Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042425: choline biosynthetic process0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
4GO:0006429: leucyl-tRNA aminoacylation0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0090071: negative regulation of ribosome biogenesis0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0016553: base conversion or substitution editing0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:0015979: photosynthesis2.01E-09
12GO:0010027: thylakoid membrane organization2.78E-09
13GO:0009773: photosynthetic electron transport in photosystem I1.01E-08
14GO:0030388: fructose 1,6-bisphosphate metabolic process4.28E-06
15GO:0071482: cellular response to light stimulus1.20E-05
16GO:0006000: fructose metabolic process1.52E-05
17GO:0090391: granum assembly1.52E-05
18GO:0080170: hydrogen peroxide transmembrane transport3.40E-05
19GO:0006094: gluconeogenesis5.74E-05
20GO:0015994: chlorophyll metabolic process6.10E-05
21GO:0010207: photosystem II assembly6.96E-05
22GO:0015995: chlorophyll biosynthetic process8.33E-05
23GO:0045038: protein import into chloroplast thylakoid membrane9.62E-05
24GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.39E-04
25GO:0009306: protein secretion2.22E-04
26GO:0010196: nonphotochemical quenching2.48E-04
27GO:0034220: ion transmembrane transport2.77E-04
28GO:1904964: positive regulation of phytol biosynthetic process3.07E-04
29GO:0065002: intracellular protein transmembrane transport3.07E-04
30GO:0043686: co-translational protein modification3.07E-04
31GO:1902458: positive regulation of stomatal opening3.07E-04
32GO:0010028: xanthophyll cycle3.07E-04
33GO:0034337: RNA folding3.07E-04
34GO:0071588: hydrogen peroxide mediated signaling pathway3.07E-04
35GO:0000305: response to oxygen radical3.07E-04
36GO:0019646: aerobic electron transport chain3.07E-04
37GO:0043953: protein transport by the Tat complex3.07E-04
38GO:0043489: RNA stabilization3.07E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process3.07E-04
40GO:0009642: response to light intensity3.13E-04
41GO:0032544: plastid translation3.84E-04
42GO:0006002: fructose 6-phosphate metabolic process3.84E-04
43GO:0010206: photosystem II repair4.63E-04
44GO:0010205: photoinhibition5.47E-04
45GO:0016122: xanthophyll metabolic process6.71E-04
46GO:1903426: regulation of reactive oxygen species biosynthetic process6.71E-04
47GO:0006568: tryptophan metabolic process6.71E-04
48GO:0010275: NAD(P)H dehydrogenase complex assembly6.71E-04
49GO:1902326: positive regulation of chlorophyll biosynthetic process6.71E-04
50GO:0035304: regulation of protein dephosphorylation6.71E-04
51GO:1900871: chloroplast mRNA modification6.71E-04
52GO:0018026: peptidyl-lysine monomethylation6.71E-04
53GO:0005983: starch catabolic process8.40E-04
54GO:0005986: sucrose biosynthetic process9.50E-04
55GO:0051604: protein maturation1.09E-03
56GO:0016050: vesicle organization1.09E-03
57GO:1902448: positive regulation of shade avoidance1.09E-03
58GO:0009631: cold acclimation1.09E-03
59GO:0006518: peptide metabolic process1.09E-03
60GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.09E-03
61GO:0034599: cellular response to oxidative stress1.29E-03
62GO:0006833: water transport1.33E-03
63GO:0006636: unsaturated fatty acid biosynthetic process1.33E-03
64GO:2001141: regulation of RNA biosynthetic process1.56E-03
65GO:0009052: pentose-phosphate shunt, non-oxidative branch1.56E-03
66GO:1901332: negative regulation of lateral root development1.56E-03
67GO:0010021: amylopectin biosynthetic process2.09E-03
68GO:0009765: photosynthesis, light harvesting2.09E-03
69GO:0006109: regulation of carbohydrate metabolic process2.09E-03
70GO:0045727: positive regulation of translation2.09E-03
71GO:0030104: water homeostasis2.09E-03
72GO:0006749: glutathione metabolic process2.09E-03
73GO:0071369: cellular response to ethylene stimulus2.12E-03
74GO:0008152: metabolic process2.19E-03
75GO:0031365: N-terminal protein amino acid modification2.67E-03
76GO:0006656: phosphatidylcholine biosynthetic process2.67E-03
77GO:0032543: mitochondrial translation2.67E-03
78GO:0009658: chloroplast organization2.98E-03
79GO:0042549: photosystem II stabilization3.30E-03
80GO:0000470: maturation of LSU-rRNA3.30E-03
81GO:0016554: cytidine to uridine editing3.30E-03
82GO:0006655: phosphatidylglycerol biosynthetic process3.30E-03
83GO:0019252: starch biosynthetic process3.35E-03
84GO:0000302: response to reactive oxygen species3.59E-03
85GO:0010019: chloroplast-nucleus signaling pathway3.97E-03
86GO:0042372: phylloquinone biosynthetic process3.97E-03
87GO:1901259: chloroplast rRNA processing3.97E-03
88GO:0017148: negative regulation of translation3.97E-03
89GO:0005975: carbohydrate metabolic process4.28E-03
90GO:0015693: magnesium ion transport4.68E-03
91GO:0048528: post-embryonic root development4.68E-03
92GO:0009772: photosynthetic electron transport in photosystem II4.68E-03
93GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.68E-03
94GO:1900057: positive regulation of leaf senescence4.68E-03
95GO:2000070: regulation of response to water deprivation5.44E-03
96GO:0010492: maintenance of shoot apical meristem identity5.44E-03
97GO:0005978: glycogen biosynthetic process5.44E-03
98GO:0006605: protein targeting5.44E-03
99GO:0006754: ATP biosynthetic process7.07E-03
100GO:0048507: meristem development7.07E-03
101GO:0055085: transmembrane transport7.65E-03
102GO:1900865: chloroplast RNA modification7.94E-03
103GO:0009750: response to fructose9.79E-03
104GO:0019684: photosynthesis, light reaction9.79E-03
105GO:0009073: aromatic amino acid family biosynthetic process9.79E-03
106GO:0043085: positive regulation of catalytic activity9.79E-03
107GO:1903507: negative regulation of nucleic acid-templated transcription9.79E-03
108GO:0006352: DNA-templated transcription, initiation9.79E-03
109GO:0016024: CDP-diacylglycerol biosynthetic process1.08E-02
110GO:0006810: transport1.17E-02
111GO:0009718: anthocyanin-containing compound biosynthetic process1.18E-02
112GO:0019253: reductive pentose-phosphate cycle1.28E-02
113GO:0006855: drug transmembrane transport1.30E-02
114GO:0005985: sucrose metabolic process1.39E-02
115GO:0071732: cellular response to nitric oxide1.39E-02
116GO:0006364: rRNA processing1.50E-02
117GO:0010025: wax biosynthetic process1.50E-02
118GO:0009735: response to cytokinin1.56E-02
119GO:0008299: isoprenoid biosynthetic process1.74E-02
120GO:0006418: tRNA aminoacylation for protein translation1.74E-02
121GO:0016114: terpenoid biosynthetic process1.86E-02
122GO:0035428: hexose transmembrane transport1.98E-02
123GO:2000022: regulation of jasmonic acid mediated signaling pathway1.98E-02
124GO:0006012: galactose metabolic process2.11E-02
125GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.11E-02
126GO:0055114: oxidation-reduction process2.15E-02
127GO:0045454: cell redox homeostasis2.22E-02
128GO:0009561: megagametogenesis2.24E-02
129GO:0000413: protein peptidyl-prolyl isomerization2.50E-02
130GO:0006869: lipid transport2.50E-02
131GO:0042335: cuticle development2.50E-02
132GO:0080022: primary root development2.50E-02
133GO:0046323: glucose import2.64E-02
134GO:0006662: glycerol ether metabolic process2.64E-02
135GO:0032259: methylation2.74E-02
136GO:0015986: ATP synthesis coupled proton transport2.78E-02
137GO:0010183: pollen tube guidance2.92E-02
138GO:0042744: hydrogen peroxide catabolic process3.05E-02
139GO:1901657: glycosyl compound metabolic process3.36E-02
140GO:0006633: fatty acid biosynthetic process3.36E-02
141GO:0030163: protein catabolic process3.36E-02
142GO:0071281: cellular response to iron ion3.36E-02
143GO:0009828: plant-type cell wall loosening3.52E-02
144GO:0009567: double fertilization forming a zygote and endosperm3.52E-02
145GO:0009451: RNA modification3.78E-02
146GO:0016311: dephosphorylation4.64E-02
147GO:0018298: protein-chromophore linkage4.81E-02
148GO:0009817: defense response to fungus, incompatible interaction4.81E-02
149GO:0010311: lateral root formation4.98E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
8GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
9GO:0004823: leucine-tRNA ligase activity0.00E+00
10GO:0009977: proton motive force dependent protein transmembrane transporter activity4.28E-06
11GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.28E-06
12GO:0043023: ribosomal large subunit binding3.40E-05
13GO:0008266: poly(U) RNA binding6.96E-05
14GO:0005528: FK506 binding1.15E-04
15GO:0004130: cytochrome-c peroxidase activity1.39E-04
16GO:0019843: rRNA binding1.52E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.07E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity3.07E-04
19GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.07E-04
20GO:0004425: indole-3-glycerol-phosphate synthase activity3.07E-04
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.07E-04
22GO:0010242: oxygen evolving activity3.07E-04
23GO:0004856: xylulokinase activity3.07E-04
24GO:0042586: peptide deformylase activity3.07E-04
25GO:0045485: omega-6 fatty acid desaturase activity3.07E-04
26GO:0016787: hydrolase activity3.76E-04
27GO:0015250: water channel activity6.52E-04
28GO:0000234: phosphoethanolamine N-methyltransferase activity6.71E-04
29GO:0004362: glutathione-disulfide reductase activity6.71E-04
30GO:0047746: chlorophyllase activity6.71E-04
31GO:0016868: intramolecular transferase activity, phosphotransferases6.71E-04
32GO:0033201: alpha-1,4-glucan synthase activity6.71E-04
33GO:0004312: fatty acid synthase activity6.71E-04
34GO:0016630: protochlorophyllide reductase activity6.71E-04
35GO:0008236: serine-type peptidase activity8.55E-04
36GO:0031072: heat shock protein binding9.50E-04
37GO:0004565: beta-galactosidase activity9.50E-04
38GO:0070402: NADPH binding1.09E-03
39GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.09E-03
40GO:0004373: glycogen (starch) synthase activity1.09E-03
41GO:0002161: aminoacyl-tRNA editing activity1.09E-03
42GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.09E-03
43GO:0004751: ribose-5-phosphate isomerase activity1.09E-03
44GO:0019201: nucleotide kinase activity1.56E-03
45GO:0016851: magnesium chelatase activity1.56E-03
46GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.56E-03
47GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.09E-03
48GO:0016279: protein-lysine N-methyltransferase activity2.09E-03
49GO:0001053: plastid sigma factor activity2.09E-03
50GO:0004045: aminoacyl-tRNA hydrolase activity2.09E-03
51GO:0016987: sigma factor activity2.09E-03
52GO:0009011: starch synthase activity2.09E-03
53GO:0043495: protein anchor2.09E-03
54GO:0008878: glucose-1-phosphate adenylyltransferase activity2.09E-03
55GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.20E-03
56GO:0003959: NADPH dehydrogenase activity2.67E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor2.67E-03
58GO:0016853: isomerase activity3.13E-03
59GO:0004332: fructose-bisphosphate aldolase activity3.30E-03
60GO:0042578: phosphoric ester hydrolase activity3.30E-03
61GO:0016688: L-ascorbate peroxidase activity3.30E-03
62GO:0004017: adenylate kinase activity3.97E-03
63GO:0019899: enzyme binding4.68E-03
64GO:0008312: 7S RNA binding5.44E-03
65GO:0004034: aldose 1-epimerase activity5.44E-03
66GO:0043022: ribosome binding5.44E-03
67GO:0016168: chlorophyll binding5.48E-03
68GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.07E-03
69GO:0030234: enzyme regulator activity8.84E-03
70GO:0008047: enzyme activator activity8.84E-03
71GO:0016491: oxidoreductase activity9.47E-03
72GO:0047372: acylglycerol lipase activity9.79E-03
73GO:0042802: identical protein binding1.05E-02
74GO:0015095: magnesium ion transmembrane transporter activity1.18E-02
75GO:0009982: pseudouridine synthase activity1.18E-02
76GO:0004022: alcohol dehydrogenase (NAD) activity1.18E-02
77GO:0003729: mRNA binding1.20E-02
78GO:0003723: RNA binding1.31E-02
79GO:0003954: NADH dehydrogenase activity1.62E-02
80GO:0004857: enzyme inhibitor activity1.62E-02
81GO:0003714: transcription corepressor activity1.62E-02
82GO:0043424: protein histidine kinase binding1.74E-02
83GO:0022891: substrate-specific transmembrane transporter activity2.11E-02
84GO:0051082: unfolded protein binding2.14E-02
85GO:0003756: protein disulfide isomerase activity2.24E-02
86GO:0047134: protein-disulfide reductase activity2.37E-02
87GO:0004812: aminoacyl-tRNA ligase activity2.37E-02
88GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.64E-02
89GO:0004791: thioredoxin-disulfide reductase activity2.78E-02
90GO:0005355: glucose transmembrane transporter activity2.78E-02
91GO:0010181: FMN binding2.78E-02
92GO:0050662: coenzyme binding2.78E-02
93GO:0004252: serine-type endopeptidase activity2.97E-02
94GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.36E-02
95GO:0005525: GTP binding3.70E-02
96GO:0005509: calcium ion binding4.44E-02
97GO:0102483: scopolin beta-glucosidase activity4.48E-02
98GO:0004721: phosphoprotein phosphatase activity4.48E-02
99GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.81E-02
100GO:0005515: protein binding4.92E-02
101GO:0015238: drug transmembrane transporter activity4.98E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0009507: chloroplast3.26E-71
4GO:0009534: chloroplast thylakoid1.22E-43
5GO:0009535: chloroplast thylakoid membrane3.24E-41
6GO:0009570: chloroplast stroma1.04E-37
7GO:0009941: chloroplast envelope2.19E-27
8GO:0009579: thylakoid5.50E-20
9GO:0009543: chloroplast thylakoid lumen4.77E-15
10GO:0031977: thylakoid lumen1.81E-14
11GO:0033281: TAT protein transport complex3.21E-08
12GO:0009654: photosystem II oxygen evolving complex5.32E-06
13GO:0010287: plastoglobule1.37E-05
14GO:0019898: extrinsic component of membrane2.58E-05
15GO:0009508: plastid chromosome5.74E-05
16GO:0031969: chloroplast membrane1.88E-04
17GO:0009533: chloroplast stromal thylakoid2.48E-04
18GO:0031361: integral component of thylakoid membrane3.07E-04
19GO:0043674: columella3.07E-04
20GO:0009515: granal stacked thylakoid3.07E-04
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.63E-04
22GO:0009295: nucleoid5.63E-04
23GO:0016020: membrane6.20E-04
24GO:0009706: chloroplast inner membrane6.70E-04
25GO:0043036: starch grain6.71E-04
26GO:0080085: signal recognition particle, chloroplast targeting6.71E-04
27GO:0031304: intrinsic component of mitochondrial inner membrane6.71E-04
28GO:0030093: chloroplast photosystem I6.71E-04
29GO:0030095: chloroplast photosystem II1.07E-03
30GO:0010007: magnesium chelatase complex1.09E-03
31GO:0042651: thylakoid membrane1.62E-03
32GO:0009544: chloroplast ATP synthase complex2.09E-03
33GO:0009526: plastid envelope2.09E-03
34GO:0055035: plastid thylakoid membrane2.67E-03
35GO:0009522: photosystem I3.13E-03
36GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.30E-03
37GO:0042807: central vacuole4.68E-03
38GO:0030529: intracellular ribonucleoprotein complex5.19E-03
39GO:0009501: amyloplast5.44E-03
40GO:0005840: ribosome6.07E-03
41GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.23E-03
42GO:0008180: COP9 signalosome7.07E-03
43GO:0042644: chloroplast nucleoid7.07E-03
44GO:0055028: cortical microtubule8.84E-03
45GO:0032040: small-subunit processome1.08E-02
46GO:0016021: integral component of membrane1.86E-02
47GO:0009523: photosystem II2.92E-02
48GO:0010319: stromule3.67E-02
49GO:0005887: integral component of plasma membrane4.21E-02
50GO:0019005: SCF ubiquitin ligase complex4.81E-02
<
Gene type



Gene DE type