co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G48920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0007141: male meiosis I	0.00E+00
3	GO:0002191: cap-dependent translational initiation	0.00E+00
4	GO:0000731: DNA synthesis involved in DNA repair	0.00E+00
5	GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	0.00E+00
6	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
7	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
8	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
9	GO:0007160: cell-matrix adhesion	0.00E+00
10	GO:0043633: polyadenylation-dependent RNA catabolic process	0.00E+00
11	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
12	GO:0048312: intracellular distribution of mitochondria	0.00E+00
13	GO:0006446: regulation of translational initiation	2.03E-05
14	GO:0006413: translational initiation	4.83E-05
15	GO:0006014: D-ribose metabolic process	5.77E-05
16	GO:0006364: rRNA processing	1.03E-04
17	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.77E-04
18	GO:0010265: SCF complex assembly	1.77E-04
19	GO:1902466: positive regulation of histone H3-K27 trimethylation	1.77E-04
20	GO:0010365: positive regulation of ethylene biosynthetic process	1.77E-04
21	GO:0019567: arabinose biosynthetic process	1.77E-04
22	GO:0006422: aspartyl-tRNA aminoacylation	1.77E-04
23	GO:0000266: mitochondrial fission	3.93E-04
24	GO:0019374: galactolipid metabolic process	4.01E-04
25	GO:0007584: response to nutrient	4.01E-04
26	GO:0030010: establishment of cell polarity	4.01E-04
27	GO:0060149: negative regulation of posttranscriptional gene silencing	4.01E-04
28	GO:0050684: regulation of mRNA processing	4.01E-04
29	GO:0009225: nucleotide-sugar metabolic process	5.64E-04
30	GO:1900055: regulation of leaf senescence	6.55E-04
31	GO:0032784: regulation of DNA-templated transcription, elongation	6.55E-04
32	GO:0042780: tRNA 3'-end processing	6.55E-04
33	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	6.55E-04
34	GO:2000034: regulation of seed maturation	6.55E-04
35	GO:0000027: ribosomal large subunit assembly	6.94E-04
36	GO:0009399: nitrogen fixation	9.34E-04
37	GO:0072583: clathrin-dependent endocytosis	9.34E-04
38	GO:0031936: negative regulation of chromatin silencing	9.34E-04
39	GO:0000187: activation of MAPK activity	9.34E-04
40	GO:0010116: positive regulation of abscisic acid biosynthetic process	9.34E-04
41	GO:2001289: lipid X metabolic process	9.34E-04
42	GO:0072334: UDP-galactose transmembrane transport	9.34E-04
43	GO:0000460: maturation of 5.8S rRNA	1.24E-03
44	GO:0010107: potassium ion import	1.24E-03
45	GO:0006542: glutamine biosynthetic process	1.24E-03
46	GO:0045227: capsule polysaccharide biosynthetic process	1.24E-03
47	GO:0033320: UDP-D-xylose biosynthetic process	1.24E-03
48	GO:0033358: UDP-L-arabinose biosynthetic process	1.24E-03
49	GO:0009553: embryo sac development	1.37E-03
50	GO:0006623: protein targeting to vacuole	1.55E-03
51	GO:0019252: starch biosynthetic process	1.55E-03
52	GO:0006090: pyruvate metabolic process	1.57E-03
53	GO:0005513: detection of calcium ion	1.57E-03
54	GO:0001731: formation of translation preinitiation complex	1.94E-03
55	GO:0006751: glutathione catabolic process	1.94E-03
56	GO:0016070: RNA metabolic process	1.94E-03
57	GO:0048232: male gamete generation	1.94E-03
58	GO:0000470: maturation of LSU-rRNA	1.94E-03
59	GO:0042732: D-xylose metabolic process	1.94E-03
60	GO:0009612: response to mechanical stimulus	2.32E-03
61	GO:0048280: vesicle fusion with Golgi apparatus	2.32E-03
62	GO:2000037: regulation of stomatal complex patterning	2.32E-03
63	GO:0080111: DNA demethylation	2.74E-03
64	GO:1902074: response to salt	2.74E-03
65	GO:0010150: leaf senescence	2.84E-03
66	GO:0006102: isocitrate metabolic process	3.17E-03
67	GO:0016559: peroxisome fission	3.17E-03
68	GO:0006644: phospholipid metabolic process	3.17E-03
69	GO:0009880: embryonic pattern specification	3.63E-03
70	GO:0060321: acceptance of pollen	3.63E-03
71	GO:0006261: DNA-dependent DNA replication	3.63E-03
72	GO:0010093: specification of floral organ identity	3.63E-03
73	GO:0009821: alkaloid biosynthetic process	4.10E-03
74	GO:0051865: protein autoubiquitination	4.10E-03
75	GO:0009051: pentose-phosphate shunt, oxidative branch	4.10E-03
76	GO:0042761: very long-chain fatty acid biosynthetic process	4.60E-03
77	GO:0006896: Golgi to vacuole transport	5.11E-03
78	GO:0051026: chiasma assembly	5.11E-03
79	GO:0010629: negative regulation of gene expression	5.11E-03
80	GO:0006913: nucleocytoplasmic transport	5.65E-03
81	GO:0030148: sphingolipid biosynthetic process	5.65E-03
82	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	6.09E-03
83	GO:0006260: DNA replication	6.09E-03
84	GO:0045037: protein import into chloroplast stroma	6.20E-03
85	GO:0006108: malate metabolic process	6.78E-03
86	GO:0010229: inflorescence development	6.78E-03
87	GO:0006417: regulation of translation	7.51E-03
88	GO:0080188: RNA-directed DNA methylation	7.98E-03
89	GO:0010030: positive regulation of seed germination	7.98E-03
90	GO:0045454: cell redox homeostasis	8.16E-03
91	GO:2000377: regulation of reactive oxygen species metabolic process	9.26E-03
92	GO:0046686: response to cadmium ion	9.36E-03
93	GO:0006418: tRNA aminoacylation for protein translation	9.92E-03
94	GO:0006825: copper ion transport	9.92E-03
95	GO:0009742: brassinosteroid mediated signaling pathway	1.02E-02
96	GO:0051260: protein homooligomerization	1.06E-02
97	GO:0061077: chaperone-mediated protein folding	1.06E-02
98	GO:0009814: defense response, incompatible interaction	1.13E-02
99	GO:0007131: reciprocal meiotic recombination	1.13E-02
100	GO:0080092: regulation of pollen tube growth	1.13E-02
101	GO:0010227: floral organ abscission	1.20E-02
102	GO:0006012: galactose metabolic process	1.20E-02
103	GO:0009561: megagametogenesis	1.27E-02
104	GO:0042147: retrograde transport, endosome to Golgi	1.35E-02
105	GO:0000413: protein peptidyl-prolyl isomerization	1.43E-02
106	GO:0010087: phloem or xylem histogenesis	1.43E-02
107	GO:0010118: stomatal movement	1.43E-02
108	GO:0006633: fatty acid biosynthetic process	1.52E-02
109	GO:0042752: regulation of circadian rhythm	1.58E-02
110	GO:0010183: pollen tube guidance	1.66E-02
111	GO:0009749: response to glucose	1.66E-02
112	GO:0002229: defense response to oomycetes	1.75E-02
113	GO:0006891: intra-Golgi vesicle-mediated transport	1.75E-02
114	GO:0009630: gravitropism	1.83E-02
115	GO:0007264: small GTPase mediated signal transduction	1.83E-02
116	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.88E-02
117	GO:0010252: auxin homeostasis	2.00E-02
118	GO:0006310: DNA recombination	2.00E-02
119	GO:0009615: response to virus	2.27E-02
120	GO:0042128: nitrate assimilation	2.45E-02
121	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
122	GO:0016049: cell growth	2.64E-02
123	GO:0008219: cell death	2.74E-02
124	GO:0009832: plant-type cell wall biogenesis	2.84E-02
125	GO:0007049: cell cycle	2.90E-02
126	GO:0006499: N-terminal protein myristoylation	2.94E-02
127	GO:0009723: response to ethylene	3.00E-02
128	GO:0048527: lateral root development	3.04E-02
129	GO:0010119: regulation of stomatal movement	3.04E-02
130	GO:0048366: leaf development	3.06E-02
131	GO:0009867: jasmonic acid mediated signaling pathway	3.24E-02
132	GO:0016051: carbohydrate biosynthetic process	3.24E-02
133	GO:0006099: tricarboxylic acid cycle	3.35E-02
134	GO:0006839: mitochondrial transport	3.56E-02
135	GO:0006631: fatty acid metabolic process	3.67E-02
136	GO:0006897: endocytosis	3.67E-02
137	GO:0009744: response to sucrose	3.88E-02
138	GO:0051707: response to other organism	3.88E-02
139	GO:0006886: intracellular protein transport	3.97E-02
140	GO:0000209: protein polyubiquitination	4.00E-02
141	GO:0000165: MAPK cascade	4.45E-02
142	GO:0006486: protein glycosylation	4.80E-02
143	GO:0009736: cytokinin-activated signaling pathway	4.80E-02
144	GO:0006397: mRNA processing	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0050220: prostaglandin-E synthase activity	0.00E+00
2	GO:0098808: mRNA cap binding	0.00E+00
3	GO:0016504: peptidase activator activity	0.00E+00
4	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
5	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
6	GO:0070577: lysine-acetylated histone binding	0.00E+00
7	GO:0000166: nucleotide binding	3.62E-08
8	GO:0003743: translation initiation factor activity	7.92E-05
9	GO:0004747: ribokinase activity	8.05E-05
10	GO:0008865: fructokinase activity	1.37E-04
11	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.77E-04
12	GO:0019707: protein-cysteine S-acyltransferase activity	1.77E-04
13	GO:0042134: rRNA primary transcript binding	1.77E-04
14	GO:0032050: clathrin heavy chain binding	1.77E-04
15	GO:0004815: aspartate-tRNA ligase activity	1.77E-04
16	GO:0004177: aminopeptidase activity	3.42E-04
17	GO:0045140: inositol phosphoceramide synthase activity	4.01E-04
18	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	4.01E-04
19	GO:0019829: cation-transporting ATPase activity	6.55E-04
20	GO:0042781: 3'-tRNA processing endoribonuclease activity	6.55E-04
21	GO:0016805: dipeptidase activity	6.55E-04
22	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	6.55E-04
23	GO:0005524: ATP binding	7.81E-04
24	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.34E-04
25	GO:0070628: proteasome binding	1.24E-03
26	GO:0004470: malic enzyme activity	1.24E-03
27	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.24E-03
28	GO:0050373: UDP-arabinose 4-epimerase activity	1.24E-03
29	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.24E-03
30	GO:0008948: oxaloacetate decarboxylase activity	1.57E-03
31	GO:0004040: amidase activity	1.57E-03
32	GO:0004356: glutamate-ammonia ligase activity	1.57E-03
33	GO:0005459: UDP-galactose transmembrane transporter activity	1.57E-03
34	GO:0048040: UDP-glucuronate decarboxylase activity	1.94E-03
35	GO:0102391: decanoate--CoA ligase activity	2.32E-03
36	GO:0003978: UDP-glucose 4-epimerase activity	2.32E-03
37	GO:0070403: NAD+ binding	2.32E-03
38	GO:0030515: snoRNA binding	2.74E-03
39	GO:0004620: phospholipase activity	2.74E-03
40	GO:0004467: long-chain fatty acid-CoA ligase activity	2.74E-03
41	GO:0008235: metalloexopeptidase activity	2.74E-03
42	GO:0004708: MAP kinase kinase activity	3.17E-03
43	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.17E-03
44	GO:0008312: 7S RNA binding	3.17E-03
45	GO:0030145: manganese ion binding	3.57E-03
46	GO:0005375: copper ion transmembrane transporter activity	3.63E-03
47	GO:0003724: RNA helicase activity	3.63E-03
48	GO:0005267: potassium channel activity	3.63E-03
49	GO:0008417: fucosyltransferase activity	4.10E-03
50	GO:0016887: ATPase activity	4.37E-03
51	GO:0047617: acyl-CoA hydrolase activity	4.60E-03
52	GO:0030955: potassium ion binding	4.60E-03
53	GO:0016844: strictosidine synthase activity	4.60E-03
54	GO:0004743: pyruvate kinase activity	4.60E-03
55	GO:0016301: kinase activity	5.13E-03
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.87E-03
57	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.78E-03
58	GO:0061630: ubiquitin protein ligase activity	6.92E-03
59	GO:0003887: DNA-directed DNA polymerase activity	8.61E-03
60	GO:0005528: FK506 binding	9.26E-03
61	GO:0004674: protein serine/threonine kinase activity	9.64E-03
62	GO:0015035: protein disulfide oxidoreductase activity	9.95E-03
63	GO:0008026: ATP-dependent helicase activity	1.02E-02
64	GO:0033612: receptor serine/threonine kinase binding	1.06E-02
65	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.06E-02
66	GO:0008408: 3'-5' exonuclease activity	1.06E-02
67	GO:0016779: nucleotidyltransferase activity	1.13E-02
68	GO:0009055: electron carrier activity	1.16E-02
69	GO:0047134: protein-disulfide reductase activity	1.35E-02
70	GO:0004812: aminoacyl-tRNA ligase activity	1.35E-02
71	GO:0008536: Ran GTPase binding	1.50E-02
72	GO:0004791: thioredoxin-disulfide reductase activity	1.58E-02
73	GO:0004872: receptor activity	1.66E-02
74	GO:0003824: catalytic activity	1.79E-02
75	GO:0016791: phosphatase activity	2.00E-02
76	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.09E-02
77	GO:0008375: acetylglucosaminyltransferase activity	2.45E-02
78	GO:0046982: protein heterodimerization activity	2.55E-02
79	GO:0004721: phosphoprotein phosphatase activity	2.55E-02
80	GO:0004004: ATP-dependent RNA helicase activity	2.55E-02
81	GO:0003682: chromatin binding	2.75E-02
82	GO:0003729: mRNA binding	2.82E-02
83	GO:0005096: GTPase activator activity	2.84E-02
84	GO:0000149: SNARE binding	3.45E-02
85	GO:0042393: histone binding	3.56E-02
86	GO:0005484: SNAP receptor activity	3.88E-02
87	GO:0005525: GTP binding	4.08E-02
88	GO:0035091: phosphatidylinositol binding	4.11E-02
89	GO:0004722: protein serine/threonine phosphatase activity	4.21E-02
90	GO:0005198: structural molecule activity	4.22E-02
91	GO:0051287: NAD binding	4.45E-02
92	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0055087: Ski complex	0.00E+00
3	GO:0005829: cytosol	9.77E-10
4	GO:0005794: Golgi apparatus	3.48E-06
5	GO:0031902: late endosome membrane	5.08E-05
6	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.73E-04
7	GO:0000138: Golgi trans cisterna	1.77E-04
8	GO:0043625: delta DNA polymerase complex	1.77E-04
9	GO:0005730: nucleolus	2.58E-04
10	GO:0030125: clathrin vesicle coat	2.95E-04
11	GO:0000176: nuclear exosome (RNase complex)	6.55E-04
12	GO:0005802: trans-Golgi network	7.28E-04
13	GO:0031461: cullin-RING ubiquitin ligase complex	9.34E-04
14	GO:0005783: endoplasmic reticulum	1.09E-03
15	GO:0030140: trans-Golgi network transport vesicle	1.94E-03
16	GO:0016282: eukaryotic 43S preinitiation complex	1.94E-03
17	GO:0032580: Golgi cisterna membrane	2.00E-03
18	GO:0033290: eukaryotic 48S preinitiation complex	2.32E-03
19	GO:0030173: integral component of Golgi membrane	2.32E-03
20	GO:0000794: condensed nuclear chromosome	2.74E-03
21	GO:0030687: preribosome, large subunit precursor	2.74E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	3.17E-03
23	GO:0030131: clathrin adaptor complex	3.17E-03
24	GO:0005680: anaphase-promoting complex	4.10E-03
25	GO:0005819: spindle	4.27E-03
26	GO:0030665: clathrin-coated vesicle membrane	4.60E-03
27	GO:0017119: Golgi transport complex	5.11E-03
28	GO:0005886: plasma membrane	5.71E-03
29	GO:0032040: small-subunit processome	6.20E-03
30	GO:0030176: integral component of endoplasmic reticulum membrane	7.98E-03
31	GO:0005795: Golgi stack	7.98E-03
32	GO:0005769: early endosome	8.61E-03
33	GO:0043234: protein complex	8.61E-03
34	GO:0005789: endoplasmic reticulum membrane	9.05E-03
35	GO:0005741: mitochondrial outer membrane	1.06E-02
36	GO:0005905: clathrin-coated pit	1.06E-02
37	GO:0005839: proteasome core complex	1.06E-02
38	GO:0009524: phragmoplast	1.28E-02
39	GO:0005774: vacuolar membrane	1.32E-02
40	GO:0005768: endosome	1.33E-02
41	GO:0000790: nuclear chromatin	1.35E-02
42	GO:0005770: late endosome	1.50E-02
43	GO:0031965: nuclear membrane	1.66E-02
44	GO:0005778: peroxisomal membrane	2.09E-02
45	GO:0000151: ubiquitin ligase complex	2.74E-02
46	GO:0000325: plant-type vacuole	3.04E-02
47	GO:0016021: integral component of membrane	3.07E-02
48	GO:0000786: nucleosome	3.14E-02
49	GO:0005737: cytoplasm	3.17E-02
50	GO:0009506: plasmodesma	3.33E-02
51	GO:0031201: SNARE complex	3.67E-02
52	GO:0005743: mitochondrial inner membrane	4.40E-02
53	GO:0005622: intracellular	4.49E-02