Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G48450

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
4GO:0034337: RNA folding0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0000372: Group I intron splicing0.00E+00
10GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
11GO:0015979: photosynthesis2.14E-09
12GO:0010196: nonphotochemical quenching5.14E-08
13GO:0009773: photosynthetic electron transport in photosystem I8.10E-07
14GO:0010027: thylakoid membrane organization3.22E-06
15GO:1902326: positive regulation of chlorophyll biosynthetic process4.35E-06
16GO:0018298: protein-chromophore linkage6.47E-06
17GO:0009735: response to cytokinin8.77E-06
18GO:0090391: granum assembly1.55E-05
19GO:0010025: wax biosynthetic process1.00E-04
20GO:0009631: cold acclimation1.34E-04
21GO:0042549: photosystem II stabilization1.41E-04
22GO:0055085: transmembrane transport1.57E-04
23GO:0006400: tRNA modification2.51E-04
24GO:0042335: cuticle development2.82E-04
25GO:0000481: maturation of 5S rRNA3.09E-04
26GO:0065002: intracellular protein transmembrane transport3.09E-04
27GO:0006106: fumarate metabolic process3.09E-04
28GO:0071588: hydrogen peroxide mediated signaling pathway3.09E-04
29GO:0070509: calcium ion import3.09E-04
30GO:0007263: nitric oxide mediated signal transduction3.09E-04
31GO:0043489: RNA stabilization3.09E-04
32GO:0043953: protein transport by the Tat complex3.09E-04
33GO:0008610: lipid biosynthetic process3.17E-04
34GO:0032544: plastid translation3.89E-04
35GO:0071482: cellular response to light stimulus3.89E-04
36GO:0000373: Group II intron splicing4.68E-04
37GO:0010205: photoinhibition5.53E-04
38GO:0042761: very long-chain fatty acid biosynthetic process5.53E-04
39GO:0009662: etioplast organization6.76E-04
40GO:0030388: fructose 1,6-bisphosphate metabolic process6.76E-04
41GO:0010289: homogalacturonan biosynthetic process6.76E-04
42GO:0010275: NAD(P)H dehydrogenase complex assembly6.76E-04
43GO:0035304: regulation of protein dephosphorylation6.76E-04
44GO:0043255: regulation of carbohydrate biosynthetic process6.76E-04
45GO:0080005: photosystem stoichiometry adjustment6.76E-04
46GO:0010115: regulation of abscisic acid biosynthetic process6.76E-04
47GO:1900871: chloroplast mRNA modification6.76E-04
48GO:0015995: chlorophyll biosynthetic process8.13E-04
49GO:0006094: gluconeogenesis9.61E-04
50GO:0010207: photosystem II assembly1.08E-03
51GO:0051604: protein maturation1.10E-03
52GO:1902448: positive regulation of shade avoidance1.10E-03
53GO:0006000: fructose metabolic process1.10E-03
54GO:0006518: peptide metabolic process1.10E-03
55GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.10E-03
56GO:0006833: water transport1.34E-03
57GO:0006636: unsaturated fatty acid biosynthetic process1.34E-03
58GO:2001141: regulation of RNA biosynthetic process1.57E-03
59GO:0009152: purine ribonucleotide biosynthetic process1.57E-03
60GO:0046653: tetrahydrofolate metabolic process1.57E-03
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.57E-03
62GO:0080170: hydrogen peroxide transmembrane transport1.57E-03
63GO:1901332: negative regulation of lateral root development1.57E-03
64GO:0010088: phloem development1.57E-03
65GO:0009768: photosynthesis, light harvesting in photosystem I1.64E-03
66GO:0010021: amylopectin biosynthetic process2.11E-03
67GO:0010109: regulation of photosynthesis2.11E-03
68GO:0009765: photosynthesis, light harvesting2.11E-03
69GO:0006109: regulation of carbohydrate metabolic process2.11E-03
70GO:0045727: positive regulation of translation2.11E-03
71GO:0015994: chlorophyll metabolic process2.11E-03
72GO:0071369: cellular response to ethylene stimulus2.15E-03
73GO:0008152: metabolic process2.23E-03
74GO:0045038: protein import into chloroplast thylakoid membrane2.69E-03
75GO:0006461: protein complex assembly2.69E-03
76GO:2000762: regulation of phenylpropanoid metabolic process2.69E-03
77GO:0016120: carotene biosynthetic process2.69E-03
78GO:0006564: L-serine biosynthetic process2.69E-03
79GO:0034220: ion transmembrane transport2.73E-03
80GO:0009658: chloroplast organization3.03E-03
81GO:0006561: proline biosynthetic process3.32E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.32E-03
83GO:0000470: maturation of LSU-rRNA3.32E-03
84GO:0009913: epidermal cell differentiation3.32E-03
85GO:0006655: phosphatidylglycerol biosynthetic process3.32E-03
86GO:0010190: cytochrome b6f complex assembly3.32E-03
87GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.32E-03
88GO:0010337: regulation of salicylic acid metabolic process3.32E-03
89GO:0009409: response to cold3.42E-03
90GO:0030488: tRNA methylation4.00E-03
91GO:0010019: chloroplast-nucleus signaling pathway4.00E-03
92GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.00E-03
93GO:1901259: chloroplast rRNA processing4.00E-03
94GO:0080167: response to karrikin4.21E-03
95GO:0015693: magnesium ion transport4.72E-03
96GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.72E-03
97GO:1900057: positive regulation of leaf senescence4.72E-03
98GO:0009645: response to low light intensity stimulus4.72E-03
99GO:0009642: response to light intensity5.48E-03
100GO:0032508: DNA duplex unwinding5.48E-03
101GO:0045454: cell redox homeostasis5.54E-03
102GO:0006002: fructose 6-phosphate metabolic process6.28E-03
103GO:0009657: plastid organization6.28E-03
104GO:0006633: fatty acid biosynthetic process6.96E-03
105GO:0009051: pentose-phosphate shunt, oxidative branch7.12E-03
106GO:0006098: pentose-phosphate shunt7.12E-03
107GO:0009637: response to blue light8.69E-03
108GO:0009688: abscisic acid biosynthetic process8.92E-03
109GO:0006032: chitin catabolic process8.92E-03
110GO:0034599: cellular response to oxidative stress9.09E-03
111GO:0009750: response to fructose9.88E-03
112GO:0000038: very long-chain fatty acid metabolic process9.88E-03
113GO:0019684: photosynthesis, light reaction9.88E-03
114GO:0009698: phenylpropanoid metabolic process9.88E-03
115GO:0009073: aromatic amino acid family biosynthetic process9.88E-03
116GO:0043085: positive regulation of catalytic activity9.88E-03
117GO:1903507: negative regulation of nucleic acid-templated transcription9.88E-03
118GO:0006352: DNA-templated transcription, initiation9.88E-03
119GO:0016024: CDP-diacylglycerol biosynthetic process1.09E-02
120GO:0010114: response to red light1.12E-02
121GO:0006108: malate metabolic process1.19E-02
122GO:0006006: glucose metabolic process1.19E-02
123GO:0009718: anthocyanin-containing compound biosynthetic process1.19E-02
124GO:0009767: photosynthetic electron transport chain1.19E-02
125GO:0005986: sucrose biosynthetic process1.19E-02
126GO:0010628: positive regulation of gene expression1.19E-02
127GO:0006810: transport1.20E-02
128GO:0055114: oxidation-reduction process1.20E-02
129GO:0009644: response to high light intensity1.22E-02
130GO:0010143: cutin biosynthetic process1.30E-02
131GO:0019253: reductive pentose-phosphate cycle1.30E-02
132GO:0006855: drug transmembrane transport1.31E-02
133GO:0010053: root epidermal cell differentiation1.40E-02
134GO:0009825: multidimensional cell growth1.40E-02
135GO:0010167: response to nitrate1.40E-02
136GO:0005985: sucrose metabolic process1.40E-02
137GO:0071732: cellular response to nitric oxide1.40E-02
138GO:0009809: lignin biosynthetic process1.52E-02
139GO:0006364: rRNA processing1.52E-02
140GO:0008299: isoprenoid biosynthetic process1.75E-02
141GO:0009695: jasmonic acid biosynthetic process1.75E-02
142GO:0006096: glycolytic process1.80E-02
143GO:0016998: cell wall macromolecule catabolic process1.87E-02
144GO:0031408: oxylipin biosynthetic process1.87E-02
145GO:0016226: iron-sulfur cluster assembly2.00E-02
146GO:2000022: regulation of jasmonic acid mediated signaling pathway2.00E-02
147GO:0035428: hexose transmembrane transport2.00E-02
148GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.12E-02
149GO:0045893: positive regulation of transcription, DNA-templated2.22E-02
150GO:0010089: xylem development2.25E-02
151GO:0016117: carotenoid biosynthetic process2.39E-02
152GO:0000413: protein peptidyl-prolyl isomerization2.52E-02
153GO:0042391: regulation of membrane potential2.52E-02
154GO:0080022: primary root development2.52E-02
155GO:0006869: lipid transport2.53E-02
156GO:0010182: sugar mediated signaling pathway2.66E-02
157GO:0046323: glucose import2.66E-02
158GO:0006662: glycerol ether metabolic process2.66E-02
159GO:0019252: starch biosynthetic process2.95E-02
160GO:0008654: phospholipid biosynthetic process2.95E-02
161GO:0006397: mRNA processing3.09E-02
162GO:0042744: hydrogen peroxide catabolic process3.09E-02
163GO:0071554: cell wall organization or biogenesis3.09E-02
164GO:0000302: response to reactive oxygen species3.09E-02
165GO:0071281: cellular response to iron ion3.39E-02
166GO:0005975: carbohydrate metabolic process3.53E-02
167GO:0009828: plant-type cell wall loosening3.55E-02
168GO:0009567: double fertilization forming a zygote and endosperm3.55E-02
169GO:0007623: circadian rhythm3.74E-02
170GO:0009451: RNA modification3.82E-02
171GO:0001666: response to hypoxia4.02E-02
172GO:0042128: nitrate assimilation4.35E-02
173GO:0009817: defense response to fungus, incompatible interaction4.85E-02
174GO:0030244: cellulose biosynthetic process4.85E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0046608: carotenoid isomerase activity0.00E+00
4GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
5GO:0010301: xanthoxin dehydrogenase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
8GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
9GO:0008266: poly(U) RNA binding2.04E-06
10GO:0016168: chlorophyll binding3.73E-06
11GO:0019843: rRNA binding1.65E-05
12GO:0043495: protein anchor6.18E-05
13GO:0005528: FK506 binding1.17E-04
14GO:0022891: substrate-specific transmembrane transporter activity2.01E-04
15GO:0019899: enzyme binding2.51E-04
16GO:0005221: intracellular cyclic nucleotide activated cation channel activity3.09E-04
17GO:0004333: fumarate hydratase activity3.09E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity3.09E-04
19GO:0004856: xylulokinase activity3.09E-04
20GO:0009496: plastoquinol--plastocyanin reductase activity3.09E-04
21GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.09E-04
22GO:0010242: oxygen evolving activity3.09E-04
23GO:0004321: fatty-acyl-CoA synthase activity3.09E-04
24GO:0045485: omega-6 fatty acid desaturase activity3.09E-04
25GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.13E-04
26GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.58E-04
27GO:0047746: chlorophyllase activity6.76E-04
28GO:0009977: proton motive force dependent protein transmembrane transporter activity6.76E-04
29GO:0004617: phosphoglycerate dehydrogenase activity6.76E-04
30GO:0033201: alpha-1,4-glucan synthase activity6.76E-04
31GO:0004312: fatty acid synthase activity6.76E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.76E-04
33GO:0016630: protochlorophyllide reductase activity6.76E-04
34GO:0004565: beta-galactosidase activity9.61E-04
35GO:0004022: alcohol dehydrogenase (NAD) activity9.61E-04
36GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.10E-03
37GO:0070402: NADPH binding1.10E-03
38GO:0008864: formyltetrahydrofolate deformylase activity1.10E-03
39GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.10E-03
40GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.10E-03
41GO:0004373: glycogen (starch) synthase activity1.10E-03
42GO:0004751: ribose-5-phosphate isomerase activity1.10E-03
43GO:0016787: hydrolase activity1.16E-03
44GO:0031409: pigment binding1.34E-03
45GO:0051536: iron-sulfur cluster binding1.49E-03
46GO:0043023: ribosomal large subunit binding1.57E-03
47GO:0001872: (1->3)-beta-D-glucan binding1.57E-03
48GO:0016851: magnesium chelatase activity1.57E-03
49GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.57E-03
50GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.11E-03
51GO:0001053: plastid sigma factor activity2.11E-03
52GO:0004345: glucose-6-phosphate dehydrogenase activity2.11E-03
53GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.11E-03
54GO:0004045: aminoacyl-tRNA hydrolase activity2.11E-03
55GO:0016987: sigma factor activity2.11E-03
56GO:0009011: starch synthase activity2.11E-03
57GO:0003959: NADPH dehydrogenase activity2.69E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor2.69E-03
59GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.32E-03
60GO:0004332: fructose-bisphosphate aldolase activity3.32E-03
61GO:0004130: cytochrome-c peroxidase activity3.32E-03
62GO:0042578: phosphoric ester hydrolase activity3.32E-03
63GO:0016688: L-ascorbate peroxidase activity3.32E-03
64GO:0005242: inward rectifier potassium channel activity4.00E-03
65GO:0051920: peroxiredoxin activity4.00E-03
66GO:0005261: cation channel activity4.00E-03
67GO:0016746: transferase activity, transferring acyl groups4.06E-03
68GO:0003729: mRNA binding4.21E-03
69GO:0004620: phospholipase activity4.72E-03
70GO:0015250: water channel activity5.25E-03
71GO:0016209: antioxidant activity5.48E-03
72GO:0008312: 7S RNA binding5.48E-03
73GO:0052747: sinapyl alcohol dehydrogenase activity5.48E-03
74GO:0004033: aldo-keto reductase (NADP) activity5.48E-03
75GO:0043022: ribosome binding5.48E-03
76GO:0030247: polysaccharide binding6.18E-03
77GO:0008236: serine-type peptidase activity6.51E-03
78GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.12E-03
79GO:0016207: 4-coumarate-CoA ligase activity7.12E-03
80GO:0004568: chitinase activity8.92E-03
81GO:0008047: enzyme activator activity8.92E-03
82GO:0016491: oxidoreductase activity9.70E-03
83GO:0015386: potassium:proton antiporter activity9.88E-03
84GO:0042802: identical protein binding1.07E-02
85GO:0045551: cinnamyl-alcohol dehydrogenase activity1.09E-02
86GO:0015095: magnesium ion transmembrane transporter activity1.19E-02
87GO:0005262: calcium channel activity1.19E-02
88GO:0009982: pseudouridine synthase activity1.19E-02
89GO:0008081: phosphoric diester hydrolase activity1.19E-02
90GO:0030552: cAMP binding1.40E-02
91GO:0030553: cGMP binding1.40E-02
92GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.52E-02
93GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.52E-02
94GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.52E-02
95GO:0004857: enzyme inhibitor activity1.63E-02
96GO:0003714: transcription corepressor activity1.63E-02
97GO:0043424: protein histidine kinase binding1.75E-02
98GO:0005216: ion channel activity1.75E-02
99GO:0015079: potassium ion transmembrane transporter activity1.75E-02
100GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.86E-02
101GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.00E-02
102GO:0047134: protein-disulfide reductase activity2.39E-02
103GO:0030551: cyclic nucleotide binding2.52E-02
104GO:0004791: thioredoxin-disulfide reductase activity2.80E-02
105GO:0016853: isomerase activity2.80E-02
106GO:0005355: glucose transmembrane transporter activity2.80E-02
107GO:0050662: coenzyme binding2.80E-02
108GO:0010181: FMN binding2.80E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.39E-02
110GO:0000156: phosphorelay response regulator activity3.39E-02
111GO:0016791: phosphatase activity3.55E-02
112GO:0016413: O-acetyltransferase activity3.86E-02
113GO:0016597: amino acid binding3.86E-02
114GO:0004721: phosphoprotein phosphatase activity4.51E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast9.73E-55
4GO:0009535: chloroplast thylakoid membrane4.79E-29
5GO:0009570: chloroplast stroma6.38E-26
6GO:0009534: chloroplast thylakoid6.96E-20
7GO:0009941: chloroplast envelope1.36E-19
8GO:0009579: thylakoid4.33E-16
9GO:0009543: chloroplast thylakoid lumen1.68E-13
10GO:0031977: thylakoid lumen1.23E-09
11GO:0031969: chloroplast membrane2.94E-06
12GO:0009533: chloroplast stromal thylakoid5.63E-06
13GO:0010287: plastoglobule1.41E-05
14GO:0009523: photosystem II2.64E-05
15GO:0042651: thylakoid membrane1.36E-04
16GO:0016020: membrane1.54E-04
17GO:0009547: plastid ribosome3.09E-04
18GO:0045239: tricarboxylic acid cycle enzyme complex3.09E-04
19GO:0031361: integral component of thylakoid membrane3.09E-04
20GO:0009782: photosystem I antenna complex3.09E-04
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.68E-04
22GO:0030529: intracellular ribonucleoprotein complex6.61E-04
23GO:0080085: signal recognition particle, chloroplast targeting6.76E-04
24GO:0032040: small-subunit processome8.50E-04
25GO:0030095: chloroplast photosystem II1.08E-03
26GO:0033281: TAT protein transport complex1.10E-03
27GO:0010007: magnesium chelatase complex1.10E-03
28GO:0030076: light-harvesting complex1.21E-03
29GO:0009654: photosystem II oxygen evolving complex1.64E-03
30GO:0009526: plastid envelope2.11E-03
31GO:0055035: plastid thylakoid membrane2.69E-03
32GO:0009512: cytochrome b6f complex2.69E-03
33GO:0019898: extrinsic component of membrane3.39E-03
34GO:0009501: amyloplast5.48E-03
35GO:0016021: integral component of membrane5.80E-03
36GO:0005840: ribosome6.21E-03
37GO:0046930: pore complex6.28E-03
38GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.28E-03
39GO:0008180: COP9 signalosome7.12E-03
40GO:0055028: cortical microtubule8.92E-03
41GO:0000311: plastid large ribosomal subunit1.09E-02
42GO:0046658: anchored component of plasma membrane1.12E-02
43GO:0000312: plastid small ribosomal subunit1.30E-02
44GO:0009532: plastid stroma1.87E-02
45GO:0009706: chloroplast inner membrane2.16E-02
46GO:0009536: plastid2.47E-02
47GO:0048046: apoplast2.78E-02
48GO:0009522: photosystem I2.80E-02
49GO:0016592: mediator complex3.24E-02
50GO:0010319: stromule3.70E-02
51GO:0005887: integral component of plasma membrane4.28E-02
52GO:0019005: SCF ubiquitin ligase complex4.85E-02
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Gene type



Gene DE type