Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
3GO:0043201: response to leucine0.00E+00
4GO:0080053: response to phenylalanine0.00E+00
5GO:0019427: acetyl-CoA biosynthetic process from acetate0.00E+00
6GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)0.00E+00
7GO:0080052: response to histidine0.00E+00
8GO:0019428: allantoin biosynthetic process0.00E+00
9GO:0051553: flavone biosynthetic process0.00E+00
10GO:0006182: cGMP biosynthetic process0.00E+00
11GO:0009620: response to fungus2.75E-07
12GO:0042742: defense response to bacterium3.95E-07
13GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine3.83E-06
14GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.22E-06
15GO:0006099: tricarboxylic acid cycle1.04E-05
16GO:0006952: defense response1.99E-05
17GO:0043069: negative regulation of programmed cell death2.55E-05
18GO:0006468: protein phosphorylation3.01E-05
19GO:0002239: response to oomycetes3.07E-05
20GO:0009682: induced systemic resistance3.26E-05
21GO:0009617: response to bacterium4.84E-05
22GO:0060548: negative regulation of cell death5.52E-05
23GO:0009751: response to salicylic acid6.32E-05
24GO:0080147: root hair cell development1.02E-04
25GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.74E-04
26GO:0009737: response to abscisic acid2.85E-04
27GO:0006102: isocitrate metabolic process2.87E-04
28GO:0001560: regulation of cell growth by extracellular stimulus2.89E-04
29GO:0019628: urate catabolic process2.89E-04
30GO:0006047: UDP-N-acetylglucosamine metabolic process2.89E-04
31GO:0042350: GDP-L-fucose biosynthetic process2.89E-04
32GO:0043547: positive regulation of GTPase activity2.89E-04
33GO:0051245: negative regulation of cellular defense response2.89E-04
34GO:0006569: tryptophan catabolic process2.89E-04
35GO:0055081: anion homeostasis2.89E-04
36GO:0002143: tRNA wobble position uridine thiolation2.89E-04
37GO:0043687: post-translational protein modification2.89E-04
38GO:0046244: salicylic acid catabolic process2.89E-04
39GO:0006144: purine nucleobase metabolic process2.89E-04
40GO:0009968: negative regulation of signal transduction2.89E-04
41GO:0006083: acetate metabolic process2.89E-04
42GO:0019276: UDP-N-acetylgalactosamine metabolic process2.89E-04
43GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine2.89E-04
44GO:0002229: defense response to oomycetes3.64E-04
45GO:0006032: chitin catabolic process5.88E-04
46GO:0010618: aerenchyma formation6.34E-04
47GO:0051645: Golgi localization6.34E-04
48GO:0006695: cholesterol biosynthetic process6.34E-04
49GO:0006212: uracil catabolic process6.34E-04
50GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.34E-04
51GO:0019483: beta-alanine biosynthetic process6.34E-04
52GO:0042939: tripeptide transport6.34E-04
53GO:0031349: positive regulation of defense response6.34E-04
54GO:0060151: peroxisome localization6.34E-04
55GO:0009684: indoleacetic acid biosynthetic process6.77E-04
56GO:0052544: defense response by callose deposition in cell wall6.77E-04
57GO:0015783: GDP-fucose transport1.03E-03
58GO:0006517: protein deglycosylation1.03E-03
59GO:0006011: UDP-glucose metabolic process1.03E-03
60GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.03E-03
61GO:0009062: fatty acid catabolic process1.03E-03
62GO:1900140: regulation of seedling development1.03E-03
63GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.03E-03
64GO:0051646: mitochondrion localization1.03E-03
65GO:0090436: leaf pavement cell development1.03E-03
66GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.03E-03
67GO:0072661: protein targeting to plasma membrane1.03E-03
68GO:0070588: calcium ion transmembrane transport1.10E-03
69GO:0000162: tryptophan biosynthetic process1.22E-03
70GO:0010150: leaf senescence1.34E-03
71GO:0009863: salicylic acid mediated signaling pathway1.35E-03
72GO:0006887: exocytosis1.36E-03
73GO:0009226: nucleotide-sugar biosynthetic process1.47E-03
74GO:0006612: protein targeting to membrane1.47E-03
75GO:0010148: transpiration1.47E-03
76GO:0006516: glycoprotein catabolic process1.47E-03
77GO:0051289: protein homotetramerization1.47E-03
78GO:0006882: cellular zinc ion homeostasis1.47E-03
79GO:0006515: misfolded or incompletely synthesized protein catabolic process1.47E-03
80GO:0000187: activation of MAPK activity1.47E-03
81GO:0016998: cell wall macromolecule catabolic process1.64E-03
82GO:0007166: cell surface receptor signaling pathway1.65E-03
83GO:0031348: negative regulation of defense response1.79E-03
84GO:0071456: cellular response to hypoxia1.79E-03
85GO:0048830: adventitious root development1.97E-03
86GO:0000460: maturation of 5.8S rRNA1.97E-03
87GO:0010363: regulation of plant-type hypersensitive response1.97E-03
88GO:0033356: UDP-L-arabinose metabolic process1.97E-03
89GO:0010188: response to microbial phytotoxin1.97E-03
90GO:0042938: dipeptide transport1.97E-03
91GO:0050832: defense response to fungus2.08E-03
92GO:0055114: oxidation-reduction process2.13E-03
93GO:0007165: signal transduction2.45E-03
94GO:0000304: response to singlet oxygen2.52E-03
95GO:0030041: actin filament polymerization2.52E-03
96GO:0018279: protein N-linked glycosylation via asparagine2.52E-03
97GO:0061025: membrane fusion2.87E-03
98GO:0009749: response to glucose3.08E-03
99GO:0006777: Mo-molybdopterin cofactor biosynthetic process3.11E-03
100GO:0000470: maturation of LSU-rRNA3.11E-03
101GO:0060918: auxin transport3.11E-03
102GO:0042176: regulation of protein catabolic process3.11E-03
103GO:0047484: regulation of response to osmotic stress3.11E-03
104GO:0009759: indole glucosinolate biosynthetic process3.11E-03
105GO:0010942: positive regulation of cell death3.11E-03
106GO:0010310: regulation of hydrogen peroxide metabolic process3.74E-03
107GO:2000067: regulation of root morphogenesis3.74E-03
108GO:0000911: cytokinesis by cell plate formation3.74E-03
109GO:0009612: response to mechanical stimulus3.74E-03
110GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.74E-03
111GO:0010555: response to mannitol3.74E-03
112GO:0030163: protein catabolic process3.75E-03
113GO:0016192: vesicle-mediated transport3.92E-03
114GO:0006904: vesicle docking involved in exocytosis4.24E-03
115GO:0071446: cellular response to salicylic acid stimulus4.41E-03
116GO:0016126: sterol biosynthetic process4.76E-03
117GO:0009787: regulation of abscisic acid-activated signaling pathway5.12E-03
118GO:0009850: auxin metabolic process5.12E-03
119GO:2000031: regulation of salicylic acid mediated signaling pathway5.87E-03
120GO:0009699: phenylpropanoid biosynthetic process5.87E-03
121GO:0007186: G-protein coupled receptor signaling pathway5.87E-03
122GO:0010120: camalexin biosynthetic process5.87E-03
123GO:0010497: plasmodesmata-mediated intercellular transport5.87E-03
124GO:0043562: cellular response to nitrogen levels5.87E-03
125GO:0009817: defense response to fungus, incompatible interaction6.21E-03
126GO:0008219: cell death6.21E-03
127GO:0009813: flavonoid biosynthetic process6.53E-03
128GO:0015780: nucleotide-sugar transport6.65E-03
129GO:0009821: alkaloid biosynthetic process6.65E-03
130GO:0006499: N-terminal protein myristoylation6.85E-03
131GO:0010119: regulation of stomatal movement7.19E-03
132GO:0071577: zinc II ion transmembrane transport7.48E-03
133GO:0090332: stomatal closure7.48E-03
134GO:2000280: regulation of root development7.48E-03
135GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.48E-03
136GO:0009688: abscisic acid biosynthetic process8.33E-03
137GO:0009641: shade avoidance8.33E-03
138GO:0019684: photosynthesis, light reaction9.22E-03
139GO:0009750: response to fructose9.22E-03
140GO:0006631: fatty acid metabolic process9.37E-03
141GO:0000266: mitochondrial fission1.01E-02
142GO:0008643: carbohydrate transport1.10E-02
143GO:0030048: actin filament-based movement1.11E-02
144GO:0006807: nitrogen compound metabolic process1.11E-02
145GO:0048467: gynoecium development1.21E-02
146GO:0010143: cutin biosynthetic process1.21E-02
147GO:0002237: response to molecule of bacterial origin1.21E-02
148GO:0031347: regulation of defense response1.23E-02
149GO:0042343: indole glucosinolate metabolic process1.31E-02
150GO:0010025: wax biosynthetic process1.41E-02
151GO:0006487: protein N-linked glycosylation1.52E-02
152GO:0006508: proteolysis1.60E-02
153GO:0098542: defense response to other organism1.75E-02
154GO:0048278: vesicle docking1.75E-02
155GO:0015992: proton transport1.75E-02
156GO:0019748: secondary metabolic process1.86E-02
157GO:0009814: defense response, incompatible interaction1.86E-02
158GO:0030433: ubiquitin-dependent ERAD pathway1.86E-02
159GO:0009625: response to insect1.98E-02
160GO:0009742: brassinosteroid mediated signaling pathway2.08E-02
161GO:0042127: regulation of cell proliferation2.10E-02
162GO:0009306: protein secretion2.10E-02
163GO:0015031: protein transport2.23E-02
164GO:0010051: xylem and phloem pattern formation2.35E-02
165GO:0010197: polar nucleus fusion2.48E-02
166GO:0010182: sugar mediated signaling pathway2.48E-02
167GO:0009409: response to cold2.48E-02
168GO:0048544: recognition of pollen2.61E-02
169GO:0006623: protein targeting to vacuole2.75E-02
170GO:0010183: pollen tube guidance2.75E-02
171GO:0009851: auxin biosynthetic process2.75E-02
172GO:0009753: response to jasmonic acid2.83E-02
173GO:0016132: brassinosteroid biosynthetic process2.88E-02
174GO:0000302: response to reactive oxygen species2.88E-02
175GO:0010193: response to ozone2.88E-02
176GO:0006635: fatty acid beta-oxidation2.88E-02
177GO:0019761: glucosinolate biosynthetic process3.02E-02
178GO:0010090: trichome morphogenesis3.16E-02
179GO:0000910: cytokinesis3.60E-02
180GO:0001666: response to hypoxia3.75E-02
181GO:0009615: response to virus3.75E-02
182GO:0010468: regulation of gene expression4.04E-02
183GO:0009627: systemic acquired resistance4.05E-02
184GO:0006906: vesicle fusion4.05E-02
185GO:0009414: response to water deprivation4.26E-02
186GO:0030244: cellulose biosynthetic process4.53E-02
187GO:0009651: response to salt stress4.66E-02
188GO:0048767: root hair elongation4.69E-02
189GO:0009832: plant-type cell wall biogenesis4.69E-02
RankGO TermAdjusted P value
1GO:0033759: flavone synthase activity0.00E+00
2GO:0061604: molybdopterin-synthase sulfurtransferase activity0.00E+00
3GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
4GO:0003837: beta-ureidopropionase activity0.00E+00
5GO:0004164: diphthine synthase activity0.00E+00
6GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
7GO:0009918: sterol delta7 reductase activity0.00E+00
8GO:0008843: endochitinase activity0.00E+00
9GO:0000247: C-8 sterol isomerase activity0.00E+00
10GO:0047750: cholestenol delta-isomerase activity0.00E+00
11GO:0061605: molybdopterin-synthase adenylyltransferase activity0.00E+00
12GO:0033971: hydroxyisourate hydrolase activity0.00E+00
13GO:0035885: exochitinase activity0.00E+00
14GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity0.00E+00
15GO:0047598: 7-dehydrocholesterol reductase activity0.00E+00
16GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity0.00E+00
17GO:0016301: kinase activity1.43E-06
18GO:0004656: procollagen-proline 4-dioxygenase activity2.96E-06
19GO:0005524: ATP binding9.14E-06
20GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors9.29E-06
21GO:0004449: isocitrate dehydrogenase (NAD+) activity3.07E-05
22GO:0004674: protein serine/threonine kinase activity4.32E-05
23GO:0004576: oligosaccharyl transferase activity5.52E-05
24GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity8.74E-05
25GO:0050577: GDP-L-fucose synthase activity2.89E-04
26GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.89E-04
27GO:0008809: carnitine racemase activity2.89E-04
28GO:0003987: acetate-CoA ligase activity2.89E-04
29GO:0004425: indole-3-glycerol-phosphate synthase activity2.89E-04
30GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.89E-04
31GO:0031957: very long-chain fatty acid-CoA ligase activity2.89E-04
32GO:0043021: ribonucleoprotein complex binding6.34E-04
33GO:0004775: succinate-CoA ligase (ADP-forming) activity6.34E-04
34GO:0030742: GTP-dependent protein binding6.34E-04
35GO:0042937: tripeptide transporter activity6.34E-04
36GO:0004776: succinate-CoA ligase (GDP-forming) activity6.34E-04
37GO:0004103: choline kinase activity6.34E-04
38GO:0004566: beta-glucuronidase activity6.34E-04
39GO:0005388: calcium-transporting ATPase activity8.76E-04
40GO:0016614: oxidoreductase activity, acting on CH-OH group of donors9.80E-04
41GO:0001664: G-protein coupled receptor binding1.03E-03
42GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.03E-03
43GO:0004148: dihydrolipoyl dehydrogenase activity1.03E-03
44GO:0070181: small ribosomal subunit rRNA binding1.03E-03
45GO:0031683: G-protein beta/gamma-subunit complex binding1.03E-03
46GO:0004383: guanylate cyclase activity1.03E-03
47GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.03E-03
48GO:0005457: GDP-fucose transmembrane transporter activity1.03E-03
49GO:0004190: aspartic-type endopeptidase activity1.10E-03
50GO:0031418: L-ascorbic acid binding1.35E-03
51GO:0005506: iron ion binding1.37E-03
52GO:0009678: hydrogen-translocating pyrophosphatase activity1.47E-03
53GO:0004792: thiosulfate sulfurtransferase activity1.47E-03
54GO:0010178: IAA-amino acid conjugate hydrolase activity1.47E-03
55GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.47E-03
56GO:0004165: dodecenoyl-CoA delta-isomerase activity1.47E-03
57GO:0004707: MAP kinase activity1.64E-03
58GO:0033612: receptor serine/threonine kinase binding1.64E-03
59GO:0042936: dipeptide transporter activity1.97E-03
60GO:0004031: aldehyde oxidase activity1.97E-03
61GO:0050302: indole-3-acetaldehyde oxidase activity1.97E-03
62GO:0043495: protein anchor1.97E-03
63GO:0004930: G-protein coupled receptor activity1.97E-03
64GO:0045431: flavonol synthase activity2.52E-03
65GO:0015301: anion:anion antiporter activity2.52E-03
66GO:0008641: small protein activating enzyme activity2.52E-03
67GO:0005452: inorganic anion exchanger activity2.52E-03
68GO:0017137: Rab GTPase binding2.52E-03
69GO:0005516: calmodulin binding2.60E-03
70GO:0004029: aldehyde dehydrogenase (NAD) activity3.11E-03
71GO:0016208: AMP binding3.11E-03
72GO:0050660: flavin adenine dinucleotide binding3.26E-03
73GO:0004672: protein kinase activity3.30E-03
74GO:0102391: decanoate--CoA ligase activity3.74E-03
75GO:0004012: phospholipid-translocating ATPase activity3.74E-03
76GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.74E-03
77GO:0005509: calcium ion binding3.99E-03
78GO:0004427: inorganic diphosphatase activity4.41E-03
79GO:0004467: long-chain fatty acid-CoA ligase activity4.41E-03
80GO:0052747: sinapyl alcohol dehydrogenase activity5.12E-03
81GO:0004708: MAP kinase kinase activity5.12E-03
82GO:0004714: transmembrane receptor protein tyrosine kinase activity5.12E-03
83GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen5.37E-03
84GO:0030247: polysaccharide binding5.61E-03
85GO:0008565: protein transporter activity5.78E-03
86GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.48E-03
87GO:0016844: strictosidine synthase activity7.48E-03
88GO:0005515: protein binding7.59E-03
89GO:0030234: enzyme regulator activity8.33E-03
90GO:0004568: chitinase activity8.33E-03
91GO:0045551: cinnamyl-alcohol dehydrogenase activity1.01E-02
92GO:0005484: SNAP receptor activity1.02E-02
93GO:0005262: calcium channel activity1.11E-02
94GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.11E-02
95GO:0003774: motor activity1.21E-02
96GO:0008061: chitin binding1.31E-02
97GO:0005385: zinc ion transmembrane transporter activity1.52E-02
98GO:0003954: NADH dehydrogenase activity1.52E-02
99GO:0046872: metal ion binding1.56E-02
100GO:0045735: nutrient reservoir activity1.63E-02
101GO:0016779: nucleotidyltransferase activity1.86E-02
102GO:0003779: actin binding1.90E-02
103GO:0016746: transferase activity, transferring acyl groups2.02E-02
104GO:0008514: organic anion transmembrane transporter activity2.10E-02
105GO:0030276: clathrin binding2.48E-02
106GO:0046873: metal ion transmembrane transporter activity2.48E-02
107GO:0003924: GTPase activity2.60E-02
108GO:0016853: isomerase activity2.61E-02
109GO:0050662: coenzyme binding2.61E-02
110GO:0005507: copper ion binding2.64E-02
111GO:0019825: oxygen binding2.64E-02
112GO:0009055: electron carrier activity2.83E-02
113GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.16E-02
114GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.45E-02
115GO:0008237: metallopeptidase activity3.45E-02
116GO:0051213: dioxygenase activity3.75E-02
117GO:0004806: triglyceride lipase activity4.21E-02
118GO:0004683: calmodulin-dependent protein kinase activity4.21E-02
119GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.53E-02
120GO:0005096: GTPase activator activity4.69E-02
RankGO TermAdjusted P value
1GO:0045252: oxoglutarate dehydrogenase complex0.00E+00
2GO:0005886: plasma membrane4.72E-10
3GO:0005783: endoplasmic reticulum1.69E-07
4GO:0016021: integral component of membrane1.99E-07
5GO:0008250: oligosaccharyltransferase complex8.74E-05
6GO:0005794: Golgi apparatus2.28E-04
7GO:0005911: cell-cell junction2.89E-04
8GO:0031234: extrinsic component of cytoplasmic side of plasma membrane2.89E-04
9GO:0009504: cell plate3.32E-04
10GO:0005774: vacuolar membrane4.10E-04
11GO:0030665: clathrin-coated vesicle membrane5.03E-04
12GO:0031304: intrinsic component of mitochondrial inner membrane6.34E-04
13GO:0070545: PeBoW complex6.34E-04
14GO:0005765: lysosomal membrane6.77E-04
15GO:0005802: trans-Golgi network8.54E-04
16GO:0005768: endosome1.13E-03
17GO:0005789: endoplasmic reticulum membrane1.17E-03
18GO:0070062: extracellular exosome1.47E-03
19GO:0030660: Golgi-associated vesicle membrane1.97E-03
20GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane1.97E-03
21GO:0005829: cytosol2.35E-03
22GO:0000145: exocyst3.52E-03
23GO:0030687: preribosome, large subunit precursor4.41E-03
24GO:0030131: clathrin adaptor complex5.12E-03
25GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.12E-03
26GO:0009514: glyoxysome5.87E-03
27GO:0031090: organelle membrane6.65E-03
28GO:0017119: Golgi transport complex8.33E-03
29GO:0016459: myosin complex8.33E-03
30GO:0008541: proteasome regulatory particle, lid subcomplex9.22E-03
31GO:0032040: small-subunit processome1.01E-02
32GO:0030176: integral component of endoplasmic reticulum membrane1.31E-02
33GO:0010008: endosome membrane1.68E-02
34GO:0005747: mitochondrial respiratory chain complex I1.68E-02
35GO:0005834: heterotrimeric G-protein complex1.74E-02
36GO:0005777: peroxisome1.92E-02
37GO:0009506: plasmodesma1.97E-02
38GO:0009505: plant-type cell wall2.17E-02
39GO:0000139: Golgi membrane2.48E-02
40GO:0019898: extrinsic component of membrane2.75E-02
41GO:0005887: integral component of plasma membrane3.79E-02
42GO:0005643: nuclear pore4.53E-02
<
Gene type



Gene DE type