunit processome	7.76E-03
37	GO:0031969: chloroplast membrane	9.77E-03
38	GO:0015935: small ribosomal subunit	1.33E-02
39	GO:0009522: photosystem I	1.99E-02
40	GO:0009705: plant-type vacuole membrane	2.31E-02
41	GO:0010319: stromule	2.63E-02
42	GO:0030529: intracellular ribonucleoprotein complex	2.85E-02
43	GO:0019005: SCF ubiquitin ligase complex	3.45E-02