GO Enrichment Analysis of Co-expressed Genes with
AT1G54520
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 7 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 8 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 9 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 10 | GO:0009853: photorespiration | 3.15E-09 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 2.00E-08 |
| 12 | GO:0006810: transport | 1.27E-06 |
| 13 | GO:0006000: fructose metabolic process | 1.89E-06 |
| 14 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.47E-06 |
| 15 | GO:0010196: nonphotochemical quenching | 4.14E-05 |
| 16 | GO:0009704: de-etiolation | 5.40E-05 |
| 17 | GO:0006002: fructose 6-phosphate metabolic process | 6.86E-05 |
| 18 | GO:0071482: cellular response to light stimulus | 6.86E-05 |
| 19 | GO:0080093: regulation of photorespiration | 9.69E-05 |
| 20 | GO:0043609: regulation of carbon utilization | 9.69E-05 |
| 21 | GO:0031998: regulation of fatty acid beta-oxidation | 9.69E-05 |
| 22 | GO:0071277: cellular response to calcium ion | 9.69E-05 |
| 23 | GO:0009443: pyridoxal 5'-phosphate salvage | 9.69E-05 |
| 24 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.44E-04 |
| 25 | GO:0006094: gluconeogenesis | 1.93E-04 |
| 26 | GO:0009767: photosynthetic electron transport chain | 1.93E-04 |
| 27 | GO:0005986: sucrose biosynthetic process | 1.93E-04 |
| 28 | GO:0019253: reductive pentose-phosphate cycle | 2.19E-04 |
| 29 | GO:0097054: L-glutamate biosynthetic process | 2.28E-04 |
| 30 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.28E-04 |
| 31 | GO:0034755: iron ion transmembrane transport | 2.28E-04 |
| 32 | GO:0080005: photosystem stoichiometry adjustment | 2.28E-04 |
| 33 | GO:0009658: chloroplast organization | 2.46E-04 |
| 34 | GO:0061077: chaperone-mediated protein folding | 3.74E-04 |
| 35 | GO:0045910: negative regulation of DNA recombination | 3.80E-04 |
| 36 | GO:0000913: preprophase band assembly | 3.80E-04 |
| 37 | GO:0031022: nuclear migration along microfilament | 3.80E-04 |
| 38 | GO:0016226: iron-sulfur cluster assembly | 4.10E-04 |
| 39 | GO:0009152: purine ribonucleotide biosynthetic process | 5.46E-04 |
| 40 | GO:0046653: tetrahydrofolate metabolic process | 5.46E-04 |
| 41 | GO:0006537: glutamate biosynthetic process | 5.46E-04 |
| 42 | GO:0009800: cinnamic acid biosynthetic process | 5.46E-04 |
| 43 | GO:0010731: protein glutathionylation | 5.46E-04 |
| 44 | GO:0042631: cellular response to water deprivation | 5.67E-04 |
| 45 | GO:0009902: chloroplast relocation | 7.26E-04 |
| 46 | GO:0019676: ammonia assimilation cycle | 7.26E-04 |
| 47 | GO:0019464: glycine decarboxylation via glycine cleavage system | 7.26E-04 |
| 48 | GO:0045727: positive regulation of translation | 7.26E-04 |
| 49 | GO:0006564: L-serine biosynthetic process | 9.17E-04 |
| 50 | GO:0009904: chloroplast accumulation movement | 9.17E-04 |
| 51 | GO:0006097: glyoxylate cycle | 9.17E-04 |
| 52 | GO:0016123: xanthophyll biosynthetic process | 9.17E-04 |
| 53 | GO:0006544: glycine metabolic process | 9.17E-04 |
| 54 | GO:0043097: pyrimidine nucleoside salvage | 9.17E-04 |
| 55 | GO:0055114: oxidation-reduction process | 9.34E-04 |
| 56 | GO:0042742: defense response to bacterium | 9.89E-04 |
| 57 | GO:0010027: thylakoid membrane organization | 1.06E-03 |
| 58 | GO:0006563: L-serine metabolic process | 1.12E-03 |
| 59 | GO:0042549: photosystem II stabilization | 1.12E-03 |
| 60 | GO:0006559: L-phenylalanine catabolic process | 1.12E-03 |
| 61 | GO:0006206: pyrimidine nucleobase metabolic process | 1.12E-03 |
| 62 | GO:0006458: 'de novo' protein folding | 1.34E-03 |
| 63 | GO:0009903: chloroplast avoidance movement | 1.34E-03 |
| 64 | GO:0009854: oxidative photosynthetic carbon pathway | 1.34E-03 |
| 65 | GO:0042026: protein refolding | 1.34E-03 |
| 66 | GO:0009645: response to low light intensity stimulus | 1.57E-03 |
| 67 | GO:0048564: photosystem I assembly | 1.81E-03 |
| 68 | GO:0032544: plastid translation | 2.07E-03 |
| 69 | GO:0017004: cytochrome complex assembly | 2.07E-03 |
| 70 | GO:0090333: regulation of stomatal closure | 2.33E-03 |
| 71 | GO:0006098: pentose-phosphate shunt | 2.33E-03 |
| 72 | GO:0035999: tetrahydrofolate interconversion | 2.61E-03 |
| 73 | GO:0015979: photosynthesis | 2.66E-03 |
| 74 | GO:0006298: mismatch repair | 2.90E-03 |
| 75 | GO:0006879: cellular iron ion homeostasis | 3.20E-03 |
| 76 | GO:0000272: polysaccharide catabolic process | 3.20E-03 |
| 77 | GO:0010628: positive regulation of gene expression | 3.82E-03 |
| 78 | GO:0006108: malate metabolic process | 3.82E-03 |
| 79 | GO:0010207: photosystem II assembly | 4.15E-03 |
| 80 | GO:0090351: seedling development | 4.49E-03 |
| 81 | GO:0009058: biosynthetic process | 5.53E-03 |
| 82 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.55E-03 |
| 83 | GO:0016575: histone deacetylation | 5.55E-03 |
| 84 | GO:0007017: microtubule-based process | 5.55E-03 |
| 85 | GO:0006730: one-carbon metabolic process | 6.31E-03 |
| 86 | GO:0009735: response to cytokinin | 6.79E-03 |
| 87 | GO:0009409: response to cold | 6.93E-03 |
| 88 | GO:0007623: circadian rhythm | 7.24E-03 |
| 89 | GO:0016117: carotenoid biosynthetic process | 7.51E-03 |
| 90 | GO:0009416: response to light stimulus | 7.61E-03 |
| 91 | GO:0005975: carbohydrate metabolic process | 8.24E-03 |
| 92 | GO:0006520: cellular amino acid metabolic process | 8.35E-03 |
| 93 | GO:0010468: regulation of gene expression | 8.64E-03 |
| 94 | GO:0015986: ATP synthesis coupled proton transport | 8.79E-03 |
| 95 | GO:0007018: microtubule-based movement | 8.79E-03 |
| 96 | GO:0006814: sodium ion transport | 8.79E-03 |
| 97 | GO:0019252: starch biosynthetic process | 9.23E-03 |
| 98 | GO:0016032: viral process | 1.01E-02 |
| 99 | GO:0000910: cytokinesis | 1.20E-02 |
| 100 | GO:0001666: response to hypoxia | 1.25E-02 |
| 101 | GO:0042128: nitrate assimilation | 1.36E-02 |
| 102 | GO:0080167: response to karrikin | 1.39E-02 |
| 103 | GO:0046777: protein autophosphorylation | 1.49E-02 |
| 104 | GO:0030244: cellulose biosynthetic process | 1.51E-02 |
| 105 | GO:0018298: protein-chromophore linkage | 1.51E-02 |
| 106 | GO:0009817: defense response to fungus, incompatible interaction | 1.51E-02 |
| 107 | GO:0006499: N-terminal protein myristoylation | 1.62E-02 |
| 108 | GO:0045454: cell redox homeostasis | 1.67E-02 |
| 109 | GO:0016051: carbohydrate biosynthetic process | 1.79E-02 |
| 110 | GO:0006099: tricarboxylic acid cycle | 1.85E-02 |
| 111 | GO:0032259: methylation | 1.97E-02 |
| 112 | GO:0009744: response to sucrose | 2.14E-02 |
| 113 | GO:0009644: response to high light intensity | 2.27E-02 |
| 114 | GO:0009636: response to toxic substance | 2.33E-02 |
| 115 | GO:0006855: drug transmembrane transport | 2.39E-02 |
| 116 | GO:0009664: plant-type cell wall organization | 2.52E-02 |
| 117 | GO:0006364: rRNA processing | 2.65E-02 |
| 118 | GO:0006417: regulation of translation | 2.85E-02 |
| 119 | GO:0006096: glycolytic process | 2.99E-02 |
| 120 | GO:0009626: plant-type hypersensitive response | 3.12E-02 |
| 121 | GO:0046686: response to cadmium ion | 3.24E-02 |
| 122 | GO:0018105: peptidyl-serine phosphorylation | 3.48E-02 |
| 123 | GO:0009611: response to wounding | 3.73E-02 |
| 124 | GO:0055085: transmembrane transport | 4.62E-02 |
| 125 | GO:0006413: translational initiation | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 2 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 3 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 4 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 5 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 6 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 7 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 8 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 9 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 10 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 11 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 12 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 13 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 14 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 15 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 16 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.50E-06 |
| 17 | GO:0005528: FK506 binding | 8.96E-06 |
| 18 | GO:0004033: aldo-keto reductase (NADP) activity | 5.40E-05 |
| 19 | GO:0016041: glutamate synthase (ferredoxin) activity | 9.69E-05 |
| 20 | GO:0009496: plastoquinol--plastocyanin reductase activity | 9.69E-05 |
| 21 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 9.69E-05 |
| 22 | GO:0008266: poly(U) RNA binding | 2.19E-04 |
| 23 | GO:0010291: carotene beta-ring hydroxylase activity | 2.28E-04 |
| 24 | GO:0010297: heteropolysaccharide binding | 2.28E-04 |
| 25 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.28E-04 |
| 26 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.28E-04 |
| 27 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.28E-04 |
| 28 | GO:0008967: phosphoglycolate phosphatase activity | 2.28E-04 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.64E-04 |
| 30 | GO:0051536: iron-sulfur cluster binding | 3.08E-04 |
| 31 | GO:0050307: sucrose-phosphate phosphatase activity | 3.80E-04 |
| 32 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 3.80E-04 |
| 33 | GO:0070402: NADPH binding | 3.80E-04 |
| 34 | GO:0008864: formyltetrahydrofolate deformylase activity | 3.80E-04 |
| 35 | GO:0045548: phenylalanine ammonia-lyase activity | 3.80E-04 |
| 36 | GO:0032947: protein complex scaffold | 3.80E-04 |
| 37 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.80E-04 |
| 38 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 3.80E-04 |
| 39 | GO:0048487: beta-tubulin binding | 5.46E-04 |
| 40 | GO:0008508: bile acid:sodium symporter activity | 5.46E-04 |
| 41 | GO:0008453: alanine-glyoxylate transaminase activity | 7.26E-04 |
| 42 | GO:0048038: quinone binding | 7.47E-04 |
| 43 | GO:0051538: 3 iron, 4 sulfur cluster binding | 9.17E-04 |
| 44 | GO:0004372: glycine hydroxymethyltransferase activity | 9.17E-04 |
| 45 | GO:0016615: malate dehydrogenase activity | 1.12E-03 |
| 46 | GO:2001070: starch binding | 1.12E-03 |
| 47 | GO:0030983: mismatched DNA binding | 1.12E-03 |
| 48 | GO:0004332: fructose-bisphosphate aldolase activity | 1.12E-03 |
| 49 | GO:0042578: phosphoric ester hydrolase activity | 1.12E-03 |
| 50 | GO:0016168: chlorophyll binding | 1.12E-03 |
| 51 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.34E-03 |
| 52 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.34E-03 |
| 53 | GO:0030060: L-malate dehydrogenase activity | 1.34E-03 |
| 54 | GO:0004849: uridine kinase activity | 1.34E-03 |
| 55 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.07E-03 |
| 56 | GO:0015078: hydrogen ion transmembrane transporter activity | 2.07E-03 |
| 57 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.39E-03 |
| 58 | GO:0005198: structural molecule activity | 2.48E-03 |
| 59 | GO:0005381: iron ion transmembrane transporter activity | 2.61E-03 |
| 60 | GO:0051287: NAD binding | 2.67E-03 |
| 61 | GO:0044183: protein binding involved in protein folding | 3.20E-03 |
| 62 | GO:0015386: potassium:proton antiporter activity | 3.20E-03 |
| 63 | GO:0003777: microtubule motor activity | 3.28E-03 |
| 64 | GO:0004022: alcohol dehydrogenase (NAD) activity | 3.82E-03 |
| 65 | GO:0031072: heat shock protein binding | 3.82E-03 |
| 66 | GO:0051082: unfolded protein binding | 4.20E-03 |
| 67 | GO:0031409: pigment binding | 4.83E-03 |
| 68 | GO:0004407: histone deacetylase activity | 5.19E-03 |
| 69 | GO:0043424: protein histidine kinase binding | 5.55E-03 |
| 70 | GO:0015079: potassium ion transmembrane transporter activity | 5.55E-03 |
| 71 | GO:0022891: substrate-specific transmembrane transporter activity | 6.70E-03 |
| 72 | GO:0003756: protein disulfide isomerase activity | 7.10E-03 |
| 73 | GO:0050662: coenzyme binding | 8.79E-03 |
| 74 | GO:0008168: methyltransferase activity | 1.08E-02 |
| 75 | GO:0003684: damaged DNA binding | 1.11E-02 |
| 76 | GO:0016597: amino acid binding | 1.20E-02 |
| 77 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.36E-02 |
| 78 | GO:0004683: calmodulin-dependent protein kinase activity | 1.41E-02 |
| 79 | GO:0004721: phosphoprotein phosphatase activity | 1.41E-02 |
| 80 | GO:0015238: drug transmembrane transporter activity | 1.57E-02 |
| 81 | GO:0005509: calcium ion binding | 1.68E-02 |
| 82 | GO:0050897: cobalt ion binding | 1.68E-02 |
| 83 | GO:0005524: ATP binding | 1.94E-02 |
| 84 | GO:0004364: glutathione transferase activity | 2.08E-02 |
| 85 | GO:0003824: catalytic activity | 2.10E-02 |
| 86 | GO:0005215: transporter activity | 2.12E-02 |
| 87 | GO:0043621: protein self-association | 2.27E-02 |
| 88 | GO:0016887: ATPase activity | 3.19E-02 |
| 89 | GO:0016874: ligase activity | 3.26E-02 |
| 90 | GO:0019843: rRNA binding | 4.00E-02 |
| 91 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.07E-02 |
| 92 | GO:0030170: pyridoxal phosphate binding | 4.30E-02 |
| 93 | GO:0046872: metal ion binding | 4.70E-02 |
| 94 | GO:0016787: hydrolase activity | 4.79E-02 |
| 95 | GO:0015297: antiporter activity | 4.86E-02 |
| 96 | GO:0030246: carbohydrate binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 6.53E-33 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 3.55E-23 |
| 4 | GO:0009941: chloroplast envelope | 1.06E-19 |
| 5 | GO:0009534: chloroplast thylakoid | 1.43E-16 |
| 6 | GO:0009570: chloroplast stroma | 2.21E-12 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.47E-11 |
| 8 | GO:0009579: thylakoid | 1.41E-09 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 1.22E-07 |
| 10 | GO:0048046: apoplast | 6.22E-06 |
| 11 | GO:0016020: membrane | 4.33E-05 |
| 12 | GO:0010287: plastoglobule | 5.85E-05 |
| 13 | GO:0010319: stromule | 5.99E-05 |
| 14 | GO:0009344: nitrite reductase complex [NAD(P)H] | 9.69E-05 |
| 15 | GO:0009782: photosystem I antenna complex | 9.69E-05 |
| 16 | GO:0005759: mitochondrial matrix | 9.85E-05 |
| 17 | GO:0030095: chloroplast photosystem II | 2.19E-04 |
| 18 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.28E-04 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 3.41E-04 |
| 20 | GO:0031969: chloroplast membrane | 3.48E-04 |
| 21 | GO:0009523: photosystem II | 6.99E-04 |
| 22 | GO:0019898: extrinsic component of membrane | 6.99E-04 |
| 23 | GO:0030286: dynein complex | 7.26E-04 |
| 24 | GO:0009517: PSII associated light-harvesting complex II | 7.26E-04 |
| 25 | GO:0009512: cytochrome b6f complex | 9.17E-04 |
| 26 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 1.12E-03 |
| 27 | GO:0005777: peroxisome | 1.85E-03 |
| 28 | GO:0009508: plastid chromosome | 3.82E-03 |
| 29 | GO:0030076: light-harvesting complex | 4.49E-03 |
| 30 | GO:0005875: microtubule associated complex | 4.83E-03 |
| 31 | GO:0005623: cell | 5.39E-03 |
| 32 | GO:0005871: kinesin complex | 7.51E-03 |
| 33 | GO:0009504: cell plate | 9.23E-03 |
| 34 | GO:0005694: chromosome | 1.01E-02 |
| 35 | GO:0009295: nucleoid | 1.16E-02 |
| 36 | GO:0009707: chloroplast outer membrane | 1.51E-02 |
| 37 | GO:0005819: spindle | 1.91E-02 |
| 38 | GO:0031977: thylakoid lumen | 2.02E-02 |
| 39 | GO:0005747: mitochondrial respiratory chain complex I | 3.05E-02 |
| 40 | GO:0005829: cytosol | 3.21E-02 |
| 41 | GO:0009706: chloroplast inner membrane | 3.41E-02 |
| 42 | GO:0009524: phragmoplast | 4.15E-02 |