co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54320

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080056: petal vascular tissue pattern formation	0.00E+00
2	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
3	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
4	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
5	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
6	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
7	GO:0000187: activation of MAPK activity	5.42E-06
8	GO:2000037: regulation of stomatal complex patterning	3.64E-05
9	GO:0048482: plant ovule morphogenesis	1.08E-04
10	GO:0010365: positive regulation of ethylene biosynthetic process	1.08E-04
11	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.08E-04
12	GO:0019673: GDP-mannose metabolic process	1.08E-04
13	GO:0031338: regulation of vesicle fusion	1.08E-04
14	GO:0010229: inflorescence development	2.25E-04
15	GO:0006024: glycosaminoglycan biosynthetic process	2.52E-04
16	GO:0050684: regulation of mRNA processing	2.52E-04
17	GO:0019374: galactolipid metabolic process	2.52E-04
18	GO:0007584: response to nutrient	2.52E-04
19	GO:0030010: establishment of cell polarity	2.52E-04
20	GO:0015012: heparan sulfate proteoglycan biosynthetic process	2.52E-04
21	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.19E-04
22	GO:2000034: regulation of seed maturation	4.19E-04
23	GO:0032784: regulation of DNA-templated transcription, elongation	4.19E-04
24	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.19E-04
25	GO:0042780: tRNA 3'-end processing	4.19E-04
26	GO:0090630: activation of GTPase activity	4.19E-04
27	GO:0046621: negative regulation of organ growth	4.19E-04
28	GO:0009814: defense response, incompatible interaction	4.74E-04
29	GO:0010227: floral organ abscission	5.16E-04
30	GO:2001289: lipid X metabolic process	6.01E-04
31	GO:0072334: UDP-galactose transmembrane transport	6.01E-04
32	GO:0019048: modulation by virus of host morphology or physiology	6.01E-04
33	GO:0051601: exocyst localization	6.01E-04
34	GO:0006882: cellular zinc ion homeostasis	6.01E-04
35	GO:0006886: intracellular protein transport	6.08E-04
36	GO:0006468: protein phosphorylation	6.27E-04
37	GO:0033320: UDP-D-xylose biosynthetic process	7.98E-04
38	GO:0006370: 7-methylguanosine mRNA capping	7.98E-04
39	GO:0010107: potassium ion import	7.98E-04
40	GO:2000038: regulation of stomatal complex development	7.98E-04
41	GO:0006090: pyruvate metabolic process	1.01E-03
42	GO:0042732: D-xylose metabolic process	1.23E-03
43	GO:0048317: seed morphogenesis	1.23E-03
44	GO:0006014: D-ribose metabolic process	1.23E-03
45	GO:0019509: L-methionine salvage from methylthioadenosine	1.47E-03
46	GO:0033962: cytoplasmic mRNA processing body assembly	1.47E-03
47	GO:0010044: response to aluminum ion	1.73E-03
48	GO:0006401: RNA catabolic process	1.73E-03
49	GO:0006644: phospholipid metabolic process	2.00E-03
50	GO:0006875: cellular metal ion homeostasis	2.00E-03
51	GO:0032875: regulation of DNA endoreduplication	2.00E-03
52	GO:0006102: isocitrate metabolic process	2.00E-03
53	GO:0009880: embryonic pattern specification	2.28E-03
54	GO:0060321: acceptance of pollen	2.28E-03
55	GO:0006261: DNA-dependent DNA replication	2.28E-03
56	GO:0009051: pentose-phosphate shunt, oxidative branch	2.57E-03
57	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.57E-03
58	GO:0042761: very long-chain fatty acid biosynthetic process	2.88E-03
59	GO:0008202: steroid metabolic process	2.88E-03
60	GO:0071577: zinc II ion transmembrane transport	2.88E-03
61	GO:0044550: secondary metabolite biosynthetic process	3.01E-03
62	GO:0000165: MAPK cascade	3.08E-03
63	GO:0043069: negative regulation of programmed cell death	3.20E-03
64	GO:0006486: protein glycosylation	3.43E-03
65	GO:0006913: nucleocytoplasmic transport	3.53E-03
66	GO:0030148: sphingolipid biosynthetic process	3.53E-03
67	GO:0045037: protein import into chloroplast stroma	3.87E-03
68	GO:0010588: cotyledon vascular tissue pattern formation	4.23E-03
69	GO:0006108: malate metabolic process	4.23E-03
70	GO:0009626: plant-type hypersensitive response	4.31E-03
71	GO:0009225: nucleotide-sugar metabolic process	4.96E-03
72	GO:0042343: indole glucosinolate metabolic process	4.96E-03
73	GO:0071732: cellular response to nitric oxide	4.96E-03
74	GO:0010030: positive regulation of seed germination	4.96E-03
75	GO:0010053: root epidermal cell differentiation	4.96E-03
76	GO:0009742: brassinosteroid mediated signaling pathway	5.15E-03
77	GO:0006825: copper ion transport	6.15E-03
78	GO:0098542: defense response to other organism	6.56E-03
79	GO:0061077: chaperone-mediated protein folding	6.56E-03
80	GO:0051260: protein homooligomerization	6.56E-03
81	GO:0030433: ubiquitin-dependent ERAD pathway	6.99E-03
82	GO:0080092: regulation of pollen tube growth	6.99E-03
83	GO:0071369: cellular response to ethylene stimulus	7.42E-03
84	GO:0051028: mRNA transport	8.32E-03
85	GO:0010118: stomatal movement	8.79E-03
86	GO:0010501: RNA secondary structure unwinding	8.79E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	8.79E-03
88	GO:0010305: leaf vascular tissue pattern formation	9.26E-03
89	GO:0007166: cell surface receptor signaling pathway	9.60E-03
90	GO:0006814: sodium ion transport	9.74E-03
91	GO:0006623: protein targeting to vacuole	1.02E-02
92	GO:0010183: pollen tube guidance	1.02E-02
93	GO:0019252: starch biosynthetic process	1.02E-02
94	GO:0002229: defense response to oomycetes	1.07E-02
95	GO:0046686: response to cadmium ion	1.07E-02
96	GO:0016032: viral process	1.12E-02
97	GO:0071281: cellular response to iron ion	1.18E-02
98	GO:0009826: unidimensional cell growth	1.25E-02
99	GO:0051607: defense response to virus	1.34E-02
100	GO:0016579: protein deubiquitination	1.34E-02
101	GO:0009860: pollen tube growth	1.40E-02
102	GO:0016049: cell growth	1.62E-02
103	GO:0008219: cell death	1.68E-02
104	GO:0046777: protein autophosphorylation	1.73E-02
105	GO:0048527: lateral root development	1.86E-02
106	GO:0010119: regulation of stomatal movement	1.86E-02
107	GO:0016051: carbohydrate biosynthetic process	1.99E-02
108	GO:0006099: tricarboxylic acid cycle	2.05E-02
109	GO:0030001: metal ion transport	2.18E-02
110	GO:0006887: exocytosis	2.25E-02
111	GO:0006897: endocytosis	2.25E-02
112	GO:0051707: response to other organism	2.38E-02
113	GO:0048364: root development	2.49E-02
114	GO:0006397: mRNA processing	2.49E-02
115	GO:0009846: pollen germination	2.80E-02
116	GO:0006812: cation transport	2.80E-02
117	GO:0006364: rRNA processing	2.94E-02
118	GO:0006813: potassium ion transport	2.94E-02
119	GO:0009736: cytokinin-activated signaling pathway	2.94E-02
120	GO:0006417: regulation of translation	3.17E-02
121	GO:0048367: shoot system development	3.39E-02
122	GO:0009790: embryo development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
2	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
3	GO:0005524: ATP binding	3.99E-05
4	GO:0004708: MAP kinase kinase activity	6.41E-05
5	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.08E-04
6	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.08E-04
7	GO:0004177: aminopeptidase activity	1.69E-04
8	GO:0004674: protein serine/threonine kinase activity	1.77E-04
9	GO:0016301: kinase activity	2.16E-04
10	GO:0004484: mRNA guanylyltransferase activity	2.52E-04
11	GO:0045140: inositol phosphoceramide synthase activity	2.52E-04
12	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	2.52E-04
13	GO:0019829: cation-transporting ATPase activity	4.19E-04
14	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.19E-04
15	GO:0016805: dipeptidase activity	4.19E-04
16	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	4.19E-04
17	GO:0004449: isocitrate dehydrogenase (NAD+) activity	6.01E-04
18	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.98E-04
19	GO:0004470: malic enzyme activity	7.98E-04
20	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	7.98E-04
21	GO:0005459: UDP-galactose transmembrane transporter activity	1.01E-03
22	GO:0008948: oxaloacetate decarboxylase activity	1.01E-03
23	GO:0017137: Rab GTPase binding	1.01E-03
24	GO:0004040: amidase activity	1.01E-03
25	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.09E-03
26	GO:0048040: UDP-glucuronate decarboxylase activity	1.23E-03
27	GO:0070403: NAD+ binding	1.47E-03
28	GO:0004747: ribokinase activity	1.47E-03
29	GO:0005096: GTPase activator activity	1.66E-03
30	GO:0008235: metalloexopeptidase activity	1.73E-03
31	GO:0004620: phospholipase activity	1.73E-03
32	GO:0030145: manganese ion binding	1.82E-03
33	GO:0008312: 7S RNA binding	2.00E-03
34	GO:0008865: fructokinase activity	2.00E-03
35	GO:0015491: cation:cation antiporter activity	2.00E-03
36	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.00E-03
37	GO:0008142: oxysterol binding	2.28E-03
38	GO:0005267: potassium channel activity	2.28E-03
39	GO:0005375: copper ion transmembrane transporter activity	2.28E-03
40	GO:0008417: fucosyltransferase activity	2.57E-03
41	GO:0003729: mRNA binding	2.57E-03
42	GO:0035091: phosphatidylinositol binding	2.76E-03
43	GO:0047617: acyl-CoA hydrolase activity	2.88E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.97E-03
45	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.75E-03
46	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.23E-03
47	GO:0005385: zinc ion transmembrane transporter activity	5.75E-03
48	GO:0043130: ubiquitin binding	5.75E-03
49	GO:0005528: FK506 binding	5.75E-03
50	GO:0003824: catalytic activity	6.32E-03
51	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.56E-03
52	GO:0033612: receptor serine/threonine kinase binding	6.56E-03
53	GO:0016887: ATPase activity	7.73E-03
54	GO:0047134: protein-disulfide reductase activity	8.32E-03
55	GO:0008536: Ran GTPase binding	9.26E-03
56	GO:0001085: RNA polymerase II transcription factor binding	9.26E-03
57	GO:0004527: exonuclease activity	9.26E-03
58	GO:0046873: metal ion transmembrane transporter activity	9.26E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	9.74E-03
60	GO:0004672: protein kinase activity	9.82E-03
61	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.07E-02
62	GO:0004518: nuclease activity	1.12E-02
63	GO:0016791: phosphatase activity	1.23E-02
64	GO:0003682: chromatin binding	1.38E-02
65	GO:0019825: oxygen binding	1.44E-02
66	GO:0008375: acetylglucosaminyltransferase activity	1.51E-02
67	GO:0004721: phosphoprotein phosphatase activity	1.56E-02
68	GO:0004004: ATP-dependent RNA helicase activity	1.56E-02
69	GO:0008233: peptidase activity	1.59E-02
70	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.86E-02
71	GO:0004722: protein serine/threonine phosphatase activity	2.12E-02
72	GO:0000149: SNARE binding	2.12E-02
73	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.12E-02
74	GO:0005506: iron ion binding	2.20E-02
75	GO:0051287: NAD binding	2.73E-02
76	GO:0031625: ubiquitin protein ligase binding	3.17E-02
77	GO:0008289: lipid binding	3.32E-02
78	GO:0022857: transmembrane transporter activity	3.63E-02
79	GO:0008026: ATP-dependent helicase activity	3.94E-02
80	GO:0020037: heme binding	3.96E-02
81	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005794: Golgi apparatus	2.00E-05
2	GO:0030131: clathrin adaptor complex	6.41E-05
3	GO:0030665: clathrin-coated vesicle membrane	1.21E-04
4	GO:0030125: clathrin vesicle coat	1.44E-04
5	GO:0016021: integral component of membrane	2.73E-04
6	GO:0005886: plasma membrane	4.15E-04
7	GO:0005802: trans-Golgi network	8.55E-04
8	GO:0032580: Golgi cisterna membrane	1.03E-03
9	GO:0005768: endosome	1.07E-03
10	GO:0030173: integral component of Golgi membrane	1.47E-03
11	GO:0005783: endoplasmic reticulum	1.49E-03
12	GO:0010494: cytoplasmic stress granule	2.57E-03
13	GO:0017119: Golgi transport complex	3.20E-03
14	GO:0031307: integral component of mitochondrial outer membrane	3.87E-03
15	GO:0030176: integral component of endoplasmic reticulum membrane	4.96E-03
16	GO:0005795: Golgi stack	4.96E-03
17	GO:0005829: cytosol	5.06E-03
18	GO:0043234: protein complex	5.35E-03
19	GO:0009524: phragmoplast	6.41E-03
20	GO:0005905: clathrin-coated pit	6.56E-03
21	GO:0031965: nuclear membrane	1.02E-02
22	GO:0005774: vacuolar membrane	1.12E-02
23	GO:0000145: exocyst	1.12E-02
24	GO:0000932: P-body	1.39E-02
25	GO:0005667: transcription factor complex	1.51E-02
26	GO:0000325: plant-type vacuole	1.86E-02
27	GO:0005819: spindle	2.12E-02
28	GO:0031902: late endosome membrane	2.25E-02
29	GO:0005856: cytoskeleton	2.59E-02
30	GO:0031966: mitochondrial membrane	2.80E-02
31	GO:0005635: nuclear envelope	3.09E-02
32	GO:0010008: endosome membrane	3.39E-02
33	GO:0012505: endomembrane system	3.70E-02
34	GO:0009706: chloroplast inner membrane	3.78E-02
35	GO:0005623: cell	4.52E-02