GO Enrichment Analysis of Co-expressed Genes with
AT1G54220
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 2 | GO:0019253: reductive pentose-phosphate cycle | 1.85E-08 |
| 3 | GO:0006096: glycolytic process | 1.18E-05 |
| 4 | GO:0042026: protein refolding | 1.76E-05 |
| 5 | GO:1901599: (-)-pinoresinol biosynthetic process | 6.91E-05 |
| 6 | GO:0019510: S-adenosylhomocysteine catabolic process | 6.91E-05 |
| 7 | GO:0006094: gluconeogenesis | 1.19E-04 |
| 8 | GO:0033353: S-adenosylmethionine cycle | 1.66E-04 |
| 9 | GO:0080183: response to photooxidative stress | 1.66E-04 |
| 10 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 1.66E-04 |
| 11 | GO:0006695: cholesterol biosynthetic process | 1.66E-04 |
| 12 | GO:1903338: regulation of cell wall organization or biogenesis | 1.66E-04 |
| 13 | GO:0007005: mitochondrion organization | 2.61E-04 |
| 14 | GO:0080092: regulation of pollen tube growth | 2.61E-04 |
| 15 | GO:0006730: one-carbon metabolic process | 2.61E-04 |
| 16 | GO:0006696: ergosterol biosynthetic process | 2.81E-04 |
| 17 | GO:0090506: axillary shoot meristem initiation | 2.81E-04 |
| 18 | GO:0006000: fructose metabolic process | 2.81E-04 |
| 19 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.06E-04 |
| 20 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.06E-04 |
| 21 | GO:0016556: mRNA modification | 4.06E-04 |
| 22 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.06E-04 |
| 23 | GO:0006546: glycine catabolic process | 5.42E-04 |
| 24 | GO:0006542: glutamine biosynthetic process | 5.42E-04 |
| 25 | GO:0019676: ammonia assimilation cycle | 5.42E-04 |
| 26 | GO:0010236: plastoquinone biosynthetic process | 6.87E-04 |
| 27 | GO:0010190: cytochrome b6f complex assembly | 8.40E-04 |
| 28 | GO:0006555: methionine metabolic process | 8.40E-04 |
| 29 | GO:0070814: hydrogen sulfide biosynthetic process | 8.40E-04 |
| 30 | GO:0046686: response to cadmium ion | 9.62E-04 |
| 31 | GO:0006458: 'de novo' protein folding | 9.99E-04 |
| 32 | GO:0017148: negative regulation of translation | 9.99E-04 |
| 33 | GO:0010067: procambium histogenesis | 9.99E-04 |
| 34 | GO:0016051: carbohydrate biosynthetic process | 1.12E-03 |
| 35 | GO:0050790: regulation of catalytic activity | 1.17E-03 |
| 36 | GO:0010196: nonphotochemical quenching | 1.17E-03 |
| 37 | GO:0048564: photosystem I assembly | 1.34E-03 |
| 38 | GO:0008610: lipid biosynthetic process | 1.34E-03 |
| 39 | GO:0006875: cellular metal ion homeostasis | 1.34E-03 |
| 40 | GO:0006526: arginine biosynthetic process | 1.53E-03 |
| 41 | GO:0006002: fructose 6-phosphate metabolic process | 1.53E-03 |
| 42 | GO:0033384: geranyl diphosphate biosynthetic process | 1.73E-03 |
| 43 | GO:0048589: developmental growth | 1.73E-03 |
| 44 | GO:0006098: pentose-phosphate shunt | 1.73E-03 |
| 45 | GO:0045337: farnesyl diphosphate biosynthetic process | 1.73E-03 |
| 46 | GO:0035999: tetrahydrofolate interconversion | 1.93E-03 |
| 47 | GO:0000103: sulfate assimilation | 2.14E-03 |
| 48 | GO:0010192: mucilage biosynthetic process | 2.14E-03 |
| 49 | GO:0009970: cellular response to sulfate starvation | 2.14E-03 |
| 50 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.36E-03 |
| 51 | GO:0009807: lignan biosynthetic process | 2.36E-03 |
| 52 | GO:0045037: protein import into chloroplast stroma | 2.58E-03 |
| 53 | GO:0006006: glucose metabolic process | 2.82E-03 |
| 54 | GO:0005986: sucrose biosynthetic process | 2.82E-03 |
| 55 | GO:0010223: secondary shoot formation | 3.06E-03 |
| 56 | GO:0010020: chloroplast fission | 3.06E-03 |
| 57 | GO:0009833: plant-type primary cell wall biogenesis | 3.56E-03 |
| 58 | GO:0007010: cytoskeleton organization | 3.81E-03 |
| 59 | GO:0008299: isoprenoid biosynthetic process | 4.08E-03 |
| 60 | GO:0061077: chaperone-mediated protein folding | 4.35E-03 |
| 61 | GO:0009294: DNA mediated transformation | 4.91E-03 |
| 62 | GO:0001944: vasculature development | 4.91E-03 |
| 63 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.91E-03 |
| 64 | GO:0010089: xylem development | 5.20E-03 |
| 65 | GO:0016117: carotenoid biosynthetic process | 5.50E-03 |
| 66 | GO:0000271: polysaccharide biosynthetic process | 5.80E-03 |
| 67 | GO:0010087: phloem or xylem histogenesis | 5.80E-03 |
| 68 | GO:0045489: pectin biosynthetic process | 6.11E-03 |
| 69 | GO:0019252: starch biosynthetic process | 6.74E-03 |
| 70 | GO:0009658: chloroplast organization | 7.13E-03 |
| 71 | GO:0010583: response to cyclopentenone | 7.40E-03 |
| 72 | GO:0009828: plant-type cell wall loosening | 8.08E-03 |
| 73 | GO:0010286: heat acclimation | 8.42E-03 |
| 74 | GO:0010027: thylakoid membrane organization | 9.13E-03 |
| 75 | GO:0009627: systemic acquired resistance | 9.87E-03 |
| 76 | GO:0015979: photosynthesis | 1.01E-02 |
| 77 | GO:0071555: cell wall organization | 1.05E-02 |
| 78 | GO:0016049: cell growth | 1.06E-02 |
| 79 | GO:0030244: cellulose biosynthetic process | 1.10E-02 |
| 80 | GO:0018298: protein-chromophore linkage | 1.10E-02 |
| 81 | GO:0008219: cell death | 1.10E-02 |
| 82 | GO:0009817: defense response to fungus, incompatible interaction | 1.10E-02 |
| 83 | GO:0009832: plant-type cell wall biogenesis | 1.14E-02 |
| 84 | GO:0048767: root hair elongation | 1.14E-02 |
| 85 | GO:0009407: toxin catabolic process | 1.18E-02 |
| 86 | GO:0007568: aging | 1.22E-02 |
| 87 | GO:0009409: response to cold | 1.54E-02 |
| 88 | GO:0009744: response to sucrose | 1.56E-02 |
| 89 | GO:0009636: response to toxic substance | 1.69E-02 |
| 90 | GO:0005975: carbohydrate metabolic process | 1.78E-02 |
| 91 | GO:0009664: plant-type cell wall organization | 1.83E-02 |
| 92 | GO:0042538: hyperosmotic salinity response | 1.83E-02 |
| 93 | GO:0009735: response to cytokinin | 2.13E-02 |
| 94 | GO:0007623: circadian rhythm | 3.65E-02 |
| 95 | GO:0009617: response to bacterium | 4.14E-02 |
| 96 | GO:0042742: defense response to bacterium | 4.69E-02 |
| 97 | GO:0009826: unidimensional cell growth | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008962: phosphatidylglycerophosphatase activity | 0.00E+00 |
| 2 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 3 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
| 4 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 5 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 6 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 7 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 6.91E-05 |
| 8 | GO:0015088: copper uptake transmembrane transporter activity | 6.91E-05 |
| 9 | GO:0042349: guiding stereospecific synthesis activity | 6.91E-05 |
| 10 | GO:0047259: glucomannan 4-beta-mannosyltransferase activity | 6.91E-05 |
| 11 | GO:0004013: adenosylhomocysteinase activity | 6.91E-05 |
| 12 | GO:0051996: squalene synthase activity | 6.91E-05 |
| 13 | GO:0010313: phytochrome binding | 6.91E-05 |
| 14 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 8.80E-05 |
| 15 | GO:0044183: protein binding involved in protein folding | 8.80E-05 |
| 16 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 1.66E-04 |
| 17 | GO:0004618: phosphoglycerate kinase activity | 1.66E-04 |
| 18 | GO:0004047: aminomethyltransferase activity | 1.66E-04 |
| 19 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 1.66E-04 |
| 20 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.66E-04 |
| 21 | GO:0008967: phosphoglycolate phosphatase activity | 1.66E-04 |
| 22 | GO:0004751: ribose-5-phosphate isomerase activity | 2.81E-04 |
| 23 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 2.81E-04 |
| 24 | GO:0003913: DNA photolyase activity | 2.81E-04 |
| 25 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.81E-04 |
| 26 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 4.06E-04 |
| 27 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 4.06E-04 |
| 28 | GO:0048027: mRNA 5'-UTR binding | 4.06E-04 |
| 29 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 5.42E-04 |
| 30 | GO:0004356: glutamate-ammonia ligase activity | 6.87E-04 |
| 31 | GO:0080030: methyl indole-3-acetate esterase activity | 8.40E-04 |
| 32 | GO:0004332: fructose-bisphosphate aldolase activity | 8.40E-04 |
| 33 | GO:0042578: phosphoric ester hydrolase activity | 8.40E-04 |
| 34 | GO:0051753: mannan synthase activity | 9.99E-04 |
| 35 | GO:0043295: glutathione binding | 1.17E-03 |
| 36 | GO:0009881: photoreceptor activity | 1.17E-03 |
| 37 | GO:0005198: structural molecule activity | 1.59E-03 |
| 38 | GO:0051287: NAD binding | 1.71E-03 |
| 39 | GO:0004337: geranyltranstransferase activity | 1.73E-03 |
| 40 | GO:0005381: iron ion transmembrane transporter activity | 1.93E-03 |
| 41 | GO:0004161: dimethylallyltranstransferase activity | 2.36E-03 |
| 42 | GO:0051082: unfolded protein binding | 2.69E-03 |
| 43 | GO:0004565: beta-galactosidase activity | 2.82E-03 |
| 44 | GO:0016758: transferase activity, transferring hexosyl groups | 3.27E-03 |
| 45 | GO:0016757: transferase activity, transferring glycosyl groups | 3.77E-03 |
| 46 | GO:0033612: receptor serine/threonine kinase binding | 4.35E-03 |
| 47 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 4.63E-03 |
| 48 | GO:0016760: cellulose synthase (UDP-forming) activity | 4.91E-03 |
| 49 | GO:0022891: substrate-specific transmembrane transporter activity | 4.91E-03 |
| 50 | GO:0005102: receptor binding | 5.50E-03 |
| 51 | GO:0042802: identical protein binding | 5.86E-03 |
| 52 | GO:0048038: quinone binding | 7.07E-03 |
| 53 | GO:0004518: nuclease activity | 7.40E-03 |
| 54 | GO:0016759: cellulose synthase activity | 8.08E-03 |
| 55 | GO:0005200: structural constituent of cytoskeleton | 8.42E-03 |
| 56 | GO:0008483: transaminase activity | 8.42E-03 |
| 57 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 8.42E-03 |
| 58 | GO:0016168: chlorophyll binding | 9.50E-03 |
| 59 | GO:0042803: protein homodimerization activity | 1.11E-02 |
| 60 | GO:0050661: NADP binding | 1.43E-02 |
| 61 | GO:0016491: oxidoreductase activity | 1.49E-02 |
| 62 | GO:0004364: glutathione transferase activity | 1.51E-02 |
| 63 | GO:0003777: microtubule motor activity | 2.07E-02 |
| 64 | GO:0004650: polygalacturonase activity | 2.32E-02 |
| 65 | GO:0030599: pectinesterase activity | 2.37E-02 |
| 66 | GO:0019843: rRNA binding | 2.90E-02 |
| 67 | GO:0008017: microtubule binding | 3.77E-02 |
| 68 | GO:0008194: UDP-glycosyltransferase activity | 3.95E-02 |
| 69 | GO:0008168: methyltransferase activity | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009570: chloroplast stroma | 1.25E-16 |
| 2 | GO:0009507: chloroplast | 5.39E-14 |
| 3 | GO:0009941: chloroplast envelope | 1.11E-11 |
| 4 | GO:0048046: apoplast | 6.03E-09 |
| 5 | GO:0009579: thylakoid | 7.03E-08 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.05E-06 |
| 7 | GO:0010319: stromule | 2.98E-05 |
| 8 | GO:0022626: cytosolic ribosome | 1.03E-04 |
| 9 | GO:0009517: PSII associated light-harvesting complex II | 5.42E-04 |
| 10 | GO:0031897: Tic complex | 5.42E-04 |
| 11 | GO:0005829: cytosol | 6.32E-04 |
| 12 | GO:0009539: photosystem II reaction center | 1.53E-03 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.73E-03 |
| 14 | GO:0016324: apical plasma membrane | 2.14E-03 |
| 15 | GO:0016020: membrane | 2.98E-03 |
| 16 | GO:0010287: plastoglobule | 3.18E-03 |
| 17 | GO:0042651: thylakoid membrane | 4.08E-03 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 4.08E-03 |
| 19 | GO:0009532: plastid stroma | 4.35E-03 |
| 20 | GO:0005618: cell wall | 4.92E-03 |
| 21 | GO:0009534: chloroplast thylakoid | 5.44E-03 |
| 22 | GO:0009523: photosystem II | 6.74E-03 |
| 23 | GO:0005874: microtubule | 8.55E-03 |
| 24 | GO:0031969: chloroplast membrane | 8.84E-03 |
| 25 | GO:0005856: cytoskeleton | 1.69E-02 |
| 26 | GO:0009706: chloroplast inner membrane | 2.47E-02 |
| 27 | GO:0005615: extracellular space | 3.95E-02 |