Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0042493: response to drug0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0010207: photosystem II assembly2.16E-06
6GO:0006412: translation3.34E-06
7GO:0010206: photosystem II repair4.89E-05
8GO:0043489: RNA stabilization6.74E-05
9GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process6.74E-05
10GO:0006434: seryl-tRNA aminoacylation6.74E-05
11GO:0009735: response to cytokinin8.72E-05
12GO:0009658: chloroplast organization1.07E-04
13GO:0010143: cutin biosynthetic process1.31E-04
14GO:0043255: regulation of carbohydrate biosynthetic process1.62E-04
15GO:0010541: acropetal auxin transport1.62E-04
16GO:0001736: establishment of planar polarity1.62E-04
17GO:0010024: phytochromobilin biosynthetic process1.62E-04
18GO:0043039: tRNA aminoacylation1.62E-04
19GO:0015979: photosynthesis1.95E-04
20GO:0010160: formation of animal organ boundary2.75E-04
21GO:0006518: peptide metabolic process2.75E-04
22GO:0045493: xylan catabolic process2.75E-04
23GO:0006788: heme oxidation2.75E-04
24GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.77E-04
25GO:0009958: positive gravitropism3.82E-04
26GO:0009650: UV protection3.98E-04
27GO:1901332: negative regulation of lateral root development3.98E-04
28GO:0051513: regulation of monopolar cell growth3.98E-04
29GO:0051639: actin filament network formation3.98E-04
30GO:0080170: hydrogen peroxide transmembrane transport3.98E-04
31GO:0043481: anthocyanin accumulation in tissues in response to UV light3.98E-04
32GO:0009734: auxin-activated signaling pathway5.10E-04
33GO:0030104: water homeostasis5.32E-04
34GO:0051764: actin crosslink formation5.32E-04
35GO:0045490: pectin catabolic process5.47E-04
36GO:0009828: plant-type cell wall loosening5.67E-04
37GO:0015995: chlorophyll biosynthetic process7.86E-04
38GO:0060918: auxin transport8.23E-04
39GO:0010337: regulation of salicylic acid metabolic process8.23E-04
40GO:0042549: photosystem II stabilization8.23E-04
41GO:0010311: lateral root formation9.07E-04
42GO:0042254: ribosome biogenesis9.62E-04
43GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)9.79E-04
44GO:0009926: auxin polar transport1.38E-03
45GO:0032544: plastid translation1.50E-03
46GO:0009664: plant-type cell wall organization1.72E-03
47GO:0006032: chitin catabolic process2.10E-03
48GO:0048829: root cap development2.10E-03
49GO:0018119: peptidyl-cysteine S-nitrosylation2.31E-03
50GO:0048765: root hair cell differentiation2.31E-03
51GO:0010015: root morphogenesis2.31E-03
52GO:0009733: response to auxin2.49E-03
53GO:0008361: regulation of cell size2.53E-03
54GO:0016024: CDP-diacylglycerol biosynthetic process2.53E-03
55GO:0010540: basipetal auxin transport2.99E-03
56GO:0010053: root epidermal cell differentiation3.23E-03
57GO:0009825: multidimensional cell growth3.23E-03
58GO:0010167: response to nitrate3.23E-03
59GO:0051017: actin filament bundle assembly3.73E-03
60GO:2000377: regulation of reactive oxygen species metabolic process3.73E-03
61GO:0000027: ribosomal large subunit assembly3.73E-03
62GO:0009790: embryo development3.79E-03
63GO:0003333: amino acid transmembrane transport4.26E-03
64GO:0016998: cell wall macromolecule catabolic process4.26E-03
65GO:0007005: mitochondrion organization4.53E-03
66GO:0009411: response to UV4.81E-03
67GO:0048443: stamen development5.09E-03
68GO:0042335: cuticle development5.68E-03
69GO:0080022: primary root development5.68E-03
70GO:0034220: ion transmembrane transport5.68E-03
71GO:0000413: protein peptidyl-prolyl isomerization5.68E-03
72GO:0009826: unidimensional cell growth6.65E-03
73GO:0009630: gravitropism7.24E-03
74GO:0030163: protein catabolic process7.57E-03
75GO:0009639: response to red or far red light7.90E-03
76GO:0010027: thylakoid membrane organization8.93E-03
77GO:0010411: xyloglucan metabolic process1.00E-02
78GO:0042742: defense response to bacterium1.01E-02
79GO:0048481: plant ovule development1.08E-02
80GO:0030244: cellulose biosynthetic process1.08E-02
81GO:0009817: defense response to fungus, incompatible interaction1.08E-02
82GO:0010218: response to far red light1.15E-02
83GO:0048527: lateral root development1.19E-02
84GO:0009631: cold acclimation1.19E-02
85GO:0006865: amino acid transport1.23E-02
86GO:0016042: lipid catabolic process1.23E-02
87GO:0045087: innate immune response1.27E-02
88GO:0009637: response to blue light1.27E-02
89GO:0030001: metal ion transport1.39E-02
90GO:0009640: photomorphogenesis1.52E-02
91GO:0006855: drug transmembrane transport1.70E-02
92GO:0009809: lignin biosynthetic process1.88E-02
93GO:0009740: gibberellic acid mediated signaling pathway2.31E-02
94GO:0042545: cell wall modification2.37E-02
95GO:0035556: intracellular signal transduction2.38E-02
96GO:0009624: response to nematode2.42E-02
97GO:0006396: RNA processing2.47E-02
98GO:0007165: signal transduction2.55E-02
99GO:0055085: transmembrane transport2.86E-02
100GO:0009793: embryo development ending in seed dormancy2.90E-02
101GO:0040008: regulation of growth3.45E-02
102GO:0007623: circadian rhythm3.57E-02
103GO:0009451: RNA modification3.63E-02
104GO:0009739: response to gibberellin3.86E-02
105GO:0010468: regulation of gene expression4.04E-02
106GO:0009414: response to water deprivation4.44E-02
107GO:0071555: cell wall organization4.55E-02
108GO:0009651: response to salt stress4.58E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0019843: rRNA binding1.08E-11
5GO:0003735: structural constituent of ribosome5.58E-07
6GO:0004828: serine-tRNA ligase activity6.74E-05
7GO:0008266: poly(U) RNA binding1.31E-04
8GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.36E-04
9GO:0005528: FK506 binding1.88E-04
10GO:0050734: hydroxycinnamoyltransferase activity2.75E-04
11GO:0030570: pectate lyase activity2.77E-04
12GO:0016851: magnesium chelatase activity3.98E-04
13GO:0043023: ribosomal large subunit binding3.98E-04
14GO:0016829: lyase activity4.01E-04
15GO:0009044: xylan 1,4-beta-xylosidase activity5.32E-04
16GO:0004392: heme oxygenase (decyclizing) activity5.32E-04
17GO:0046556: alpha-L-arabinofuranosidase activity5.32E-04
18GO:0010011: auxin binding5.32E-04
19GO:0010328: auxin influx transmembrane transporter activity5.32E-04
20GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.37E-04
21GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity8.23E-04
22GO:0004366: glycerol-3-phosphate O-acyltransferase activity8.23E-04
23GO:0004568: chitinase activity2.10E-03
24GO:0031072: heat shock protein binding2.76E-03
25GO:0010329: auxin efflux transmembrane transporter activity2.76E-03
26GO:0004252: serine-type endopeptidase activity3.61E-03
27GO:0004707: MAP kinase activity4.26E-03
28GO:0003756: protein disulfide isomerase activity5.09E-03
29GO:0016788: hydrolase activity, acting on ester bonds7.04E-03
30GO:0051015: actin filament binding7.57E-03
31GO:0016791: phosphatase activity7.90E-03
32GO:0015250: water channel activity8.93E-03
33GO:0052689: carboxylic ester hydrolase activity9.47E-03
34GO:0030247: polysaccharide binding1.00E-02
35GO:0008236: serine-type peptidase activity1.04E-02
36GO:0004222: metalloendopeptidase activity1.15E-02
37GO:0003993: acid phosphatase activity1.31E-02
38GO:0015293: symporter activity1.65E-02
39GO:0045330: aspartyl esterase activity2.02E-02
40GO:0015171: amino acid transmembrane transporter activity2.02E-02
41GO:0004650: polygalacturonase activity2.26E-02
42GO:0030599: pectinesterase activity2.31E-02
43GO:0051082: unfolded protein binding2.42E-02
44GO:0016746: transferase activity, transferring acyl groups2.47E-02
45GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.98E-02
46GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.39E-02
47GO:0046910: pectinesterase inhibitor activity3.39E-02
48GO:0005509: calcium ion binding4.20E-02
RankGO TermAdjusted P value
1GO:0009570: chloroplast stroma4.56E-18
2GO:0009579: thylakoid4.38E-15
3GO:0009507: chloroplast2.85E-14
4GO:0009543: chloroplast thylakoid lumen1.08E-11
5GO:0031977: thylakoid lumen1.55E-11
6GO:0009941: chloroplast envelope1.27E-10
7GO:0009535: chloroplast thylakoid membrane3.32E-10
8GO:0009534: chloroplast thylakoid3.04E-09
9GO:0005840: ribosome7.50E-06
10GO:0016020: membrane3.74E-05
11GO:0009547: plastid ribosome6.74E-05
12GO:0043674: columella6.74E-05
13GO:0005576: extracellular region1.71E-04
14GO:0009654: photosystem II oxygen evolving complex2.09E-04
15GO:0010007: magnesium chelatase complex2.75E-04
16GO:0005618: cell wall3.11E-04
17GO:0032432: actin filament bundle3.98E-04
18GO:0019898: extrinsic component of membrane4.39E-04
19GO:0009505: plant-type cell wall6.24E-04
20GO:0042807: central vacuole1.14E-03
21GO:0009986: cell surface1.14E-03
22GO:0009533: chloroplast stromal thylakoid1.14E-03
23GO:0008180: COP9 signalosome1.69E-03
24GO:0005884: actin filament2.31E-03
25GO:0000311: plastid large ribosomal subunit2.53E-03
26GO:0000312: plastid small ribosomal subunit2.99E-03
27GO:0030095: chloroplast photosystem II2.99E-03
28GO:0022626: cytosolic ribosome3.89E-03
29GO:0005768: endosome8.80E-03
30GO:0030529: intracellular ribonucleoprotein complex8.93E-03
31GO:0022625: cytosolic large ribosomal subunit9.02E-03
32GO:0019005: SCF ubiquitin ligase complex1.08E-02
33GO:0048046: apoplast1.47E-02
34GO:0000502: proteasome complex1.88E-02
35GO:0009705: plant-type vacuole membrane3.57E-02
36GO:0005802: trans-Golgi network3.61E-02
37GO:0022627: cytosolic small ribosomal subunit4.35E-02
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Gene type



Gene DE type