Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G54350

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0045176: apical protein localization0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
12GO:0019284: L-methionine salvage from S-adenosylmethionine0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0009773: photosynthetic electron transport in photosystem I2.80E-11
15GO:0006000: fructose metabolic process1.60E-08
16GO:0032544: plastid translation6.44E-08
17GO:0015979: photosynthesis7.82E-08
18GO:0010027: thylakoid membrane organization1.17E-06
19GO:0030388: fructose 1,6-bisphosphate metabolic process2.61E-06
20GO:0006002: fructose 6-phosphate metabolic process6.34E-06
21GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.15E-05
22GO:0005983: starch catabolic process2.57E-05
23GO:0006094: gluconeogenesis3.19E-05
24GO:0045727: positive regulation of translation3.91E-05
25GO:0009853: photorespiration7.85E-05
26GO:0042549: photosystem II stabilization9.17E-05
27GO:0010019: chloroplast-nucleus signaling pathway1.27E-04
28GO:0006810: transport1.36E-04
29GO:0009416: response to light stimulus1.40E-04
30GO:0010196: nonphotochemical quenching1.67E-04
31GO:0009704: de-etiolation2.12E-04
32GO:0009443: pyridoxal 5'-phosphate salvage2.36E-04
33GO:0043953: protein transport by the Tat complex2.36E-04
34GO:0071277: cellular response to calcium ion2.36E-04
35GO:0000481: maturation of 5S rRNA2.36E-04
36GO:0065002: intracellular protein transmembrane transport2.36E-04
37GO:0006106: fumarate metabolic process2.36E-04
38GO:0043609: regulation of carbon utilization2.36E-04
39GO:0034337: RNA folding2.36E-04
40GO:0071588: hydrogen peroxide mediated signaling pathway2.36E-04
41GO:0000023: maltose metabolic process2.36E-04
42GO:0009657: plastid organization2.63E-04
43GO:0071482: cellular response to light stimulus2.63E-04
44GO:0009658: chloroplast organization3.20E-04
45GO:0015995: chlorophyll biosynthetic process4.98E-04
46GO:0006415: translational termination5.11E-04
47GO:0009629: response to gravity5.24E-04
48GO:0080005: photosystem stoichiometry adjustment5.24E-04
49GO:0034755: iron ion transmembrane transport5.24E-04
50GO:0007154: cell communication5.24E-04
51GO:0009662: etioplast organization5.24E-04
52GO:0097054: L-glutamate biosynthetic process5.24E-04
53GO:0010270: photosystem II oxygen evolving complex assembly5.24E-04
54GO:0009767: photosynthetic electron transport chain6.63E-04
55GO:0005986: sucrose biosynthetic process6.63E-04
56GO:0010207: photosystem II assembly7.46E-04
57GO:0006518: peptide metabolic process8.52E-04
58GO:0051604: protein maturation8.52E-04
59GO:0009768: photosynthesis, light harvesting in photosystem I1.12E-03
60GO:0006537: glutamate biosynthetic process1.21E-03
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.21E-03
62GO:0010731: protein glutathionylation1.21E-03
63GO:0016556: mRNA modification1.21E-03
64GO:2001141: regulation of RNA biosynthetic process1.21E-03
65GO:0009152: purine ribonucleotide biosynthetic process1.21E-03
66GO:0046653: tetrahydrofolate metabolic process1.21E-03
67GO:0061077: chaperone-mediated protein folding1.23E-03
68GO:0006364: rRNA processing1.52E-03
69GO:0015994: chlorophyll metabolic process1.62E-03
70GO:0010021: amylopectin biosynthetic process1.62E-03
71GO:0010109: regulation of photosynthesis1.62E-03
72GO:0019676: ammonia assimilation cycle1.62E-03
73GO:0019464: glycine decarboxylation via glycine cleavage system1.62E-03
74GO:0009247: glycolipid biosynthetic process2.07E-03
75GO:0006544: glycine metabolic process2.07E-03
76GO:0006564: L-serine biosynthetic process2.07E-03
77GO:0006461: protein complex assembly2.07E-03
78GO:0009735: response to cytokinin2.20E-03
79GO:0019252: starch biosynthetic process2.31E-03
80GO:0009913: epidermal cell differentiation2.55E-03
81GO:0006828: manganese ion transport2.55E-03
82GO:0010190: cytochrome b6f complex assembly2.55E-03
83GO:0006563: L-serine metabolic process2.55E-03
84GO:0048827: phyllome development2.55E-03
85GO:0042026: protein refolding3.06E-03
86GO:0006458: 'de novo' protein folding3.06E-03
87GO:0019509: L-methionine salvage from methylthioadenosine3.06E-03
88GO:0009645: response to low light intensity stimulus3.61E-03
89GO:0042128: nitrate assimilation3.97E-03
90GO:0008610: lipid biosynthetic process4.19E-03
91GO:0019375: galactolipid biosynthetic process4.19E-03
92GO:0032508: DNA duplex unwinding4.19E-03
93GO:0010492: maintenance of shoot apical meristem identity4.19E-03
94GO:0018298: protein-chromophore linkage4.64E-03
95GO:0009409: response to cold4.73E-03
96GO:0017004: cytochrome complex assembly4.79E-03
97GO:0009631: cold acclimation5.36E-03
98GO:0006098: pentose-phosphate shunt5.43E-03
99GO:0010206: photosystem II repair5.43E-03
100GO:0048507: meristem development5.43E-03
101GO:0090333: regulation of stomatal closure5.43E-03
102GO:0009637: response to blue light5.87E-03
103GO:0035999: tetrahydrofolate interconversion6.09E-03
104GO:1900865: chloroplast RNA modification6.09E-03
105GO:0006779: porphyrin-containing compound biosynthetic process6.09E-03
106GO:0006782: protoporphyrinogen IX biosynthetic process6.78E-03
107GO:0045036: protein targeting to chloroplast6.78E-03
108GO:0006816: calcium ion transport7.50E-03
109GO:0009073: aromatic amino acid family biosynthetic process7.50E-03
110GO:0006879: cellular iron ion homeostasis7.50E-03
111GO:0006352: DNA-templated transcription, initiation7.50E-03
112GO:0000272: polysaccharide catabolic process7.50E-03
113GO:0009750: response to fructose7.50E-03
114GO:0018119: peptidyl-cysteine S-nitrosylation7.50E-03
115GO:0000038: very long-chain fatty acid metabolic process7.50E-03
116GO:0010114: response to red light7.57E-03
117GO:0009636: response to toxic substance8.51E-03
118GO:0006855: drug transmembrane transport8.84E-03
119GO:0010628: positive regulation of gene expression9.02E-03
120GO:0006108: malate metabolic process9.02E-03
121GO:0010229: inflorescence development9.02E-03
122GO:0019253: reductive pentose-phosphate cycle9.82E-03
123GO:0010540: basipetal auxin transport9.82E-03
124GO:0006813: potassium ion transport1.02E-02
125GO:0005985: sucrose metabolic process1.06E-02
126GO:0090351: seedling development1.06E-02
127GO:0019762: glucosinolate catabolic process1.15E-02
128GO:0016575: histone deacetylation1.32E-02
129GO:0045454: cell redox homeostasis1.37E-02
130GO:0016226: iron-sulfur cluster assembly1.51E-02
131GO:0035428: hexose transmembrane transport1.51E-02
132GO:0006730: one-carbon metabolic process1.51E-02
133GO:0032259: methylation1.70E-02
134GO:0016117: carotenoid biosynthetic process1.80E-02
135GO:0005975: carbohydrate metabolic process1.82E-02
136GO:0042335: cuticle development1.91E-02
137GO:0042631: cellular response to water deprivation1.91E-02
138GO:0046323: glucose import2.01E-02
139GO:0008152: metabolic process2.03E-02
140GO:0006814: sodium ion transport2.12E-02
141GO:0009791: post-embryonic development2.23E-02
142GO:0048825: cotyledon development2.23E-02
143GO:0080156: mitochondrial mRNA modification2.34E-02
144GO:0000302: response to reactive oxygen species2.34E-02
145GO:0006413: translational initiation2.36E-02
146GO:0016032: viral process2.45E-02
147GO:0007623: circadian rhythm2.53E-02
148GO:0009567: double fertilization forming a zygote and endosperm2.68E-02
149GO:0071805: potassium ion transmembrane transport2.80E-02
150GO:0010468: regulation of gene expression3.02E-02
151GO:0001666: response to hypoxia3.04E-02
152GO:0009911: positive regulation of flower development3.04E-02
153GO:0009816: defense response to bacterium, incompatible interaction3.16E-02
154GO:0016311: dephosphorylation3.54E-02
155GO:0009817: defense response to fungus, incompatible interaction3.67E-02
156GO:0030244: cellulose biosynthetic process3.67E-02
157GO:0006499: N-terminal protein myristoylation3.93E-02
158GO:0009407: toxin catabolic process3.93E-02
159GO:0010218: response to far red light3.93E-02
160GO:0042254: ribosome biogenesis3.98E-02
161GO:0045893: positive regulation of transcription, DNA-templated4.34E-02
162GO:0034599: cellular response to oxidative stress4.48E-02
163GO:0006099: tricarboxylic acid cycle4.48E-02
164GO:0080167: response to karrikin4.82E-02
RankGO TermAdjusted P value
1GO:0005363: maltose transmembrane transporter activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0010303: limit dextrinase activity0.00E+00
4GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0046570: methylthioribulose 1-phosphate dehydratase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0043874: acireductone synthase activity0.00E+00
10GO:0042903: tubulin deacetylase activity0.00E+00
11GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
12GO:0051060: pullulanase activity0.00E+00
13GO:0043014: alpha-tubulin binding0.00E+00
14GO:0046408: chlorophyll synthetase activity0.00E+00
15GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
18GO:0046608: carotenoid isomerase activity0.00E+00
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.61E-06
20GO:0004033: aldo-keto reductase (NADP) activity4.36E-06
21GO:0016149: translation release factor activity, codon specific2.15E-05
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.91E-05
23GO:0005528: FK506 binding6.57E-05
24GO:0004856: xylulokinase activity2.36E-04
25GO:0009496: plastoquinol--plastocyanin reductase activity2.36E-04
26GO:0003867: 4-aminobutyrate transaminase activity2.36E-04
27GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.36E-04
28GO:0070006: metalloaminopeptidase activity2.36E-04
29GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.36E-04
30GO:0016041: glutamate synthase (ferredoxin) activity2.36E-04
31GO:0030941: chloroplast targeting sequence binding2.36E-04
32GO:0004333: fumarate hydratase activity2.36E-04
33GO:0003747: translation release factor activity3.18E-04
34GO:0016630: protochlorophyllide reductase activity5.24E-04
35GO:0008967: phosphoglycolate phosphatase activity5.24E-04
36GO:0047746: chlorophyllase activity5.24E-04
37GO:0010297: heteropolysaccharide binding5.24E-04
38GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.24E-04
39GO:0009977: proton motive force dependent protein transmembrane transporter activity5.24E-04
40GO:0004617: phosphoglycerate dehydrogenase activity5.24E-04
41GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.24E-04
42GO:0033201: alpha-1,4-glucan synthase activity5.24E-04
43GO:0019843: rRNA binding5.30E-04
44GO:0008266: poly(U) RNA binding7.46E-04
45GO:0004373: glycogen (starch) synthase activity8.52E-04
46GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity8.52E-04
47GO:0004148: dihydrolipoyl dehydrogenase activity8.52E-04
48GO:0004751: ribose-5-phosphate isomerase activity8.52E-04
49GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.52E-04
50GO:0070402: NADPH binding8.52E-04
51GO:0008864: formyltetrahydrofolate deformylase activity8.52E-04
52GO:0031409: pigment binding9.25E-04
53GO:0015079: potassium ion transmembrane transporter activity1.12E-03
54GO:0035250: UDP-galactosyltransferase activity1.21E-03
55GO:0048487: beta-tubulin binding1.21E-03
56GO:0008508: bile acid:sodium symporter activity1.21E-03
57GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.27E-03
58GO:0016987: sigma factor activity1.62E-03
59GO:0009011: starch synthase activity1.62E-03
60GO:0001053: plastid sigma factor activity1.62E-03
61GO:0051861: glycolipid binding1.62E-03
62GO:0004372: glycine hydroxymethyltransferase activity2.07E-03
63GO:0003959: NADPH dehydrogenase activity2.07E-03
64GO:0016773: phosphotransferase activity, alcohol group as acceptor2.07E-03
65GO:0051538: 3 iron, 4 sulfur cluster binding2.07E-03
66GO:0050662: coenzyme binding2.15E-03
67GO:0048038: quinone binding2.47E-03
68GO:0004130: cytochrome-c peroxidase activity2.55E-03
69GO:0004556: alpha-amylase activity2.55E-03
70GO:0016688: L-ascorbate peroxidase activity2.55E-03
71GO:2001070: starch binding2.55E-03
72GO:0004332: fructose-bisphosphate aldolase activity2.55E-03
73GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.06E-03
74GO:0016168: chlorophyll binding3.76E-03
75GO:0016787: hydrolase activity3.92E-03
76GO:0043022: ribosome binding4.19E-03
77GO:0008236: serine-type peptidase activity4.41E-03
78GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.79E-03
79GO:0015238: drug transmembrane transporter activity4.87E-03
80GO:0004222: metalloendopeptidase activity5.11E-03
81GO:0005381: iron ion transmembrane transporter activity6.09E-03
82GO:0005384: manganese ion transmembrane transporter activity6.09E-03
83GO:0030234: enzyme regulator activity6.78E-03
84GO:0004364: glutathione transferase activity7.27E-03
85GO:0015386: potassium:proton antiporter activity7.50E-03
86GO:0004177: aminopeptidase activity7.50E-03
87GO:0044183: protein binding involved in protein folding7.50E-03
88GO:0008168: methyltransferase activity7.91E-03
89GO:0051537: 2 iron, 2 sulfur cluster binding8.19E-03
90GO:0004565: beta-galactosidase activity9.02E-03
91GO:0004022: alcohol dehydrogenase (NAD) activity9.02E-03
92GO:0015095: magnesium ion transmembrane transporter activity9.02E-03
93GO:0031072: heat shock protein binding9.02E-03
94GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.15E-02
95GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.15E-02
96GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.15E-02
97GO:0051536: iron-sulfur cluster binding1.24E-02
98GO:0004407: histone deacetylase activity1.24E-02
99GO:0008324: cation transmembrane transporter activity1.32E-02
100GO:0016874: ligase activity1.37E-02
101GO:0051082: unfolded protein binding1.46E-02
102GO:0004519: endonuclease activity1.99E-02
103GO:0005355: glucose transmembrane transporter activity2.12E-02
104GO:0015297: antiporter activity2.41E-02
105GO:0008237: metallopeptidase activity2.80E-02
106GO:0016597: amino acid binding2.92E-02
107GO:0003743: translation initiation factor activity2.95E-02
108GO:0003824: catalytic activity3.29E-02
109GO:0005215: transporter activity3.33E-02
110GO:0004721: phosphoprotein phosphatase activity3.41E-02
111GO:0000287: magnesium ion binding3.83E-02
112GO:0050897: cobalt ion binding4.07E-02
113GO:0004712: protein serine/threonine/tyrosine kinase activity4.62E-02
114GO:0008233: peptidase activity4.74E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009507: chloroplast3.59E-61
5GO:0009535: chloroplast thylakoid membrane3.17E-36
6GO:0009941: chloroplast envelope4.97E-28
7GO:0009570: chloroplast stroma2.12E-23
8GO:0009534: chloroplast thylakoid1.01E-21
9GO:0009579: thylakoid2.28E-11
10GO:0009543: chloroplast thylakoid lumen5.39E-10
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.83E-10
12GO:0031969: chloroplast membrane2.51E-09
13GO:0031977: thylakoid lumen6.94E-06
14GO:0030095: chloroplast photosystem II3.89E-05
15GO:0010287: plastoglobule6.03E-05
16GO:0009654: photosystem II oxygen evolving complex7.67E-05
17GO:0019898: extrinsic component of membrane2.24E-04
18GO:0009782: photosystem I antenna complex2.36E-04
19GO:0009344: nitrite reductase complex [NAD(P)H]2.36E-04
20GO:0045239: tricarboxylic acid cycle enzyme complex2.36E-04
21GO:0031361: integral component of thylakoid membrane2.36E-04
22GO:0010319: stromule3.46E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex5.24E-04
24GO:0005759: mitochondrial matrix7.51E-04
25GO:0030076: light-harvesting complex8.34E-04
26GO:0033281: TAT protein transport complex8.52E-04
27GO:0042651: thylakoid membrane1.12E-03
28GO:0009526: plastid envelope1.62E-03
29GO:0048046: apoplast1.62E-03
30GO:0055035: plastid thylakoid membrane2.07E-03
31GO:0009512: cytochrome b6f complex2.07E-03
32GO:0009523: photosystem II2.31E-03
33GO:0009706: chloroplast inner membrane2.38E-03
34GO:0016020: membrane2.90E-03
35GO:0016021: integral component of membrane3.41E-03
36GO:0031359: integral component of chloroplast outer membrane3.61E-03
37GO:0009533: chloroplast stromal thylakoid3.61E-03
38GO:0009501: amyloplast4.19E-03
39GO:0009707: chloroplast outer membrane4.64E-03
40GO:0032040: small-subunit processome8.25E-03
41GO:0009536: plastid1.26E-02
42GO:0005770: late endosome2.01E-02
43GO:0009522: photosystem I2.12E-02
44GO:0005840: ribosome3.08E-02
45GO:0015934: large ribosomal subunit4.07E-02
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Gene type



Gene DE type