GO Enrichment Analysis of Co-expressed Genes with
AT1G53290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 3 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0006412: translation | 1.33E-10 |
| 8 | GO:0090391: granum assembly | 5.82E-09 |
| 9 | GO:0042254: ribosome biogenesis | 3.49E-08 |
| 10 | GO:0015979: photosynthesis | 1.29E-07 |
| 11 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.25E-06 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 8.14E-06 |
| 13 | GO:0010027: thylakoid membrane organization | 9.69E-06 |
| 14 | GO:0010236: plastoquinone biosynthetic process | 3.28E-05 |
| 15 | GO:0009772: photosynthetic electron transport in photosystem II | 9.14E-05 |
| 16 | GO:0010196: nonphotochemical quenching | 9.14E-05 |
| 17 | GO:0008610: lipid biosynthetic process | 1.18E-04 |
| 18 | GO:0032544: plastid translation | 1.47E-04 |
| 19 | GO:0043489: RNA stabilization | 1.60E-04 |
| 20 | GO:0042371: vitamin K biosynthetic process | 1.60E-04 |
| 21 | GO:0043686: co-translational protein modification | 1.60E-04 |
| 22 | GO:1902458: positive regulation of stomatal opening | 1.60E-04 |
| 23 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.60E-04 |
| 24 | GO:0009735: response to cytokinin | 1.63E-04 |
| 25 | GO:0018298: protein-chromophore linkage | 2.79E-04 |
| 26 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.65E-04 |
| 27 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.65E-04 |
| 28 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.65E-04 |
| 29 | GO:0010207: photosystem II assembly | 4.38E-04 |
| 30 | GO:0010114: response to red light | 5.29E-04 |
| 31 | GO:0006696: ergosterol biosynthetic process | 5.97E-04 |
| 32 | GO:0009658: chloroplast organization | 7.28E-04 |
| 33 | GO:0030245: cellulose catabolic process | 7.98E-04 |
| 34 | GO:1901332: negative regulation of lateral root development | 8.53E-04 |
| 35 | GO:0006986: response to unfolded protein | 8.53E-04 |
| 36 | GO:2001141: regulation of RNA biosynthetic process | 8.53E-04 |
| 37 | GO:0071484: cellular response to light intensity | 8.53E-04 |
| 38 | GO:0051085: chaperone mediated protein folding requiring cofactor | 8.53E-04 |
| 39 | GO:0051639: actin filament network formation | 8.53E-04 |
| 40 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.67E-04 |
| 41 | GO:0000413: protein peptidyl-prolyl isomerization | 1.09E-03 |
| 42 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.13E-03 |
| 43 | GO:0051764: actin crosslink formation | 1.13E-03 |
| 44 | GO:0009765: photosynthesis, light harvesting | 1.13E-03 |
| 45 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.43E-03 |
| 46 | GO:0031365: N-terminal protein amino acid modification | 1.43E-03 |
| 47 | GO:0016120: carotene biosynthetic process | 1.43E-03 |
| 48 | GO:0006457: protein folding | 1.53E-03 |
| 49 | GO:0009828: plant-type cell wall loosening | 1.74E-03 |
| 50 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.76E-03 |
| 51 | GO:0006633: fatty acid biosynthetic process | 2.10E-03 |
| 52 | GO:0042372: phylloquinone biosynthetic process | 2.11E-03 |
| 53 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.11E-03 |
| 54 | GO:0010189: vitamin E biosynthetic process | 2.11E-03 |
| 55 | GO:0010019: chloroplast-nucleus signaling pathway | 2.11E-03 |
| 56 | GO:0015995: chlorophyll biosynthetic process | 2.43E-03 |
| 57 | GO:0009395: phospholipid catabolic process | 2.48E-03 |
| 58 | GO:2000070: regulation of response to water deprivation | 2.88E-03 |
| 59 | GO:0048564: photosystem I assembly | 2.88E-03 |
| 60 | GO:0009631: cold acclimation | 3.10E-03 |
| 61 | GO:0071482: cellular response to light stimulus | 3.29E-03 |
| 62 | GO:0015996: chlorophyll catabolic process | 3.29E-03 |
| 63 | GO:0007186: G-protein coupled receptor signaling pathway | 3.29E-03 |
| 64 | GO:0009637: response to blue light | 3.40E-03 |
| 65 | GO:0034599: cellular response to oxidative stress | 3.55E-03 |
| 66 | GO:0010206: photosystem II repair | 3.72E-03 |
| 67 | GO:0006949: syncytium formation | 4.64E-03 |
| 68 | GO:0043085: positive regulation of catalytic activity | 5.12E-03 |
| 69 | GO:0006352: DNA-templated transcription, initiation | 5.12E-03 |
| 70 | GO:0009664: plant-type cell wall organization | 5.48E-03 |
| 71 | GO:0045037: protein import into chloroplast stroma | 5.62E-03 |
| 72 | GO:0009409: response to cold | 5.70E-03 |
| 73 | GO:0006006: glucose metabolic process | 6.14E-03 |
| 74 | GO:0019253: reductive pentose-phosphate cycle | 6.67E-03 |
| 75 | GO:0006869: lipid transport | 7.64E-03 |
| 76 | GO:0051017: actin filament bundle assembly | 8.38E-03 |
| 77 | GO:0000027: ribosomal large subunit assembly | 8.38E-03 |
| 78 | GO:0009695: jasmonic acid biosynthetic process | 8.97E-03 |
| 79 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.97E-03 |
| 80 | GO:0007017: microtubule-based process | 8.97E-03 |
| 81 | GO:0031408: oxylipin biosynthetic process | 9.59E-03 |
| 82 | GO:0080022: primary root development | 1.29E-02 |
| 83 | GO:0042335: cuticle development | 1.29E-02 |
| 84 | GO:0006662: glycerol ether metabolic process | 1.36E-02 |
| 85 | GO:0010182: sugar mediated signaling pathway | 1.36E-02 |
| 86 | GO:0015986: ATP synthesis coupled proton transport | 1.43E-02 |
| 87 | GO:0000302: response to reactive oxygen species | 1.58E-02 |
| 88 | GO:1901657: glycosyl compound metabolic process | 1.73E-02 |
| 89 | GO:0016126: sterol biosynthetic process | 2.05E-02 |
| 90 | GO:0009826: unidimensional cell growth | 2.17E-02 |
| 91 | GO:0042128: nitrate assimilation | 2.22E-02 |
| 92 | GO:0006810: transport | 2.23E-02 |
| 93 | GO:0016311: dephosphorylation | 2.39E-02 |
| 94 | GO:0009817: defense response to fungus, incompatible interaction | 2.47E-02 |
| 95 | GO:0055085: transmembrane transport | 2.48E-02 |
| 96 | GO:0010311: lateral root formation | 2.56E-02 |
| 97 | GO:0009407: toxin catabolic process | 2.65E-02 |
| 98 | GO:0010218: response to far red light | 2.65E-02 |
| 99 | GO:0080167: response to karrikin | 2.79E-02 |
| 100 | GO:0045087: innate immune response | 2.93E-02 |
| 101 | GO:0045454: cell redox homeostasis | 3.34E-02 |
| 102 | GO:0009636: response to toxic substance | 3.81E-02 |
| 103 | GO:0016042: lipid catabolic process | 3.99E-02 |
| 104 | GO:0042538: hyperosmotic salinity response | 4.12E-02 |
| 105 | GO:0009809: lignin biosynthetic process | 4.34E-02 |
| 106 | GO:0071555: cell wall organization | 4.42E-02 |
| 107 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.44E-02 |
| 108 | GO:0008152: metabolic process | 4.52E-02 |
| 109 | GO:0006857: oligopeptide transport | 4.55E-02 |
| 110 | GO:0006096: glycolytic process | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 3 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 4 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 5 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 6 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 7 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 8 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 5.55E-16 |
| 10 | GO:0003735: structural constituent of ribosome | 1.31E-10 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.08E-07 |
| 12 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.25E-06 |
| 13 | GO:0043495: protein anchor | 2.01E-05 |
| 14 | GO:0005528: FK506 binding | 2.78E-05 |
| 15 | GO:0019899: enzyme binding | 9.14E-05 |
| 16 | GO:0004321: fatty-acyl-CoA synthase activity | 1.60E-04 |
| 17 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.60E-04 |
| 18 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.60E-04 |
| 19 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 1.60E-04 |
| 20 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.60E-04 |
| 21 | GO:0042586: peptide deformylase activity | 1.60E-04 |
| 22 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.60E-04 |
| 23 | GO:0016168: chlorophyll binding | 2.10E-04 |
| 24 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.65E-04 |
| 25 | GO:0008266: poly(U) RNA binding | 4.38E-04 |
| 26 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 5.97E-04 |
| 27 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 5.97E-04 |
| 28 | GO:0051087: chaperone binding | 6.66E-04 |
| 29 | GO:0016788: hydrolase activity, acting on ester bonds | 7.49E-04 |
| 30 | GO:0008097: 5S rRNA binding | 8.53E-04 |
| 31 | GO:0016851: magnesium chelatase activity | 8.53E-04 |
| 32 | GO:0008810: cellulase activity | 8.67E-04 |
| 33 | GO:0022891: substrate-specific transmembrane transporter activity | 8.67E-04 |
| 34 | GO:0004659: prenyltransferase activity | 1.13E-03 |
| 35 | GO:0001053: plastid sigma factor activity | 1.13E-03 |
| 36 | GO:0016836: hydro-lyase activity | 1.13E-03 |
| 37 | GO:0016987: sigma factor activity | 1.13E-03 |
| 38 | GO:0052793: pectin acetylesterase activity | 1.13E-03 |
| 39 | GO:0004040: amidase activity | 1.43E-03 |
| 40 | GO:0016688: L-ascorbate peroxidase activity | 1.76E-03 |
| 41 | GO:0004130: cytochrome-c peroxidase activity | 1.76E-03 |
| 42 | GO:0051920: peroxiredoxin activity | 2.11E-03 |
| 43 | GO:0004620: phospholipase activity | 2.48E-03 |
| 44 | GO:0052747: sinapyl alcohol dehydrogenase activity | 2.88E-03 |
| 45 | GO:0030674: protein binding, bridging | 2.88E-03 |
| 46 | GO:0016209: antioxidant activity | 2.88E-03 |
| 47 | GO:0004033: aldo-keto reductase (NADP) activity | 2.88E-03 |
| 48 | GO:0042802: identical protein binding | 3.20E-03 |
| 49 | GO:0003993: acid phosphatase activity | 3.55E-03 |
| 50 | GO:0016207: 4-coumarate-CoA ligase activity | 3.72E-03 |
| 51 | GO:0008047: enzyme activator activity | 4.64E-03 |
| 52 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 5.62E-03 |
| 53 | GO:0052689: carboxylic ester hydrolase activity | 6.14E-03 |
| 54 | GO:0004565: beta-galactosidase activity | 6.14E-03 |
| 55 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 6.58E-03 |
| 56 | GO:0031409: pigment binding | 7.79E-03 |
| 57 | GO:0043424: protein histidine kinase binding | 8.97E-03 |
| 58 | GO:0030570: pectate lyase activity | 1.09E-02 |
| 59 | GO:0005509: calcium ion binding | 1.11E-02 |
| 60 | GO:0047134: protein-disulfide reductase activity | 1.22E-02 |
| 61 | GO:0008289: lipid binding | 1.35E-02 |
| 62 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.36E-02 |
| 63 | GO:0004791: thioredoxin-disulfide reductase activity | 1.43E-02 |
| 64 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.73E-02 |
| 65 | GO:0051015: actin filament binding | 1.73E-02 |
| 66 | GO:0005200: structural constituent of cytoskeleton | 1.89E-02 |
| 67 | GO:0016491: oxidoreductase activity | 1.90E-02 |
| 68 | GO:0102483: scopolin beta-glucosidase activity | 2.30E-02 |
| 69 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.39E-02 |
| 70 | GO:0008236: serine-type peptidase activity | 2.39E-02 |
| 71 | GO:0008422: beta-glucosidase activity | 3.12E-02 |
| 72 | GO:0050661: NADP binding | 3.21E-02 |
| 73 | GO:0004364: glutathione transferase activity | 3.41E-02 |
| 74 | GO:0042803: protein homodimerization activity | 3.50E-02 |
| 75 | GO:0004185: serine-type carboxypeptidase activity | 3.51E-02 |
| 76 | GO:0015293: symporter activity | 3.81E-02 |
| 77 | GO:0051287: NAD binding | 4.02E-02 |
| 78 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.34E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.13E-40 |
| 3 | GO:0009570: chloroplast stroma | 8.55E-29 |
| 4 | GO:0009941: chloroplast envelope | 1.44E-24 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.54E-23 |
| 6 | GO:0009579: thylakoid | 6.63E-23 |
| 7 | GO:0009534: chloroplast thylakoid | 6.89E-20 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.82E-19 |
| 9 | GO:0031977: thylakoid lumen | 9.59E-17 |
| 10 | GO:0005840: ribosome | 2.40E-11 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 6.95E-07 |
| 12 | GO:0019898: extrinsic component of membrane | 3.73E-06 |
| 13 | GO:0009533: chloroplast stromal thylakoid | 9.14E-05 |
| 14 | GO:0009547: plastid ribosome | 1.60E-04 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.60E-04 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.80E-04 |
| 17 | GO:0015934: large ribosomal subunit | 3.38E-04 |
| 18 | GO:0000312: plastid small ribosomal subunit | 4.38E-04 |
| 19 | GO:0030095: chloroplast photosystem II | 4.38E-04 |
| 20 | GO:0009528: plastid inner membrane | 5.97E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 5.97E-04 |
| 22 | GO:0042651: thylakoid membrane | 6.66E-04 |
| 23 | GO:0015630: microtubule cytoskeleton | 8.53E-04 |
| 24 | GO:0032432: actin filament bundle | 8.53E-04 |
| 25 | GO:0009527: plastid outer membrane | 1.13E-03 |
| 26 | GO:0016020: membrane | 1.20E-03 |
| 27 | GO:0009523: photosystem II | 1.35E-03 |
| 28 | GO:0010287: plastoglobule | 1.47E-03 |
| 29 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.76E-03 |
| 30 | GO:0010319: stromule | 1.84E-03 |
| 31 | GO:0005618: cell wall | 4.43E-03 |
| 32 | GO:0005884: actin filament | 5.12E-03 |
| 33 | GO:0031969: chloroplast membrane | 5.41E-03 |
| 34 | GO:0000311: plastid large ribosomal subunit | 5.62E-03 |
| 35 | GO:0030076: light-harvesting complex | 7.22E-03 |
| 36 | GO:0015935: small ribosomal subunit | 9.59E-03 |
| 37 | GO:0009532: plastid stroma | 9.59E-03 |
| 38 | GO:0048046: apoplast | 1.09E-02 |
| 39 | GO:0005759: mitochondrial matrix | 1.32E-02 |
| 40 | GO:0009522: photosystem I | 1.43E-02 |
| 41 | GO:0022626: cytosolic ribosome | 1.74E-02 |
| 42 | GO:0046658: anchored component of plasma membrane | 1.92E-02 |
| 43 | GO:0022627: cytosolic small ribosomal subunit | 1.92E-02 |
| 44 | GO:0030529: intracellular ribonucleoprotein complex | 2.05E-02 |
| 45 | GO:0005777: peroxisome | 2.19E-02 |
| 46 | GO:0009707: chloroplast outer membrane | 2.47E-02 |
| 47 | GO:0031225: anchored component of membrane | 3.20E-02 |