GO Enrichment Analysis of Co-expressed Genes with
AT1G53300
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 6 | GO:0006412: translation | 1.42E-08 |
| 7 | GO:0042254: ribosome biogenesis | 6.46E-07 |
| 8 | GO:0090391: granum assembly | 1.37E-06 |
| 9 | GO:0015979: photosynthesis | 1.76E-06 |
| 10 | GO:0015995: chlorophyll biosynthetic process | 1.88E-06 |
| 11 | GO:0009735: response to cytokinin | 1.50E-05 |
| 12 | GO:0010196: nonphotochemical quenching | 3.11E-05 |
| 13 | GO:0009772: photosynthetic electron transport in photosystem II | 3.11E-05 |
| 14 | GO:0010027: thylakoid membrane organization | 4.95E-05 |
| 15 | GO:0006779: porphyrin-containing compound biosynthetic process | 7.87E-05 |
| 16 | GO:0042759: long-chain fatty acid biosynthetic process | 8.09E-05 |
| 17 | GO:0042371: vitamin K biosynthetic process | 8.09E-05 |
| 18 | GO:0034337: RNA folding | 8.09E-05 |
| 19 | GO:0071588: hydrogen peroxide mediated signaling pathway | 8.09E-05 |
| 20 | GO:0006782: protoporphyrinogen IX biosynthetic process | 9.40E-05 |
| 21 | GO:0009773: photosynthetic electron transport in photosystem I | 1.11E-04 |
| 22 | GO:0010207: photosystem II assembly | 1.70E-04 |
| 23 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.93E-04 |
| 24 | GO:0006568: tryptophan metabolic process | 1.93E-04 |
| 25 | GO:0010025: wax biosynthetic process | 2.16E-04 |
| 26 | GO:0006986: response to unfolded protein | 4.66E-04 |
| 27 | GO:0071484: cellular response to light intensity | 4.66E-04 |
| 28 | GO:0051085: chaperone mediated protein folding requiring cofactor | 4.66E-04 |
| 29 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 6.21E-04 |
| 30 | GO:0010236: plastoquinone biosynthetic process | 7.86E-04 |
| 31 | GO:0006665: sphingolipid metabolic process | 7.86E-04 |
| 32 | GO:1901259: chloroplast rRNA processing | 1.14E-03 |
| 33 | GO:0042372: phylloquinone biosynthetic process | 1.14E-03 |
| 34 | GO:0009082: branched-chain amino acid biosynthetic process | 1.14E-03 |
| 35 | GO:0017148: negative regulation of translation | 1.14E-03 |
| 36 | GO:0009099: valine biosynthetic process | 1.14E-03 |
| 37 | GO:0010019: chloroplast-nucleus signaling pathway | 1.14E-03 |
| 38 | GO:0009658: chloroplast organization | 1.26E-03 |
| 39 | GO:0034599: cellular response to oxidative stress | 1.42E-03 |
| 40 | GO:0048564: photosystem I assembly | 1.54E-03 |
| 41 | GO:0008610: lipid biosynthetic process | 1.54E-03 |
| 42 | GO:0009097: isoleucine biosynthetic process | 1.76E-03 |
| 43 | GO:0032544: plastid translation | 1.76E-03 |
| 44 | GO:0010206: photosystem II repair | 1.98E-03 |
| 45 | GO:0009098: leucine biosynthetic process | 2.22E-03 |
| 46 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.22E-03 |
| 47 | GO:0006535: cysteine biosynthetic process from serine | 2.46E-03 |
| 48 | GO:0006949: syncytium formation | 2.46E-03 |
| 49 | GO:0043085: positive regulation of catalytic activity | 2.71E-03 |
| 50 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.71E-03 |
| 51 | GO:0006006: glucose metabolic process | 3.24E-03 |
| 52 | GO:0019253: reductive pentose-phosphate cycle | 3.52E-03 |
| 53 | GO:0000027: ribosomal large subunit assembly | 4.40E-03 |
| 54 | GO:0019344: cysteine biosynthetic process | 4.40E-03 |
| 55 | GO:0009790: embryo development | 4.81E-03 |
| 56 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.67E-03 |
| 57 | GO:0010091: trichome branching | 6.01E-03 |
| 58 | GO:0009739: response to gibberellin | 6.36E-03 |
| 59 | GO:0042335: cuticle development | 6.70E-03 |
| 60 | GO:0000413: protein peptidyl-prolyl isomerization | 6.70E-03 |
| 61 | GO:0006662: glycerol ether metabolic process | 7.06E-03 |
| 62 | GO:0015986: ATP synthesis coupled proton transport | 7.42E-03 |
| 63 | GO:0006457: protein folding | 7.76E-03 |
| 64 | GO:0000302: response to reactive oxygen species | 8.17E-03 |
| 65 | GO:0009828: plant-type cell wall loosening | 9.34E-03 |
| 66 | GO:0009567: double fertilization forming a zygote and endosperm | 9.34E-03 |
| 67 | GO:0016126: sterol biosynthetic process | 1.06E-02 |
| 68 | GO:0009817: defense response to fungus, incompatible interaction | 1.27E-02 |
| 69 | GO:0045454: cell redox homeostasis | 1.31E-02 |
| 70 | GO:0009631: cold acclimation | 1.41E-02 |
| 71 | GO:0030001: metal ion transport | 1.65E-02 |
| 72 | GO:0010114: response to red light | 1.80E-02 |
| 73 | GO:0009664: plant-type cell wall organization | 2.12E-02 |
| 74 | GO:0042538: hyperosmotic salinity response | 2.12E-02 |
| 75 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.29E-02 |
| 76 | GO:0006096: glycolytic process | 2.51E-02 |
| 77 | GO:0042545: cell wall modification | 2.81E-02 |
| 78 | GO:0042744: hydrogen peroxide catabolic process | 3.69E-02 |
| 79 | GO:0006633: fatty acid biosynthetic process | 3.96E-02 |
| 80 | GO:0045490: pectin catabolic process | 4.23E-02 |
| 81 | GO:0055114: oxidation-reduction process | 4.31E-02 |
| 82 | GO:0010468: regulation of gene expression | 4.80E-02 |
| 83 | GO:0008380: RNA splicing | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 3 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 4 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 5 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.51E-09 |
| 6 | GO:0019843: rRNA binding | 5.65E-08 |
| 7 | GO:0005528: FK506 binding | 6.64E-08 |
| 8 | GO:0003735: structural constituent of ribosome | 1.38E-07 |
| 9 | GO:0016851: magnesium chelatase activity | 3.27E-06 |
| 10 | GO:0043023: ribosomal large subunit binding | 3.27E-06 |
| 11 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 8.09E-05 |
| 12 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 8.09E-05 |
| 13 | GO:0004163: diphosphomevalonate decarboxylase activity | 8.09E-05 |
| 14 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 8.09E-05 |
| 15 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 8.09E-05 |
| 16 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.93E-04 |
| 17 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.24E-04 |
| 18 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 3.24E-04 |
| 19 | GO:0052656: L-isoleucine transaminase activity | 4.66E-04 |
| 20 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 4.66E-04 |
| 21 | GO:0052654: L-leucine transaminase activity | 4.66E-04 |
| 22 | GO:0008097: 5S rRNA binding | 4.66E-04 |
| 23 | GO:0052655: L-valine transaminase activity | 4.66E-04 |
| 24 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.21E-04 |
| 25 | GO:0004084: branched-chain-amino-acid transaminase activity | 6.21E-04 |
| 26 | GO:0004659: prenyltransferase activity | 6.21E-04 |
| 27 | GO:0009922: fatty acid elongase activity | 7.86E-04 |
| 28 | GO:0004040: amidase activity | 7.86E-04 |
| 29 | GO:0004130: cytochrome-c peroxidase activity | 9.59E-04 |
| 30 | GO:0016688: L-ascorbate peroxidase activity | 9.59E-04 |
| 31 | GO:0004124: cysteine synthase activity | 1.14E-03 |
| 32 | GO:0051920: peroxiredoxin activity | 1.14E-03 |
| 33 | GO:0016209: antioxidant activity | 1.54E-03 |
| 34 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 1.98E-03 |
| 35 | GO:0008047: enzyme activator activity | 2.46E-03 |
| 36 | GO:0004565: beta-galactosidase activity | 3.24E-03 |
| 37 | GO:0030170: pyridoxal phosphate binding | 4.58E-03 |
| 38 | GO:0016491: oxidoreductase activity | 4.59E-03 |
| 39 | GO:0051087: chaperone binding | 4.70E-03 |
| 40 | GO:0004707: MAP kinase activity | 5.02E-03 |
| 41 | GO:0047134: protein-disulfide reductase activity | 6.35E-03 |
| 42 | GO:0008080: N-acetyltransferase activity | 7.06E-03 |
| 43 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 7.06E-03 |
| 44 | GO:0004791: thioredoxin-disulfide reductase activity | 7.42E-03 |
| 45 | GO:0005507: copper ion binding | 8.75E-03 |
| 46 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.94E-03 |
| 47 | GO:0008483: transaminase activity | 9.75E-03 |
| 48 | GO:0008236: serine-type peptidase activity | 1.23E-02 |
| 49 | GO:0005509: calcium ion binding | 1.24E-02 |
| 50 | GO:0050661: NADP binding | 1.65E-02 |
| 51 | GO:0004185: serine-type carboxypeptidase activity | 1.80E-02 |
| 52 | GO:0051287: NAD binding | 2.07E-02 |
| 53 | GO:0045330: aspartyl esterase activity | 2.40E-02 |
| 54 | GO:0016887: ATPase activity | 2.51E-02 |
| 55 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.57E-02 |
| 56 | GO:0030599: pectinesterase activity | 2.75E-02 |
| 57 | GO:0051082: unfolded protein binding | 2.87E-02 |
| 58 | GO:0015035: protein disulfide oxidoreductase activity | 2.93E-02 |
| 59 | GO:0016740: transferase activity | 3.50E-02 |
| 60 | GO:0004252: serine-type endopeptidase activity | 3.62E-02 |
| 61 | GO:0046910: pectinesterase inhibitor activity | 4.02E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 4.20E-32 |
| 3 | GO:0009507: chloroplast | 4.63E-30 |
| 4 | GO:0009579: thylakoid | 6.04E-24 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 1.88E-20 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 3.17E-17 |
| 7 | GO:0009941: chloroplast envelope | 5.14E-17 |
| 8 | GO:0009534: chloroplast thylakoid | 7.50E-16 |
| 9 | GO:0031977: thylakoid lumen | 4.92E-13 |
| 10 | GO:0005840: ribosome | 6.68E-09 |
| 11 | GO:0030095: chloroplast photosystem II | 2.99E-08 |
| 12 | GO:0010007: magnesium chelatase complex | 1.37E-06 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 7.07E-06 |
| 14 | GO:0019898: extrinsic component of membrane | 2.46E-05 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 8.09E-05 |
| 16 | GO:0009923: fatty acid elongase complex | 8.09E-05 |
| 17 | GO:0030093: chloroplast photosystem I | 1.93E-04 |
| 18 | GO:0009509: chromoplast | 3.24E-04 |
| 19 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 9.59E-04 |
| 20 | GO:0009533: chloroplast stromal thylakoid | 1.34E-03 |
| 21 | GO:0000311: plastid large ribosomal subunit | 2.97E-03 |
| 22 | GO:0032040: small-subunit processome | 2.97E-03 |
| 23 | GO:0009508: plastid chromosome | 3.24E-03 |
| 24 | GO:0010287: plastoglobule | 3.91E-03 |
| 25 | GO:0015935: small ribosomal subunit | 5.02E-03 |
| 26 | GO:0005618: cell wall | 7.13E-03 |
| 27 | GO:0009523: photosystem II | 7.79E-03 |
| 28 | GO:0009295: nucleoid | 9.75E-03 |
| 29 | GO:0010319: stromule | 9.75E-03 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 1.06E-02 |
| 31 | GO:0022625: cytosolic large ribosomal subunit | 1.15E-02 |
| 32 | GO:0016020: membrane | 1.31E-02 |
| 33 | GO:0009706: chloroplast inner membrane | 2.87E-02 |
| 34 | GO:0005759: mitochondrial matrix | 3.96E-02 |
| 35 | GO:0005802: trans-Golgi network | 4.58E-02 |