Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52280

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0006223: uracil salvage0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0006642: triglyceride mobilization0.00E+00
8GO:0016553: base conversion or substitution editing0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0010394: homogalacturonan metabolic process0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0006633: fatty acid biosynthetic process1.88E-06
13GO:0032544: plastid translation2.29E-06
14GO:0009658: chloroplast organization8.92E-06
15GO:0042549: photosystem II stabilization4.69E-05
16GO:0010190: cytochrome b6f complex assembly4.69E-05
17GO:0042335: cuticle development7.02E-05
18GO:0010196: nonphotochemical quenching8.77E-05
19GO:0071482: cellular response to light stimulus1.42E-04
20GO:0009657: plastid organization1.42E-04
21GO:0071588: hydrogen peroxide mediated signaling pathway1.56E-04
22GO:0035344: hypoxanthine transport1.56E-04
23GO:0043489: RNA stabilization1.56E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process1.56E-04
25GO:0046166: glyceraldehyde-3-phosphate biosynthetic process1.56E-04
26GO:1904964: positive regulation of phytol biosynthetic process1.56E-04
27GO:0098721: uracil import across plasma membrane1.56E-04
28GO:0098702: adenine import across plasma membrane1.56E-04
29GO:0045488: pectin metabolic process1.56E-04
30GO:0098710: guanine import across plasma membrane1.56E-04
31GO:0015979: photosynthesis2.00E-04
32GO:0045036: protein targeting to chloroplast2.46E-04
33GO:0009773: photosynthetic electron transport in photosystem I2.86E-04
34GO:0009073: aromatic amino acid family biosynthetic process2.86E-04
35GO:0006352: DNA-templated transcription, initiation2.86E-04
36GO:1902326: positive regulation of chlorophyll biosynthetic process3.55E-04
37GO:0009662: etioplast organization3.55E-04
38GO:0006094: gluconeogenesis3.74E-04
39GO:0010143: cutin biosynthetic process4.23E-04
40GO:0010020: chloroplast fission4.23E-04
41GO:0010025: wax biosynthetic process5.28E-04
42GO:0032504: multicellular organism reproduction5.82E-04
43GO:0000913: preprophase band assembly5.82E-04
44GO:0010581: regulation of starch biosynthetic process5.82E-04
45GO:0019563: glycerol catabolic process5.82E-04
46GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition5.82E-04
47GO:0030865: cortical cytoskeleton organization5.82E-04
48GO:0031408: oxylipin biosynthetic process7.05E-04
49GO:0009735: response to cytokinin7.84E-04
50GO:0006241: CTP biosynthetic process8.33E-04
51GO:0006165: nucleoside diphosphate phosphorylation8.33E-04
52GO:0006424: glutamyl-tRNA aminoacylation8.33E-04
53GO:0006228: UTP biosynthetic process8.33E-04
54GO:2001141: regulation of RNA biosynthetic process8.33E-04
55GO:0006412: translation8.72E-04
56GO:0006096: glycolytic process9.04E-04
57GO:0051781: positive regulation of cell division1.10E-03
58GO:0006183: GTP biosynthetic process1.10E-03
59GO:0006546: glycine catabolic process1.10E-03
60GO:0044206: UMP salvage1.10E-03
61GO:0071483: cellular response to blue light1.10E-03
62GO:0000304: response to singlet oxygen1.40E-03
63GO:0032543: mitochondrial translation1.40E-03
64GO:0043097: pyrimidine nucleoside salvage1.40E-03
65GO:0010236: plastoquinone biosynthetic process1.40E-03
66GO:0045038: protein import into chloroplast thylakoid membrane1.40E-03
67GO:0006461: protein complex assembly1.40E-03
68GO:0009409: response to cold1.46E-03
69GO:0006555: methionine metabolic process1.72E-03
70GO:0006086: acetyl-CoA biosynthetic process from pyruvate1.72E-03
71GO:0006206: pyrimidine nucleobase metabolic process1.72E-03
72GO:0006014: D-ribose metabolic process1.72E-03
73GO:0010027: thylakoid membrane organization1.99E-03
74GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.06E-03
75GO:0030488: tRNA methylation2.06E-03
76GO:0010189: vitamin E biosynthetic process2.06E-03
77GO:0009854: oxidative photosynthetic carbon pathway2.06E-03
78GO:0010019: chloroplast-nucleus signaling pathway2.06E-03
79GO:0030497: fatty acid elongation2.42E-03
80GO:0006614: SRP-dependent cotranslational protein targeting to membrane2.42E-03
81GO:0006400: tRNA modification2.42E-03
82GO:0009817: defense response to fungus, incompatible interaction2.59E-03
83GO:0018298: protein-chromophore linkage2.59E-03
84GO:0008610: lipid biosynthetic process2.80E-03
85GO:0009631: cold acclimation2.99E-03
86GO:0019430: removal of superoxide radicals3.21E-03
87GO:0010233: phloem transport3.21E-03
88GO:0009637: response to blue light3.27E-03
89GO:0055114: oxidation-reduction process3.43E-03
90GO:0009051: pentose-phosphate shunt, oxidative branch3.63E-03
91GO:0006098: pentose-phosphate shunt3.63E-03
92GO:0035999: tetrahydrofolate interconversion4.06E-03
93GO:0042761: very long-chain fatty acid biosynthetic process4.06E-03
94GO:0010380: regulation of chlorophyll biosynthetic process4.06E-03
95GO:0010114: response to red light4.21E-03
96GO:0006535: cysteine biosynthetic process from serine4.52E-03
97GO:0006855: drug transmembrane transport4.91E-03
98GO:0000038: very long-chain fatty acid metabolic process4.99E-03
99GO:0043085: positive regulation of catalytic activity4.99E-03
100GO:0006415: translational termination4.99E-03
101GO:0006790: sulfur compound metabolic process5.48E-03
102GO:0009767: photosynthetic electron transport chain5.98E-03
103GO:0006006: glucose metabolic process5.98E-03
104GO:0006457: protein folding6.03E-03
105GO:0045454: cell redox homeostasis6.48E-03
106GO:0010207: photosystem II assembly6.50E-03
107GO:0019253: reductive pentose-phosphate cycle6.50E-03
108GO:0046686: response to cadmium ion6.82E-03
109GO:0090351: seedling development7.04E-03
110GO:0046854: phosphatidylinositol phosphorylation7.04E-03
111GO:0019344: cysteine biosynthetic process8.16E-03
112GO:0009116: nucleoside metabolic process8.16E-03
113GO:0006418: tRNA aminoacylation for protein translation8.74E-03
114GO:0009695: jasmonic acid biosynthetic process8.74E-03
115GO:0007017: microtubule-based process8.74E-03
116GO:0009768: photosynthesis, light harvesting in photosystem I8.74E-03
117GO:0008152: metabolic process9.58E-03
118GO:0006730: one-carbon metabolic process9.96E-03
119GO:0009411: response to UV1.06E-02
120GO:0040007: growth1.06E-02
121GO:0042744: hydrogen peroxide catabolic process1.15E-02
122GO:0016117: carotenoid biosynthetic process1.19E-02
123GO:0000226: microtubule cytoskeleton organization1.25E-02
124GO:0080022: primary root development1.25E-02
125GO:0010051: xylem and phloem pattern formation1.25E-02
126GO:0045489: pectin biosynthetic process1.32E-02
127GO:0010305: leaf vascular tissue pattern formation1.32E-02
128GO:0048868: pollen tube development1.32E-02
129GO:0019252: starch biosynthetic process1.46E-02
130GO:0008654: phospholipid biosynthetic process1.46E-02
131GO:0000302: response to reactive oxygen species1.54E-02
132GO:0016032: viral process1.61E-02
133GO:0032502: developmental process1.61E-02
134GO:0071805: potassium ion transmembrane transport1.84E-02
135GO:0001666: response to hypoxia1.99E-02
136GO:0042128: nitrate assimilation2.16E-02
137GO:0042254: ribosome biogenesis2.21E-02
138GO:0015995: chlorophyll biosynthetic process2.24E-02
139GO:0055085: transmembrane transport2.37E-02
140GO:0048481: plant ovule development2.41E-02
141GO:0009407: toxin catabolic process2.58E-02
142GO:0010218: response to far red light2.58E-02
143GO:0009853: photorespiration2.85E-02
144GO:0045087: innate immune response2.85E-02
145GO:0016051: carbohydrate biosynthetic process2.85E-02
146GO:0034599: cellular response to oxidative stress2.94E-02
147GO:0006631: fatty acid metabolic process3.22E-02
148GO:0042542: response to hydrogen peroxide3.32E-02
149GO:0006869: lipid transport3.53E-02
150GO:0009636: response to toxic substance3.71E-02
151GO:0032259: methylation3.79E-02
152GO:0006397: mRNA processing4.13E-02
153GO:0042742: defense response to bacterium4.22E-02
154GO:0009585: red, far-red light phototransduction4.22E-02
155GO:0006813: potassium ion transport4.22E-02
156GO:0048316: seed development4.86E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0046608: carotenoid isomerase activity0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
8GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0019843: rRNA binding3.72E-08
13GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.19E-06
14GO:0016987: sigma factor activity1.93E-05
15GO:0001053: plastid sigma factor activity1.93E-05
16GO:0004807: triose-phosphate isomerase activity1.56E-04
17GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity1.56E-04
18GO:0015208: guanine transmembrane transporter activity1.56E-04
19GO:0009496: plastoquinol--plastocyanin reductase activity1.56E-04
20GO:0015294: solute:cation symporter activity1.56E-04
21GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity1.56E-04
22GO:0004321: fatty-acyl-CoA synthase activity1.56E-04
23GO:0015207: adenine transmembrane transporter activity1.56E-04
24GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity1.56E-04
25GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.56E-04
26GO:0004047: aminomethyltransferase activity3.55E-04
27GO:0000774: adenyl-nucleotide exchange factor activity3.55E-04
28GO:0004802: transketolase activity3.55E-04
29GO:0050017: L-3-cyanoalanine synthase activity3.55E-04
30GO:0008266: poly(U) RNA binding4.23E-04
31GO:0051537: 2 iron, 2 sulfur cluster binding5.57E-04
32GO:0070330: aromatase activity5.82E-04
33GO:0050734: hydroxycinnamoyltransferase activity5.82E-04
34GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity5.82E-04
35GO:0002161: aminoacyl-tRNA editing activity5.82E-04
36GO:0030267: glyoxylate reductase (NADP) activity5.82E-04
37GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity5.82E-04
38GO:0016149: translation release factor activity, codon specific8.33E-04
39GO:0004550: nucleoside diphosphate kinase activity8.33E-04
40GO:0043023: ribosomal large subunit binding8.33E-04
41GO:0003735: structural constituent of ribosome9.08E-04
42GO:0004845: uracil phosphoribosyltransferase activity1.10E-03
43GO:0004345: glucose-6-phosphate dehydrogenase activity1.10E-03
44GO:0016836: hydro-lyase activity1.10E-03
45GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.10E-03
46GO:0004045: aminoacyl-tRNA hydrolase activity1.10E-03
47GO:0015210: uracil transmembrane transporter activity1.10E-03
48GO:0043495: protein anchor1.10E-03
49GO:0051082: unfolded protein binding1.14E-03
50GO:0016740: transferase activity1.29E-03
51GO:0009922: fatty acid elongase activity1.40E-03
52GO:0018685: alkane 1-monooxygenase activity1.40E-03
53GO:0003924: GTPase activity1.70E-03
54GO:0004332: fructose-bisphosphate aldolase activity1.72E-03
55GO:0004130: cytochrome-c peroxidase activity1.72E-03
56GO:0016688: L-ascorbate peroxidase activity1.72E-03
57GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.72E-03
58GO:0004124: cysteine synthase activity2.06E-03
59GO:0051920: peroxiredoxin activity2.06E-03
60GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.06E-03
61GO:0004849: uridine kinase activity2.06E-03
62GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.06E-03
63GO:0004747: ribokinase activity2.06E-03
64GO:0016168: chlorophyll binding2.11E-03
65GO:0005525: GTP binding2.18E-03
66GO:0019899: enzyme binding2.42E-03
67GO:0004620: phospholipase activity2.42E-03
68GO:0015238: drug transmembrane transporter activity2.72E-03
69GO:0016209: antioxidant activity2.80E-03
70GO:0008312: 7S RNA binding2.80E-03
71GO:0004033: aldo-keto reductase (NADP) activity2.80E-03
72GO:0008865: fructokinase activity2.80E-03
73GO:0042802: identical protein binding3.06E-03
74GO:0016207: 4-coumarate-CoA ligase activity3.63E-03
75GO:0003747: translation release factor activity3.63E-03
76GO:0008047: enzyme activator activity4.52E-03
77GO:0005198: structural molecule activity4.73E-03
78GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.91E-03
79GO:0000049: tRNA binding5.48E-03
80GO:0003899: DNA-directed 5'-3' RNA polymerase activity5.66E-03
81GO:0031072: heat shock protein binding5.98E-03
82GO:0042973: glucan endo-1,3-beta-D-glucosidase activity6.50E-03
83GO:0042803: protein homodimerization activity6.87E-03
84GO:0031409: pigment binding7.59E-03
85GO:0102336: 3-oxo-arachidoyl-CoA synthase activity7.59E-03
86GO:0102337: 3-oxo-cerotoyl-CoA synthase activity7.59E-03
87GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity7.59E-03
88GO:0016874: ligase activity7.59E-03
89GO:0005528: FK506 binding8.16E-03
90GO:0051536: iron-sulfur cluster binding8.16E-03
91GO:0016746: transferase activity, transferring acyl groups8.30E-03
92GO:0051087: chaperone binding8.74E-03
93GO:0015079: potassium ion transmembrane transporter activity8.74E-03
94GO:0019706: protein-cysteine S-palmitoyltransferase activity9.34E-03
95GO:0022891: substrate-specific transmembrane transporter activity1.06E-02
96GO:0004812: aminoacyl-tRNA ligase activity1.19E-02
97GO:0015297: antiporter activity1.33E-02
98GO:0005215: transporter activity1.38E-02
99GO:0004791: thioredoxin-disulfide reductase activity1.39E-02
100GO:0050662: coenzyme binding1.39E-02
101GO:0005515: protein binding1.65E-02
102GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.68E-02
103GO:0016791: phosphatase activity1.76E-02
104GO:0016491: oxidoreductase activity1.80E-02
105GO:0008483: transaminase activity1.84E-02
106GO:0005200: structural constituent of cytoskeleton1.84E-02
107GO:0008168: methyltransferase activity2.09E-02
108GO:0004601: peroxidase activity2.17E-02
109GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.32E-02
110GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding2.32E-02
111GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.41E-02
112GO:0046872: metal ion binding2.64E-02
113GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.67E-02
114GO:0005507: copper ion binding2.73E-02
115GO:0000987: core promoter proximal region sequence-specific DNA binding2.94E-02
116GO:0050661: NADP binding3.13E-02
117GO:0051539: 4 iron, 4 sulfur cluster binding3.13E-02
118GO:0004364: glutathione transferase activity3.32E-02
119GO:0016787: hydrolase activity3.68E-02
120GO:0009055: electron carrier activity4.24E-02
121GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.86E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009507: chloroplast2.75E-41
3GO:0009570: chloroplast stroma4.30E-29
4GO:0009941: chloroplast envelope8.11E-25
5GO:0009579: thylakoid1.25E-18
6GO:0009535: chloroplast thylakoid membrane7.22E-15
7GO:0009534: chloroplast thylakoid8.58E-12
8GO:0009543: chloroplast thylakoid lumen3.72E-08
9GO:0031977: thylakoid lumen4.49E-08
10GO:0042651: thylakoid membrane3.10E-05
11GO:0009523: photosystem II9.77E-05
12GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex1.56E-04
13GO:0009547: plastid ribosome1.56E-04
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.73E-04
15GO:0045298: tubulin complex1.73E-04
16GO:0030981: cortical microtubule cytoskeleton3.55E-04
17GO:0080085: signal recognition particle, chloroplast targeting3.55E-04
18GO:0030095: chloroplast photosystem II4.23E-04
19GO:0000312: plastid small ribosomal subunit4.23E-04
20GO:0009654: photosystem II oxygen evolving complex6.43E-04
21GO:0009532: plastid stroma7.05E-04
22GO:0031969: chloroplast membrane9.50E-04
23GO:0016020: membrane1.03E-03
24GO:0009536: plastid1.20E-03
25GO:0019898: extrinsic component of membrane1.30E-03
26GO:0009512: cytochrome b6f complex1.40E-03
27GO:0030529: intracellular ribonucleoprotein complex1.99E-03
28GO:0009533: chloroplast stromal thylakoid2.42E-03
29GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.21E-03
30GO:0046658: anchored component of plasma membrane3.22E-03
31GO:0005840: ribosome3.41E-03
32GO:0022626: cytosolic ribosome3.81E-03
33GO:0000311: plastid large ribosomal subunit5.48E-03
34GO:0030659: cytoplasmic vesicle membrane6.50E-03
35GO:0030076: light-harvesting complex7.04E-03
36GO:0043234: protein complex7.59E-03
37GO:0009706: chloroplast inner membrane8.06E-03
38GO:0015935: small ribosomal subunit9.34E-03
39GO:0005623: cell1.04E-02
40GO:0009522: photosystem I1.39E-02
41GO:0010319: stromule1.84E-02
42GO:0022627: cytosolic small ribosomal subunit1.85E-02
43GO:0009707: chloroplast outer membrane2.41E-02
44GO:0005874: microtubule2.60E-02
45GO:0015934: large ribosomal subunit2.67E-02
46GO:0031225: anchored component of membrane3.06E-02
47GO:0005802: trans-Golgi network3.16E-02
48GO:0005618: cell wall3.36E-02
49GO:0005768: endosome3.71E-02
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Gene type



Gene DE type