co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G50450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019284: L-methionine salvage from S-adenosylmethionine	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0090042: tubulin deacetylation	0.00E+00
4	GO:0010196: nonphotochemical quenching	1.25E-05
5	GO:0071482: cellular response to light stimulus	2.16E-05
6	GO:0006352: DNA-templated transcription, initiation	4.81E-05
7	GO:0009662: etioplast organization	1.13E-04
8	GO:0030865: cortical cytoskeleton organization	1.95E-04
9	GO:0000913: preprophase band assembly	1.95E-04
10	GO:2001141: regulation of RNA biosynthetic process	2.85E-04
11	GO:0016556: mRNA modification	2.85E-04
12	GO:0071483: cellular response to blue light	3.84E-04
13	GO:0051781: positive regulation of cell division	3.84E-04
14	GO:0006461: protein complex assembly	4.88E-04
15	GO:0010190: cytochrome b6f complex assembly	5.98E-04
16	GO:0042549: photosystem II stabilization	5.98E-04
17	GO:0010019: chloroplast-nucleus signaling pathway	7.13E-04
18	GO:0019509: L-methionine salvage from methylthioadenosine	7.13E-04
19	GO:0045454: cell redox homeostasis	8.26E-04
20	GO:0032259: methylation	1.01E-03
21	GO:0032544: plastid translation	1.09E-03
22	GO:0009657: plastid organization	1.09E-03
23	GO:0000373: Group II intron splicing	1.22E-03
24	GO:0006098: pentose-phosphate shunt	1.22E-03
25	GO:0048316: seed development	1.38E-03
26	GO:0006535: cysteine biosynthetic process from serine	1.51E-03
27	GO:0045036: protein targeting to chloroplast	1.51E-03
28	GO:0009073: aromatic amino acid family biosynthetic process	1.66E-03
29	GO:0006415: translational termination	1.66E-03
30	GO:0006094: gluconeogenesis	1.98E-03
31	GO:0009767: photosynthetic electron transport chain	1.98E-03
32	GO:0005986: sucrose biosynthetic process	1.98E-03
33	GO:0010207: photosystem II assembly	2.14E-03
34	GO:0090351: seedling development	2.31E-03
35	GO:0019344: cysteine biosynthetic process	2.67E-03
36	GO:0016575: histone deacetylation	2.85E-03
37	GO:0016226: iron-sulfur cluster assembly	3.23E-03
38	GO:0016117: carotenoid biosynthetic process	3.83E-03
39	GO:0000226: microtubule cytoskeleton organization	4.04E-03
40	GO:0009658: chloroplast organization	4.21E-03
41	GO:0016032: viral process	5.13E-03
42	GO:0001666: response to hypoxia	6.32E-03
43	GO:0010027: thylakoid membrane organization	6.32E-03
44	GO:0042128: nitrate assimilation	6.82E-03
45	GO:0015995: chlorophyll biosynthetic process	7.08E-03
46	GO:0008152: metabolic process	8.47E-03
47	GO:0009637: response to blue light	8.96E-03
48	GO:0046686: response to cadmium ion	9.34E-03
49	GO:0010114: response to red light	1.07E-02
50	GO:0006855: drug transmembrane transport	1.19E-02
51	GO:0006096: glycolytic process	1.49E-02
52	GO:0045893: positive regulation of transcription, DNA-templated	1.57E-02
53	GO:0006457: protein folding	1.77E-02
54	GO:0006413: translational initiation	2.38E-02
55	GO:0040008: regulation of growth	2.42E-02
56	GO:0009451: RNA modification	2.54E-02
57	GO:0008380: RNA splicing	2.84E-02
58	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.23E-02
59	GO:0080167: response to karrikin	3.98E-02
60	GO:0015979: photosynthesis	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0046570: methylthioribulose 1-phosphate dehydratase activity	0.00E+00
2	GO:0043874: acireductone synthase activity	0.00E+00
3	GO:0043014: alpha-tubulin binding	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
6	GO:0046608: carotenoid isomerase activity	0.00E+00
7	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
8	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
9	GO:0051721: protein phosphatase 2A binding	0.00E+00
10	GO:0042903: tubulin deacetylase activity	0.00E+00
11	GO:0001053: plastid sigma factor activity	2.38E-06
12	GO:0016987: sigma factor activity	2.38E-06
13	GO:0009496: plastoquinol--plastocyanin reductase activity	4.60E-05
14	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	4.60E-05
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.60E-05
16	GO:0050017: L-3-cyanoalanine synthase activity	1.13E-04
17	GO:0004047: aminomethyltransferase activity	1.13E-04
18	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.95E-04
19	GO:0050307: sucrose-phosphate phosphatase activity	1.95E-04
20	GO:0048487: beta-tubulin binding	2.85E-04
21	GO:0016149: translation release factor activity, codon specific	2.85E-04
22	GO:0004045: aminoacyl-tRNA hydrolase activity	3.84E-04
23	GO:0008168: methyltransferase activity	4.81E-04
24	GO:0000287: magnesium ion binding	4.92E-04
25	GO:0004332: fructose-bisphosphate aldolase activity	5.98E-04
26	GO:0004124: cysteine synthase activity	7.13E-04
27	GO:0051537: 2 iron, 2 sulfur cluster binding	9.27E-04
28	GO:0004033: aldo-keto reductase (NADP) activity	9.57E-04
29	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	1.09E-03
30	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.14E-03
31	GO:0003747: translation release factor activity	1.22E-03
32	GO:0051082: unfolded protein binding	1.60E-03
33	GO:0031072: heat shock protein binding	1.98E-03
34	GO:0004407: histone deacetylase activity	2.67E-03
35	GO:0005528: FK506 binding	2.67E-03
36	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.37E-03
37	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	7.34E-03
38	GO:0015238: drug transmembrane transporter activity	7.87E-03
39	GO:0009055: electron carrier activity	8.24E-03
40	GO:0004519: endonuclease activity	8.35E-03
41	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	8.41E-03
42	GO:0000987: core promoter proximal region sequence-specific DNA binding	9.25E-03
43	GO:0043621: protein self-association	1.13E-02
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.19E-02
45	GO:0016787: hydrolase activity	1.40E-02
46	GO:0016874: ligase activity	1.63E-02
47	GO:0016740: transferase activity	1.67E-02
48	GO:0030170: pyridoxal phosphate binding	2.14E-02
49	GO:0015297: antiporter activity	2.42E-02
50	GO:0003743: translation initiation factor activity	2.80E-02
51	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.97E-02
52	GO:0005215: transporter activity	3.07E-02
53	GO:0050660: flavin adenine dinucleotide binding	3.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.03E-18
2	GO:0009535: chloroplast thylakoid membrane	5.99E-09
3	GO:0009534: chloroplast thylakoid	8.17E-09
4	GO:0009941: chloroplast envelope	1.95E-07
5	GO:0031969: chloroplast membrane	6.32E-05
6	GO:0030981: cortical microtubule cytoskeleton	1.13E-04
7	GO:0009543: chloroplast thylakoid lumen	1.86E-04
8	GO:0009523: photosystem II	2.68E-04
9	GO:0009570: chloroplast stroma	3.01E-04
10	GO:0009579: thylakoid	4.41E-04
11	GO:0009512: cytochrome b6f complex	4.88E-04
12	GO:0031977: thylakoid lumen	7.97E-04
13	GO:0009533: chloroplast stromal thylakoid	8.33E-04
14	GO:0030095: chloroplast photosystem II	2.14E-03
15	GO:0042651: thylakoid membrane	2.85E-03
16	GO:0009532: plastid stroma	3.04E-03
17	GO:0030529: intracellular ribonucleoprotein complex	6.32E-03
18	GO:0009707: chloroplast outer membrane	7.60E-03
19	GO:0043231: intracellular membrane-bounded organelle	8.47E-03
20	GO:0005623: cell	2.03E-02
21	GO:0009536: plastid	3.40E-02
22	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.65E-02