GO Enrichment Analysis of Co-expressed Genes with
AT1G50900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006580: ethanolamine metabolic process | 0.00E+00 |
| 2 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0015979: photosynthesis | 1.31E-14 |
| 5 | GO:0009735: response to cytokinin | 2.25E-07 |
| 6 | GO:0032544: plastid translation | 8.55E-07 |
| 7 | GO:0090391: granum assembly | 2.15E-06 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 3.94E-06 |
| 9 | GO:0010207: photosystem II assembly | 5.95E-06 |
| 10 | GO:0006412: translation | 6.71E-06 |
| 11 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.42E-05 |
| 12 | GO:0042254: ribosome biogenesis | 3.00E-05 |
| 13 | GO:0009772: photosynthetic electron transport in photosystem II | 4.66E-05 |
| 14 | GO:0010196: nonphotochemical quenching | 4.66E-05 |
| 15 | GO:0010027: thylakoid membrane organization | 8.29E-05 |
| 16 | GO:0010206: photosystem II repair | 9.49E-05 |
| 17 | GO:0009090: homoserine biosynthetic process | 1.04E-04 |
| 18 | GO:0034337: RNA folding | 1.04E-04 |
| 19 | GO:0009773: photosynthetic electron transport in photosystem I | 1.61E-04 |
| 20 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.86E-04 |
| 21 | GO:0019752: carboxylic acid metabolic process | 2.44E-04 |
| 22 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.44E-04 |
| 23 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.44E-04 |
| 24 | GO:1902448: positive regulation of shade avoidance | 4.05E-04 |
| 25 | GO:0009306: protein secretion | 5.34E-04 |
| 26 | GO:1901332: negative regulation of lateral root development | 5.82E-04 |
| 27 | GO:0006986: response to unfolded protein | 5.82E-04 |
| 28 | GO:0009067: aspartate family amino acid biosynthetic process | 5.82E-04 |
| 29 | GO:0071484: cellular response to light intensity | 5.82E-04 |
| 30 | GO:0009102: biotin biosynthetic process | 5.82E-04 |
| 31 | GO:0051085: chaperone mediated protein folding requiring cofactor | 5.82E-04 |
| 32 | GO:0015986: ATP synthesis coupled proton transport | 7.18E-04 |
| 33 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 7.73E-04 |
| 34 | GO:0010438: cellular response to sulfur starvation | 9.77E-04 |
| 35 | GO:0009759: indole glucosinolate biosynthetic process | 1.19E-03 |
| 36 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.19E-03 |
| 37 | GO:1901259: chloroplast rRNA processing | 1.43E-03 |
| 38 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.43E-03 |
| 39 | GO:0017148: negative regulation of translation | 1.43E-03 |
| 40 | GO:0009088: threonine biosynthetic process | 1.43E-03 |
| 41 | GO:0006605: protein targeting | 1.93E-03 |
| 42 | GO:0048564: photosystem I assembly | 1.93E-03 |
| 43 | GO:0008610: lipid biosynthetic process | 1.93E-03 |
| 44 | GO:0006754: ATP biosynthetic process | 2.49E-03 |
| 45 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.79E-03 |
| 46 | GO:0009086: methionine biosynthetic process | 2.79E-03 |
| 47 | GO:0006535: cysteine biosynthetic process from serine | 3.10E-03 |
| 48 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.10E-03 |
| 49 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.42E-03 |
| 50 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.42E-03 |
| 51 | GO:0002213: defense response to insect | 3.75E-03 |
| 52 | GO:0000162: tryptophan biosynthetic process | 5.18E-03 |
| 53 | GO:0019344: cysteine biosynthetic process | 5.56E-03 |
| 54 | GO:0000027: ribosomal large subunit assembly | 5.56E-03 |
| 55 | GO:0016114: terpenoid biosynthetic process | 6.35E-03 |
| 56 | GO:0016998: cell wall macromolecule catabolic process | 6.35E-03 |
| 57 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 7.18E-03 |
| 58 | GO:0080022: primary root development | 8.49E-03 |
| 59 | GO:0000413: protein peptidyl-prolyl isomerization | 8.49E-03 |
| 60 | GO:0006520: cellular amino acid metabolic process | 8.95E-03 |
| 61 | GO:0000302: response to reactive oxygen species | 1.04E-02 |
| 62 | GO:0009828: plant-type cell wall loosening | 1.19E-02 |
| 63 | GO:0009567: double fertilization forming a zygote and endosperm | 1.19E-02 |
| 64 | GO:0006457: protein folding | 1.20E-02 |
| 65 | GO:0016126: sterol biosynthetic process | 1.35E-02 |
| 66 | GO:0010411: xyloglucan metabolic process | 1.51E-02 |
| 67 | GO:0010311: lateral root formation | 1.68E-02 |
| 68 | GO:0009793: embryo development ending in seed dormancy | 1.81E-02 |
| 69 | GO:0034599: cellular response to oxidative stress | 1.98E-02 |
| 70 | GO:0042546: cell wall biogenesis | 2.37E-02 |
| 71 | GO:0009664: plant-type cell wall organization | 2.70E-02 |
| 72 | GO:0006364: rRNA processing | 2.84E-02 |
| 73 | GO:0006486: protein glycosylation | 2.84E-02 |
| 74 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.91E-02 |
| 75 | GO:0009409: response to cold | 3.09E-02 |
| 76 | GO:0009742: brassinosteroid mediated signaling pathway | 3.81E-02 |
| 77 | GO:0045893: positive regulation of transcription, DNA-templated | 4.62E-02 |
| 78 | GO:0042744: hydrogen peroxide catabolic process | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 3 | GO:0019843: rRNA binding | 1.26E-10 |
| 4 | GO:0016851: magnesium chelatase activity | 9.60E-09 |
| 5 | GO:0003735: structural constituent of ribosome | 6.52E-08 |
| 6 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.04E-04 |
| 7 | GO:0004163: diphosphomevalonate decarboxylase activity | 1.04E-04 |
| 8 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.04E-04 |
| 9 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 1.04E-04 |
| 10 | GO:0004412: homoserine dehydrogenase activity | 2.44E-04 |
| 11 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.02E-04 |
| 12 | GO:0005528: FK506 binding | 3.40E-04 |
| 13 | GO:0051087: chaperone binding | 3.76E-04 |
| 14 | GO:0043023: ribosomal large subunit binding | 5.82E-04 |
| 15 | GO:0004072: aspartate kinase activity | 5.82E-04 |
| 16 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 6.70E-04 |
| 17 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 7.73E-04 |
| 18 | GO:0030170: pyridoxal phosphate binding | 8.62E-04 |
| 19 | GO:0005509: calcium ion binding | 1.02E-03 |
| 20 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.19E-03 |
| 21 | GO:0004130: cytochrome-c peroxidase activity | 1.19E-03 |
| 22 | GO:0004124: cysteine synthase activity | 1.43E-03 |
| 23 | GO:0016831: carboxy-lyase activity | 1.67E-03 |
| 24 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 1.93E-03 |
| 25 | GO:0030234: enzyme regulator activity | 3.10E-03 |
| 26 | GO:0008378: galactosyltransferase activity | 3.75E-03 |
| 27 | GO:0031072: heat shock protein binding | 4.09E-03 |
| 28 | GO:0051082: unfolded protein binding | 4.64E-03 |
| 29 | GO:0043424: protein histidine kinase binding | 5.95E-03 |
| 30 | GO:0003756: protein disulfide isomerase activity | 7.61E-03 |
| 31 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.04E-02 |
| 32 | GO:0008483: transaminase activity | 1.24E-02 |
| 33 | GO:0016788: hydrolase activity, acting on ester bonds | 1.26E-02 |
| 34 | GO:0016597: amino acid binding | 1.29E-02 |
| 35 | GO:0016168: chlorophyll binding | 1.40E-02 |
| 36 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.51E-02 |
| 37 | GO:0008236: serine-type peptidase activity | 1.57E-02 |
| 38 | GO:0016787: hydrolase activity | 1.61E-02 |
| 39 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.62E-02 |
| 40 | GO:0042803: protein homodimerization activity | 1.93E-02 |
| 41 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.11E-02 |
| 42 | GO:0050661: NADP binding | 2.11E-02 |
| 43 | GO:0004185: serine-type carboxypeptidase activity | 2.30E-02 |
| 44 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.43E-02 |
| 45 | GO:0003777: microtubule motor activity | 3.06E-02 |
| 46 | GO:0003729: mRNA binding | 3.47E-02 |
| 47 | GO:0016887: ATPase activity | 3.53E-02 |
| 48 | GO:0016746: transferase activity, transferring acyl groups | 3.73E-02 |
| 49 | GO:0008026: ATP-dependent helicase activity | 3.81E-02 |
| 50 | GO:0016758: transferase activity, transferring hexosyl groups | 4.21E-02 |
| 51 | GO:0004252: serine-type endopeptidase activity | 4.62E-02 |
| 52 | GO:0008565: protein transporter activity | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.91E-42 |
| 3 | GO:0009570: chloroplast stroma | 2.97E-32 |
| 4 | GO:0009579: thylakoid | 7.84E-31 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.49E-28 |
| 6 | GO:0009534: chloroplast thylakoid | 2.39E-27 |
| 7 | GO:0009941: chloroplast envelope | 1.86E-24 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.83E-23 |
| 9 | GO:0031977: thylakoid lumen | 3.18E-16 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 1.81E-09 |
| 11 | GO:0010007: magnesium chelatase complex | 1.96E-09 |
| 12 | GO:0005840: ribosome | 2.42E-09 |
| 13 | GO:0019898: extrinsic component of membrane | 1.55E-08 |
| 14 | GO:0030095: chloroplast photosystem II | 6.53E-08 |
| 15 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.42E-05 |
| 16 | GO:0030093: chloroplast photosystem I | 2.44E-04 |
| 17 | GO:0009536: plastid | 3.92E-04 |
| 18 | GO:0009509: chromoplast | 4.05E-04 |
| 19 | GO:0033281: TAT protein transport complex | 4.05E-04 |
| 20 | GO:0009522: photosystem I | 7.18E-04 |
| 21 | GO:0009544: chloroplast ATP synthase complex | 7.73E-04 |
| 22 | GO:0009295: nucleoid | 1.04E-03 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 1.67E-03 |
| 24 | GO:0009538: photosystem I reaction center | 1.93E-03 |
| 25 | GO:0032040: small-subunit processome | 3.75E-03 |
| 26 | GO:0009508: plastid chromosome | 4.09E-03 |
| 27 | GO:0000312: plastid small ribosomal subunit | 4.44E-03 |
| 28 | GO:0010287: plastoglobule | 5.49E-03 |
| 29 | GO:0015935: small ribosomal subunit | 6.35E-03 |
| 30 | GO:0005759: mitochondrial matrix | 7.28E-03 |
| 31 | GO:0009523: photosystem II | 9.90E-03 |
| 32 | GO:0010319: stromule | 1.24E-02 |
| 33 | GO:0016020: membrane | 1.55E-02 |
| 34 | GO:0015934: large ribosomal subunit | 1.80E-02 |
| 35 | GO:0009706: chloroplast inner membrane | 3.66E-02 |
| 36 | GO:0005618: cell wall | 3.99E-02 |