co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0042493: response to drug	0.00E+00
7	GO:0006412: translation	8.86E-10
8	GO:0009735: response to cytokinin	9.82E-09
9	GO:0015995: chlorophyll biosynthetic process	3.82E-07
10	GO:0042254: ribosome biogenesis	5.95E-07
11	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.21E-06
12	GO:0015979: photosynthesis	1.84E-06
13	GO:0010206: photosystem II repair	3.23E-06
14	GO:0009828: plant-type cell wall loosening	6.12E-06
15	GO:0010027: thylakoid membrane organization	8.96E-06
16	GO:0010207: photosystem II assembly	1.51E-05
17	GO:0009664: plant-type cell wall organization	6.50E-05
18	GO:0009772: photosynthetic electron transport in photosystem II	8.77E-05
19	GO:0006434: seryl-tRNA aminoacylation	1.56E-04
20	GO:0043489: RNA stabilization	1.56E-04
21	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.56E-04
22	GO:0042759: long-chain fatty acid biosynthetic process	1.56E-04
23	GO:0042371: vitamin K biosynthetic process	1.56E-04
24	GO:0006949: syncytium formation	2.46E-04
25	GO:0010024: phytochromobilin biosynthetic process	3.55E-04
26	GO:0043039: tRNA aminoacylation	3.55E-04
27	GO:0043255: regulation of carbohydrate biosynthetic process	3.55E-04
28	GO:0010541: acropetal auxin transport	3.55E-04
29	GO:0001736: establishment of planar polarity	3.55E-04
30	GO:0010143: cutin biosynthetic process	4.23E-04
31	GO:0006788: heme oxidation	5.82E-04
32	GO:0010160: formation of animal organ boundary	5.82E-04
33	GO:0090391: granum assembly	5.82E-04
34	GO:0006518: peptide metabolic process	5.82E-04
35	GO:0080055: low-affinity nitrate transport	5.82E-04
36	GO:0045493: xylan catabolic process	5.82E-04
37	GO:0009826: unidimensional cell growth	6.49E-04
38	GO:0009658: chloroplast organization	6.88E-04
39	GO:0051513: regulation of monopolar cell growth	8.33E-04
40	GO:0071484: cellular response to light intensity	8.33E-04
41	GO:0051085: chaperone mediated protein folding requiring cofactor	8.33E-04
42	GO:0051639: actin filament network formation	8.33E-04
43	GO:0080170: hydrogen peroxide transmembrane transport	8.33E-04
44	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.33E-04
45	GO:0009650: UV protection	8.33E-04
46	GO:1901332: negative regulation of lateral root development	8.33E-04
47	GO:0006986: response to unfolded protein	8.33E-04
48	GO:0048443: stamen development	9.07E-04
49	GO:0009306: protein secretion	9.07E-04
50	GO:0000413: protein peptidyl-prolyl isomerization	1.05E-03
51	GO:0051764: actin crosslink formation	1.10E-03
52	GO:0030104: water homeostasis	1.10E-03
53	GO:0009958: positive gravitropism	1.13E-03
54	GO:0010236: plastoquinone biosynthetic process	1.40E-03
55	GO:0042549: photosystem II stabilization	1.72E-03
56	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.72E-03
57	GO:0060918: auxin transport	1.72E-03
58	GO:0010337: regulation of salicylic acid metabolic process	1.72E-03
59	GO:0042372: phylloquinone biosynthetic process	2.06E-03
60	GO:0017148: negative regulation of translation	2.06E-03
61	GO:0045490: pectin catabolic process	2.26E-03
62	GO:0010196: nonphotochemical quenching	2.42E-03
63	GO:0010311: lateral root formation	2.72E-03
64	GO:0048564: photosystem I assembly	2.80E-03
65	GO:0042255: ribosome assembly	2.80E-03
66	GO:0006353: DNA-templated transcription, termination	2.80E-03
67	GO:0006605: protein targeting	2.80E-03
68	GO:0031540: regulation of anthocyanin biosynthetic process	2.80E-03
69	GO:0032544: plastid translation	3.21E-03
70	GO:0048589: developmental growth	3.63E-03
71	GO:0030001: metal ion transport	3.73E-03
72	GO:0006779: porphyrin-containing compound biosynthetic process	4.06E-03
73	GO:0009926: auxin polar transport	4.21E-03
74	GO:0006782: protoporphyrinogen IX biosynthetic process	4.52E-03
75	GO:0006032: chitin catabolic process	4.52E-03
76	GO:0048829: root cap development	4.52E-03
77	GO:0010015: root morphogenesis	4.99E-03
78	GO:0009773: photosynthetic electron transport in photosystem I	4.99E-03
79	GO:0018119: peptidyl-cysteine S-nitrosylation	4.99E-03
80	GO:0048765: root hair cell differentiation	4.99E-03
81	GO:0008361: regulation of cell size	5.48E-03
82	GO:0016024: CDP-diacylglycerol biosynthetic process	5.48E-03
83	GO:0010152: pollen maturation	5.48E-03
84	GO:0009809: lignin biosynthetic process	5.66E-03
85	GO:2000012: regulation of auxin polar transport	5.98E-03
86	GO:0006006: glucose metabolic process	5.98E-03
87	GO:0010229: inflorescence development	5.98E-03
88	GO:0045454: cell redox homeostasis	6.48E-03
89	GO:0010540: basipetal auxin transport	6.50E-03
90	GO:0048467: gynoecium development	6.50E-03
91	GO:0019253: reductive pentose-phosphate cycle	6.50E-03
92	GO:0010053: root epidermal cell differentiation	7.04E-03
93	GO:0009825: multidimensional cell growth	7.04E-03
94	GO:0010167: response to nitrate	7.04E-03
95	GO:0010025: wax biosynthetic process	7.59E-03
96	GO:0042023: DNA endoreduplication	7.59E-03
97	GO:0009624: response to nematode	8.06E-03
98	GO:0000027: ribosomal large subunit assembly	8.16E-03
99	GO:0016042: lipid catabolic process	8.16E-03
100	GO:0051017: actin filament bundle assembly	8.16E-03
101	GO:0003333: amino acid transmembrane transport	9.34E-03
102	GO:0016998: cell wall macromolecule catabolic process	9.34E-03
103	GO:0030245: cellulose catabolic process	9.96E-03
104	GO:0007005: mitochondrion organization	9.96E-03
105	GO:0009411: response to UV	1.06E-02
106	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.19E-02
107	GO:0042742: defense response to bacterium	1.19E-02
108	GO:0042335: cuticle development	1.25E-02
109	GO:0080022: primary root development	1.25E-02
110	GO:0008033: tRNA processing	1.25E-02
111	GO:0034220: ion transmembrane transport	1.25E-02
112	GO:0009734: auxin-activated signaling pathway	1.31E-02
113	GO:0009793: embryo development ending in seed dormancy	1.35E-02
114	GO:0015986: ATP synthesis coupled proton transport	1.39E-02
115	GO:0009733: response to auxin	1.41E-02
116	GO:0009451: RNA modification	1.43E-02
117	GO:0009739: response to gibberellin	1.56E-02
118	GO:0032502: developmental process	1.61E-02
119	GO:0030163: protein catabolic process	1.68E-02
120	GO:0010252: auxin homeostasis	1.76E-02
121	GO:0009639: response to red or far red light	1.76E-02
122	GO:0009409: response to cold	1.87E-02
123	GO:0010411: xyloglucan metabolic process	2.24E-02
124	GO:0048481: plant ovule development	2.41E-02
125	GO:0030244: cellulose biosynthetic process	2.41E-02
126	GO:0006457: protein folding	2.42E-02
127	GO:0010218: response to far red light	2.58E-02
128	GO:0007568: aging	2.67E-02
129	GO:0009631: cold acclimation	2.67E-02
130	GO:0048527: lateral root development	2.67E-02
131	GO:0006865: amino acid transport	2.76E-02
132	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.78E-02
133	GO:0009637: response to blue light	2.85E-02
134	GO:0045087: innate immune response	2.85E-02
135	GO:0009640: photomorphogenesis	3.42E-02
136	GO:0008283: cell proliferation	3.42E-02
137	GO:0010114: response to red light	3.42E-02
138	GO:0032259: methylation	3.79E-02
139	GO:0006855: drug transmembrane transport	3.81E-02
140	GO:0008152: metabolic process	4.36E-02
141	GO:0006857: oligopeptide transport	4.43E-02
142	GO:0006096: glycolytic process	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0003735: structural constituent of ribosome	7.91E-12
8	GO:0019843: rRNA binding	3.64E-11
9	GO:0016851: magnesium chelatase activity	2.65E-08
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.61E-08
11	GO:0005528: FK506 binding	5.06E-07
12	GO:0010011: auxin binding	1.93E-05
13	GO:0030570: pectate lyase activity	4.81E-05
14	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.56E-04
15	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.56E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.56E-04
17	GO:0004828: serine-tRNA ligase activity	1.56E-04
18	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.55E-04
19	GO:0008266: poly(U) RNA binding	4.23E-04
20	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.82E-04
21	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	5.82E-04
22	GO:0080054: low-affinity nitrate transmembrane transporter activity	5.82E-04
23	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	5.82E-04
24	GO:0050734: hydroxycinnamoyltransferase activity	5.82E-04
25	GO:0016788: hydrolase activity, acting on ester bonds	7.07E-04
26	GO:0043023: ribosomal large subunit binding	8.33E-04
27	GO:0004659: prenyltransferase activity	1.10E-03
28	GO:0010328: auxin influx transmembrane transporter activity	1.10E-03
29	GO:0009044: xylan 1,4-beta-xylosidase activity	1.10E-03
30	GO:0004392: heme oxygenase (decyclizing) activity	1.10E-03
31	GO:0046556: alpha-L-arabinofuranosidase activity	1.10E-03
32	GO:0004040: amidase activity	1.40E-03
33	GO:0016829: lyase activity	1.66E-03
34	GO:0004252: serine-type endopeptidase activity	1.71E-03
35	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.72E-03
36	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.72E-03
37	GO:0051920: peroxiredoxin activity	2.06E-03
38	GO:0008236: serine-type peptidase activity	2.46E-03
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.59E-03
40	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.80E-03
41	GO:0016209: antioxidant activity	2.80E-03
42	GO:0052747: sinapyl alcohol dehydrogenase activity	2.80E-03
43	GO:0047617: acyl-CoA hydrolase activity	4.06E-03
44	GO:0004568: chitinase activity	4.52E-03
45	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.48E-03
46	GO:0052689: carboxylic ester hydrolase activity	5.85E-03
47	GO:0031072: heat shock protein binding	5.98E-03
48	GO:0010329: auxin efflux transmembrane transporter activity	5.98E-03
49	GO:0051082: unfolded protein binding	8.06E-03
50	GO:0051087: chaperone binding	8.74E-03
51	GO:0004707: MAP kinase activity	9.34E-03
52	GO:0008810: cellulase activity	1.06E-02
53	GO:0003756: protein disulfide isomerase activity	1.12E-02
54	GO:0003727: single-stranded RNA binding	1.12E-02
55	GO:0008080: N-acetyltransferase activity	1.32E-02
56	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.32E-02
57	GO:0051015: actin filament binding	1.68E-02
58	GO:0016791: phosphatase activity	1.76E-02
59	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.78E-02
60	GO:0008483: transaminase activity	1.84E-02
61	GO:0015250: water channel activity	1.99E-02
62	GO:0030247: polysaccharide binding	2.24E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.48E-02
64	GO:0004222: metalloendopeptidase activity	2.58E-02
65	GO:0050661: NADP binding	3.13E-02
66	GO:0015293: symporter activity	3.71E-02
67	GO:0005509: calcium ion binding	3.82E-02
68	GO:0051287: NAD binding	3.91E-02
69	GO:0003723: RNA binding	4.27E-02
70	GO:0003690: double-stranded DNA binding	4.33E-02
71	GO:0015171: amino acid transmembrane transporter activity	4.54E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009570: chloroplast stroma	1.01E-31
4	GO:0009507: chloroplast	5.48E-24
5	GO:0009579: thylakoid	1.44E-21
6	GO:0009941: chloroplast envelope	1.54E-17
7	GO:0009535: chloroplast thylakoid membrane	2.77E-17
8	GO:0009534: chloroplast thylakoid	3.62E-17
9	GO:0009543: chloroplast thylakoid lumen	4.41E-16
10	GO:0031977: thylakoid lumen	3.76E-13
11	GO:0005840: ribosome	1.86E-11
12	GO:0010007: magnesium chelatase complex	5.43E-09
13	GO:0016020: membrane	7.08E-06
14	GO:0030095: chloroplast photosystem II	1.51E-05
15	GO:0009654: photosystem II oxygen evolving complex	3.10E-05
16	GO:0019898: extrinsic component of membrane	9.77E-05
17	GO:0005618: cell wall	1.14E-04
18	GO:0009547: plastid ribosome	1.56E-04
19	GO:0043674: columella	1.56E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.56E-04
21	GO:0009515: granal stacked thylakoid	1.56E-04
22	GO:0005576: extracellular region	2.73E-04
23	GO:0000311: plastid large ribosomal subunit	3.29E-04
24	GO:0032432: actin filament bundle	8.33E-04
25	GO:0048046: apoplast	1.09E-03
26	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.72E-03
27	GO:0010319: stromule	1.78E-03
28	GO:0009533: chloroplast stromal thylakoid	2.42E-03
29	GO:0042807: central vacuole	2.42E-03
30	GO:0009986: cell surface	2.42E-03
31	GO:0005884: actin filament	4.99E-03
32	GO:0090404: pollen tube tip	4.99E-03
33	GO:0042651: thylakoid membrane	8.74E-03
34	GO:0015935: small ribosomal subunit	9.34E-03
35	GO:0009505: plant-type cell wall	1.67E-02
36	GO:0030529: intracellular ribonucleoprotein complex	1.99E-02
37	GO:0031969: chloroplast membrane	2.69E-02
38	GO:0022625: cytosolic large ribosomal subunit	2.83E-02