Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G54040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045176: apical protein localization0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0090042: tubulin deacetylation0.00E+00
6GO:0009773: photosynthetic electron transport in photosystem I2.86E-07
7GO:0032544: plastid translation5.59E-06
8GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.97E-05
9GO:0010027: thylakoid membrane organization2.57E-05
10GO:0045727: positive regulation of translation3.60E-05
11GO:0015979: photosynthesis8.85E-05
12GO:0010196: nonphotochemical quenching1.54E-04
13GO:0055114: oxidation-reduction process1.88E-04
14GO:0080051: cutin transport2.25E-04
15GO:0033481: galacturonate biosynthetic process2.25E-04
16GO:0005991: trehalose metabolic process2.25E-04
17GO:0071588: hydrogen peroxide mediated signaling pathway2.25E-04
18GO:0000023: maltose metabolic process2.25E-04
19GO:0051775: response to redox state2.25E-04
20GO:0097054: L-glutamate biosynthetic process5.00E-04
21GO:1904143: positive regulation of carotenoid biosynthetic process5.00E-04
22GO:0030388: fructose 1,6-bisphosphate metabolic process5.00E-04
23GO:0010270: photosystem II oxygen evolving complex assembly5.00E-04
24GO:0010275: NAD(P)H dehydrogenase complex assembly5.00E-04
25GO:0009629: response to gravity5.00E-04
26GO:1902326: positive regulation of chlorophyll biosynthetic process5.00E-04
27GO:0015786: UDP-glucose transport5.00E-04
28GO:0015908: fatty acid transport5.00E-04
29GO:0007154: cell communication5.00E-04
30GO:0005983: starch catabolic process5.45E-04
31GO:0009767: photosynthetic electron transport chain6.19E-04
32GO:0010207: photosystem II assembly6.96E-04
33GO:0015783: GDP-fucose transport8.13E-04
34GO:0090506: axillary shoot meristem initiation8.13E-04
35GO:0006000: fructose metabolic process8.13E-04
36GO:0006518: peptide metabolic process8.13E-04
37GO:0051604: protein maturation8.13E-04
38GO:0009768: photosynthesis, light harvesting in photosystem I1.05E-03
39GO:0016556: mRNA modification1.16E-03
40GO:0006020: inositol metabolic process1.16E-03
41GO:0006107: oxaloacetate metabolic process1.16E-03
42GO:0006537: glutamate biosynthetic process1.16E-03
43GO:0072334: UDP-galactose transmembrane transport1.16E-03
44GO:0009658: chloroplast organization1.49E-03
45GO:0010021: amylopectin biosynthetic process1.54E-03
46GO:0010222: stem vascular tissue pattern formation1.54E-03
47GO:0019676: ammonia assimilation cycle1.54E-03
48GO:0015994: chlorophyll metabolic process1.54E-03
49GO:0031122: cytoplasmic microtubule organization1.54E-03
50GO:0006021: inositol biosynthetic process1.54E-03
51GO:0071483: cellular response to blue light1.54E-03
52GO:0006734: NADH metabolic process1.54E-03
53GO:0009741: response to brassinosteroid1.87E-03
54GO:0009735: response to cytokinin1.94E-03
55GO:0080110: sporopollenin biosynthetic process1.97E-03
56GO:0009247: glycolipid biosynthetic process1.97E-03
57GO:0006656: phosphatidylcholine biosynthetic process1.97E-03
58GO:0009416: response to light stimulus2.27E-03
59GO:0010304: PSII associated light-harvesting complex II catabolic process2.43E-03
60GO:0048827: phyllome development2.43E-03
61GO:0042549: photosystem II stabilization2.43E-03
62GO:0010358: leaf shaping2.43E-03
63GO:0010190: cytochrome b6f complex assembly2.43E-03
64GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.43E-03
65GO:0006828: manganese ion transport2.43E-03
66GO:0046855: inositol phosphate dephosphorylation2.43E-03
67GO:0010019: chloroplast-nucleus signaling pathway2.91E-03
68GO:0010067: procambium histogenesis2.91E-03
69GO:0006458: 'de novo' protein folding2.91E-03
70GO:0042026: protein refolding2.91E-03
71GO:1901259: chloroplast rRNA processing2.91E-03
72GO:0009645: response to low light intensity stimulus3.43E-03
73GO:0050829: defense response to Gram-negative bacterium3.43E-03
74GO:0015995: chlorophyll biosynthetic process3.89E-03
75GO:0048564: photosystem I assembly3.98E-03
76GO:0008610: lipid biosynthetic process3.98E-03
77GO:0009819: drought recovery3.98E-03
78GO:0019375: galactolipid biosynthetic process3.98E-03
79GO:0009704: de-etiolation3.98E-03
80GO:0070413: trehalose metabolism in response to stress3.98E-03
81GO:0018298: protein-chromophore linkage4.31E-03
82GO:0017004: cytochrome complex assembly4.56E-03
83GO:0006002: fructose 6-phosphate metabolic process4.56E-03
84GO:0071482: cellular response to light stimulus4.56E-03
85GO:0005975: carbohydrate metabolic process5.13E-03
86GO:0000373: Group II intron splicing5.16E-03
87GO:0010206: photosystem II repair5.16E-03
88GO:0010205: photoinhibition5.79E-03
89GO:0042761: very long-chain fatty acid biosynthetic process5.79E-03
90GO:1900865: chloroplast RNA modification5.79E-03
91GO:0045036: protein targeting to chloroplast6.45E-03
92GO:0019538: protein metabolic process6.45E-03
93GO:0006816: calcium ion transport7.13E-03
94GO:0006352: DNA-templated transcription, initiation7.13E-03
95GO:0000272: polysaccharide catabolic process7.13E-03
96GO:0006415: translational termination7.13E-03
97GO:0018119: peptidyl-cysteine S-nitrosylation7.13E-03
98GO:0071555: cell wall organization7.80E-03
99GO:0006790: sulfur compound metabolic process7.84E-03
100GO:0010229: inflorescence development8.57E-03
101GO:0006094: gluconeogenesis8.57E-03
102GO:0005986: sucrose biosynthetic process8.57E-03
103GO:0010588: cotyledon vascular tissue pattern formation8.57E-03
104GO:0006108: malate metabolic process8.57E-03
105GO:0010223: secondary shoot formation9.33E-03
106GO:0010540: basipetal auxin transport9.33E-03
107GO:0019253: reductive pentose-phosphate cycle9.33E-03
108GO:0009809: lignin biosynthetic process9.50E-03
109GO:0006364: rRNA processing9.50E-03
110GO:0090351: seedling development1.01E-02
111GO:0046854: phosphatidylinositol phosphorylation1.01E-02
112GO:0009969: xyloglucan biosynthetic process1.01E-02
113GO:0009225: nucleotide-sugar metabolic process1.01E-02
114GO:0005985: sucrose metabolic process1.01E-02
115GO:0009833: plant-type primary cell wall biogenesis1.09E-02
116GO:0010025: wax biosynthetic process1.09E-02
117GO:0005992: trehalose biosynthetic process1.17E-02
118GO:0016575: histone deacetylation1.26E-02
119GO:0007017: microtubule-based process1.26E-02
120GO:0009409: response to cold1.32E-02
121GO:0016998: cell wall macromolecule catabolic process1.34E-02
122GO:0061077: chaperone-mediated protein folding1.34E-02
123GO:0009269: response to desiccation1.34E-02
124GO:0009624: response to nematode1.36E-02
125GO:0019748: secondary metabolic process1.43E-02
126GO:0016226: iron-sulfur cluster assembly1.43E-02
127GO:0006810: transport1.52E-02
128GO:0001944: vasculature development1.53E-02
129GO:0032259: methylation1.55E-02
130GO:0010089: xylem development1.62E-02
131GO:0010584: pollen exine formation1.62E-02
132GO:0019722: calcium-mediated signaling1.62E-02
133GO:0006629: lipid metabolic process1.63E-02
134GO:0010087: phloem or xylem histogenesis1.81E-02
135GO:0042631: cellular response to water deprivation1.81E-02
136GO:0042335: cuticle development1.81E-02
137GO:0010182: sugar mediated signaling pathway1.91E-02
138GO:0010268: brassinosteroid homeostasis1.91E-02
139GO:0042744: hydrogen peroxide catabolic process1.94E-02
140GO:0009790: embryo development1.99E-02
141GO:0006814: sodium ion transport2.01E-02
142GO:0009646: response to absence of light2.01E-02
143GO:0009791: post-embryonic development2.11E-02
144GO:0048825: cotyledon development2.11E-02
145GO:0019252: starch biosynthetic process2.11E-02
146GO:0016132: brassinosteroid biosynthetic process2.22E-02
147GO:0080156: mitochondrial mRNA modification2.22E-02
148GO:0000302: response to reactive oxygen species2.22E-02
149GO:0032502: developmental process2.32E-02
150GO:0019761: glucosinolate biosynthetic process2.32E-02
151GO:0007623: circadian rhythm2.35E-02
152GO:0010090: trichome morphogenesis2.43E-02
153GO:0030163: protein catabolic process2.43E-02
154GO:0016125: sterol metabolic process2.54E-02
155GO:0071805: potassium ion transmembrane transport2.65E-02
156GO:0007267: cell-cell signaling2.65E-02
157GO:0009911: positive regulation of flower development2.88E-02
158GO:0009816: defense response to bacterium, incompatible interaction3.00E-02
159GO:0010411: xyloglucan metabolic process3.24E-02
160GO:0009611: response to wounding3.44E-02
161GO:0009817: defense response to fungus, incompatible interaction3.48E-02
162GO:0009832: plant-type cell wall biogenesis3.61E-02
163GO:0009407: toxin catabolic process3.73E-02
164GO:0010218: response to far red light3.73E-02
165GO:0009631: cold acclimation3.86E-02
166GO:0045893: positive regulation of transcription, DNA-templated3.97E-02
167GO:0009637: response to blue light4.12E-02
168GO:0009853: photorespiration4.12E-02
169GO:0009867: jasmonic acid mediated signaling pathway4.12E-02
170GO:0006099: tricarboxylic acid cycle4.25E-02
171GO:0034599: cellular response to oxidative stress4.25E-02
172GO:0080167: response to karrikin4.49E-02
173GO:0055085: transmembrane transport4.49E-02
174GO:0006457: protein folding4.60E-02
175GO:0006631: fatty acid metabolic process4.66E-02
176GO:0010114: response to red light4.93E-02
177GO:0009744: response to sucrose4.93E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0051738: xanthophyll binding0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
6GO:0005363: maltose transmembrane transporter activity0.00E+00
7GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.60E-05
13GO:0050662: coenzyme binding1.84E-04
14GO:0052747: sinapyl alcohol dehydrogenase activity1.97E-04
15GO:0004033: aldo-keto reductase (NADP) activity1.97E-04
16GO:0016041: glutamate synthase (ferredoxin) activity2.25E-04
17GO:0030941: chloroplast targeting sequence binding2.25E-04
18GO:0010012: steroid 22-alpha hydroxylase activity2.25E-04
19GO:0009496: plastoquinol--plastocyanin reductase activity2.25E-04
20GO:0008568: microtubule-severing ATPase activity2.25E-04
21GO:0050308: sugar-phosphatase activity2.25E-04
22GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.25E-04
23GO:0019203: carbohydrate phosphatase activity2.25E-04
24GO:0003867: 4-aminobutyrate transaminase activity2.25E-04
25GO:0008746: NAD(P)+ transhydrogenase activity2.25E-04
26GO:0015245: fatty acid transporter activity2.25E-04
27GO:0016168: chlorophyll binding3.95E-04
28GO:0008967: phosphoglycolate phosphatase activity5.00E-04
29GO:0047746: chlorophyllase activity5.00E-04
30GO:0010297: heteropolysaccharide binding5.00E-04
31GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.00E-04
32GO:0052832: inositol monophosphate 3-phosphatase activity5.00E-04
33GO:0033201: alpha-1,4-glucan synthase activity5.00E-04
34GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.00E-04
35GO:0008805: carbon-monoxide oxygenase activity5.00E-04
36GO:0008934: inositol monophosphate 1-phosphatase activity5.00E-04
37GO:0052833: inositol monophosphate 4-phosphatase activity5.00E-04
38GO:0000234: phosphoethanolamine N-methyltransferase activity5.00E-04
39GO:0045551: cinnamyl-alcohol dehydrogenase activity5.45E-04
40GO:0004222: metalloendopeptidase activity5.87E-04
41GO:0004565: beta-galactosidase activity6.19E-04
42GO:0003824: catalytic activity7.77E-04
43GO:0005457: GDP-fucose transmembrane transporter activity8.13E-04
44GO:0070330: aromatase activity8.13E-04
45GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity8.13E-04
46GO:0004373: glycogen (starch) synthase activity8.13E-04
47GO:0004148: dihydrolipoyl dehydrogenase activity8.13E-04
48GO:0031409: pigment binding8.64E-04
49GO:0015079: potassium ion transmembrane transporter activity1.05E-03
50GO:0008508: bile acid:sodium symporter activity1.16E-03
51GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.16E-03
52GO:0035250: UDP-galactosyltransferase activity1.16E-03
53GO:0048487: beta-tubulin binding1.16E-03
54GO:0016149: translation release factor activity, codon specific1.16E-03
55GO:0005460: UDP-glucose transmembrane transporter activity1.16E-03
56GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.16E-03
57GO:0001053: plastid sigma factor activity1.54E-03
58GO:0051861: glycolipid binding1.54E-03
59GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.54E-03
60GO:0080032: methyl jasmonate esterase activity1.54E-03
61GO:0016987: sigma factor activity1.54E-03
62GO:1990137: plant seed peroxidase activity1.54E-03
63GO:0009011: starch synthase activity1.54E-03
64GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.54E-03
65GO:0050378: UDP-glucuronate 4-epimerase activity1.54E-03
66GO:0046872: metal ion binding1.96E-03
67GO:0051538: 3 iron, 4 sulfur cluster binding1.97E-03
68GO:0008374: O-acyltransferase activity1.97E-03
69GO:0005459: UDP-galactose transmembrane transporter activity1.97E-03
70GO:0018685: alkane 1-monooxygenase activity1.97E-03
71GO:0048038: quinone binding2.30E-03
72GO:0016615: malate dehydrogenase activity2.43E-03
73GO:2001070: starch binding2.43E-03
74GO:0080030: methyl indole-3-acetate esterase activity2.43E-03
75GO:0004130: cytochrome-c peroxidase activity2.43E-03
76GO:0016688: L-ascorbate peroxidase activity2.43E-03
77GO:0019843: rRNA binding2.88E-03
78GO:0051920: peroxiredoxin activity2.91E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.91E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.91E-03
81GO:0030060: L-malate dehydrogenase activity2.91E-03
82GO:0008237: metallopeptidase activity2.95E-03
83GO:0004620: phospholipase activity3.43E-03
84GO:0016491: oxidoreductase activity3.88E-03
85GO:0016209: antioxidant activity3.98E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.56E-03
87GO:0003747: translation release factor activity5.16E-03
88GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors5.16E-03
89GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.16E-03
90GO:0005384: manganese ion transmembrane transporter activity5.79E-03
91GO:0044183: protein binding involved in protein folding7.13E-03
92GO:0047372: acylglycerol lipase activity7.13E-03
93GO:0015386: potassium:proton antiporter activity7.13E-03
94GO:0004601: peroxidase activity7.57E-03
95GO:0008378: galactosyltransferase activity7.84E-03
96GO:0015095: magnesium ion transmembrane transporter activity8.57E-03
97GO:0031072: heat shock protein binding8.57E-03
98GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.33E-03
99GO:0008266: poly(U) RNA binding9.33E-03
100GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.16E-02
101GO:0051536: iron-sulfur cluster binding1.17E-02
102GO:0004857: enzyme inhibitor activity1.17E-02
103GO:0004407: histone deacetylase activity1.17E-02
104GO:0030599: pectinesterase activity1.28E-02
105GO:0004176: ATP-dependent peptidase activity1.34E-02
106GO:0033612: receptor serine/threonine kinase binding1.34E-02
107GO:0051082: unfolded protein binding1.36E-02
108GO:0022891: substrate-specific transmembrane transporter activity1.53E-02
109GO:0005102: receptor binding1.71E-02
110GO:0016762: xyloglucan:xyloglucosyl transferase activity2.22E-02
111GO:0016759: cellulose synthase activity2.54E-02
112GO:0016791: phosphatase activity2.54E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions2.65E-02
114GO:0005200: structural constituent of cytoskeleton2.65E-02
115GO:0016787: hydrolase activity2.87E-02
116GO:0051213: dioxygenase activity2.88E-02
117GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.99E-02
118GO:0016798: hydrolase activity, acting on glycosyl bonds3.24E-02
119GO:0008236: serine-type peptidase activity3.36E-02
120GO:0008168: methyltransferase activity3.50E-02
121GO:0050897: cobalt ion binding3.86E-02
122GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.12E-02
123GO:0004364: glutathione transferase activity4.79E-02
124GO:0004185: serine-type carboxypeptidase activity4.93E-02
125GO:0020037: heme binding4.99E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast6.51E-34
4GO:0009535: chloroplast thylakoid membrane4.58E-22
5GO:0009941: chloroplast envelope3.33E-19
6GO:0009534: chloroplast thylakoid2.80E-15
7GO:0009570: chloroplast stroma1.07E-10
8GO:0048046: apoplast4.10E-10
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.40E-10
10GO:0009579: thylakoid4.11E-07
11GO:0010287: plastoglobule3.74E-06
12GO:0009344: nitrite reductase complex [NAD(P)H]2.25E-04
13GO:0009782: photosystem I antenna complex2.25E-04
14GO:0016021: integral component of membrane2.34E-04
15GO:0000427: plastid-encoded plastid RNA polymerase complex5.00E-04
16GO:0030076: light-harvesting complex7.77E-04
17GO:0009897: external side of plasma membrane8.13E-04
18GO:0009505: plant-type cell wall1.04E-03
19GO:0009654: photosystem II oxygen evolving complex1.05E-03
20GO:0015630: microtubule cytoskeleton1.16E-03
21GO:0009526: plastid envelope1.54E-03
22GO:0009517: PSII associated light-harvesting complex II1.54E-03
23GO:0055035: plastid thylakoid membrane1.97E-03
24GO:0009512: cytochrome b6f complex1.97E-03
25GO:0031969: chloroplast membrane2.07E-03
26GO:0016020: membrane2.12E-03
27GO:0019898: extrinsic component of membrane2.15E-03
28GO:0009543: chloroplast thylakoid lumen2.88E-03
29GO:0010319: stromule2.95E-03
30GO:0009533: chloroplast stromal thylakoid3.43E-03
31GO:0031359: integral component of chloroplast outer membrane3.43E-03
32GO:0009501: amyloplast3.98E-03
33GO:0005811: lipid particle4.56E-03
34GO:0005618: cell wall4.66E-03
35GO:0046658: anchored component of plasma membrane6.20E-03
36GO:0030095: chloroplast photosystem II9.33E-03
37GO:0009536: plastid1.11E-02
38GO:0042651: thylakoid membrane1.26E-02
39GO:0009706: chloroplast inner membrane1.36E-02
40GO:0005802: trans-Golgi network1.82E-02
41GO:0005770: late endosome1.91E-02
42GO:0009522: photosystem I2.01E-02
43GO:0009523: photosystem II2.11E-02
44GO:0005759: mitochondrial matrix2.14E-02
45GO:0005768: endosome2.21E-02
46GO:0005773: vacuole2.31E-02
47GO:0032580: Golgi cisterna membrane2.54E-02
48GO:0030529: intracellular ribonucleoprotein complex2.88E-02
49GO:0005794: Golgi apparatus3.35E-02
50GO:0009707: chloroplast outer membrane3.48E-02
51GO:0031977: thylakoid lumen4.66E-02
<
Gene type



Gene DE type