Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G43670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0045176: apical protein localization0.00E+00
6GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
15GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
16GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
17GO:0015979: photosynthesis2.19E-13
18GO:0009773: photosynthetic electron transport in photosystem I7.86E-11
19GO:0010027: thylakoid membrane organization8.64E-08
20GO:0032544: plastid translation1.33E-07
21GO:1902326: positive regulation of chlorophyll biosynthetic process3.96E-06
22GO:0018298: protein-chromophore linkage5.39E-06
23GO:0006000: fructose metabolic process1.41E-05
24GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.17E-05
25GO:0045727: positive regulation of translation5.68E-05
26GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.30E-04
27GO:0009853: photorespiration1.39E-04
28GO:0061077: chaperone-mediated protein folding1.41E-04
29GO:0010019: chloroplast-nucleus signaling pathway1.78E-04
30GO:0010196: nonphotochemical quenching2.33E-04
31GO:0065002: intracellular protein transmembrane transport2.94E-04
32GO:0006106: fumarate metabolic process2.94E-04
33GO:0043609: regulation of carbon utilization2.94E-04
34GO:0034337: RNA folding2.94E-04
35GO:0071588: hydrogen peroxide mediated signaling pathway2.94E-04
36GO:0009443: pyridoxal 5'-phosphate salvage2.94E-04
37GO:0043953: protein transport by the Tat complex2.94E-04
38GO:0000481: maturation of 5S rRNA2.94E-04
39GO:0006810: transport3.51E-04
40GO:0006002: fructose 6-phosphate metabolic process3.62E-04
41GO:0071482: cellular response to light stimulus3.62E-04
42GO:1900865: chloroplast RNA modification5.16E-04
43GO:0009658: chloroplast organization5.72E-04
44GO:0030388: fructose 1,6-bisphosphate metabolic process6.45E-04
45GO:0010270: photosystem II oxygen evolving complex assembly6.45E-04
46GO:0080005: photosystem stoichiometry adjustment6.45E-04
47GO:0034755: iron ion transmembrane transport6.45E-04
48GO:0009662: etioplast organization6.45E-04
49GO:0097054: L-glutamate biosynthetic process6.45E-04
50GO:0015995: chlorophyll biosynthetic process7.43E-04
51GO:0006094: gluconeogenesis8.98E-04
52GO:0009767: photosynthetic electron transport chain8.98E-04
53GO:0010207: photosystem II assembly1.01E-03
54GO:1902448: positive regulation of shade avoidance1.04E-03
55GO:0006954: inflammatory response1.04E-03
56GO:0006518: peptide metabolic process1.04E-03
57GO:0051604: protein maturation1.04E-03
58GO:0055114: oxidation-reduction process1.17E-03
59GO:2001141: regulation of RNA biosynthetic process1.50E-03
60GO:0006020: inositol metabolic process1.50E-03
61GO:0009152: purine ribonucleotide biosynthetic process1.50E-03
62GO:0046653: tetrahydrofolate metabolic process1.50E-03
63GO:0006537: glutamate biosynthetic process1.50E-03
64GO:0016556: mRNA modification1.50E-03
65GO:0009768: photosynthesis, light harvesting in photosystem I1.53E-03
66GO:0010021: amylopectin biosynthetic process2.01E-03
67GO:0006808: regulation of nitrogen utilization2.01E-03
68GO:0010109: regulation of photosynthesis2.01E-03
69GO:0019676: ammonia assimilation cycle2.01E-03
70GO:0019464: glycine decarboxylation via glycine cleavage system2.01E-03
71GO:0009765: photosynthesis, light harvesting2.01E-03
72GO:0015994: chlorophyll metabolic process2.01E-03
73GO:0006021: inositol biosynthetic process2.01E-03
74GO:0006364: rRNA processing2.27E-03
75GO:0006461: protein complex assembly2.56E-03
76GO:0032543: mitochondrial translation2.56E-03
77GO:0006544: glycine metabolic process2.56E-03
78GO:0006564: L-serine biosynthetic process2.56E-03
79GO:0006563: L-serine metabolic process3.16E-03
80GO:0048827: phyllome development3.16E-03
81GO:0042549: photosystem II stabilization3.16E-03
82GO:0000470: maturation of LSU-rRNA3.16E-03
83GO:0016554: cytidine to uridine editing3.16E-03
84GO:0010190: cytochrome b6f complex assembly3.16E-03
85GO:0006828: manganese ion transport3.16E-03
86GO:0032973: amino acid export3.16E-03
87GO:0046855: inositol phosphate dephosphorylation3.16E-03
88GO:0019252: starch biosynthetic process3.16E-03
89GO:0042026: protein refolding3.81E-03
90GO:0006458: 'de novo' protein folding3.81E-03
91GO:0009735: response to cytokinin3.87E-03
92GO:0043090: amino acid import4.49E-03
93GO:0009645: response to low light intensity stimulus4.49E-03
94GO:0009416: response to light stimulus4.53E-03
95GO:0045454: cell redox homeostasis4.95E-03
96GO:0010492: maintenance of shoot apical meristem identity5.21E-03
97GO:0006605: protein targeting5.21E-03
98GO:0009704: de-etiolation5.21E-03
99GO:0032508: DNA duplex unwinding5.21E-03
100GO:0042128: nitrate assimilation5.45E-03
101GO:0017004: cytochrome complex assembly5.98E-03
102GO:0009657: plastid organization5.98E-03
103GO:0006413: translational initiation6.54E-03
104GO:0009051: pentose-phosphate shunt, oxidative branch6.77E-03
105GO:0006098: pentose-phosphate shunt6.77E-03
106GO:0010206: photosystem II repair6.77E-03
107GO:0080144: amino acid homeostasis6.77E-03
108GO:0048507: meristem development6.77E-03
109GO:0007623: circadian rhythm7.15E-03
110GO:0009631: cold acclimation7.37E-03
111GO:0010205: photoinhibition7.60E-03
112GO:0006779: porphyrin-containing compound biosynthetic process7.60E-03
113GO:0035999: tetrahydrofolate interconversion7.60E-03
114GO:0009637: response to blue light8.08E-03
115GO:0034599: cellular response to oxidative stress8.45E-03
116GO:0006782: protoporphyrinogen IX biosynthetic process8.48E-03
117GO:0006816: calcium ion transport9.38E-03
118GO:0019684: photosynthesis, light reaction9.38E-03
119GO:0009089: lysine biosynthetic process via diaminopimelate9.38E-03
120GO:0009073: aromatic amino acid family biosynthetic process9.38E-03
121GO:0043085: positive regulation of catalytic activity9.38E-03
122GO:0006879: cellular iron ion homeostasis9.38E-03
123GO:0006352: DNA-templated transcription, initiation9.38E-03
124GO:0006415: translational termination9.38E-03
125GO:0000272: polysaccharide catabolic process9.38E-03
126GO:0018119: peptidyl-cysteine S-nitrosylation9.38E-03
127GO:0006790: sulfur compound metabolic process1.03E-02
128GO:0005983: starch catabolic process1.03E-02
129GO:0010114: response to red light1.04E-02
130GO:0010229: inflorescence development1.13E-02
131GO:0005986: sucrose biosynthetic process1.13E-02
132GO:0009644: response to high light intensity1.13E-02
133GO:0010628: positive regulation of gene expression1.13E-02
134GO:0006108: malate metabolic process1.13E-02
135GO:0006006: glucose metabolic process1.13E-02
136GO:0010540: basipetal auxin transport1.23E-02
137GO:0019253: reductive pentose-phosphate cycle1.23E-02
138GO:0042254: ribosome biogenesis1.28E-02
139GO:0046854: phosphatidylinositol phosphorylation1.33E-02
140GO:0005985: sucrose metabolic process1.33E-02
141GO:0090351: seedling development1.33E-02
142GO:0006813: potassium ion transport1.41E-02
143GO:0010025: wax biosynthetic process1.44E-02
144GO:0006636: unsaturated fatty acid biosynthetic process1.44E-02
145GO:0008299: isoprenoid biosynthetic process1.66E-02
146GO:0016575: histone deacetylation1.66E-02
147GO:0006418: tRNA aminoacylation for protein translation1.66E-02
148GO:0016114: terpenoid biosynthetic process1.78E-02
149GO:0016226: iron-sulfur cluster assembly1.90E-02
150GO:0035428: hexose transmembrane transport1.90E-02
151GO:0006730: one-carbon metabolic process1.90E-02
152GO:0006012: galactose metabolic process2.02E-02
153GO:0009561: megagametogenesis2.14E-02
154GO:0009306: protein secretion2.14E-02
155GO:0016117: carotenoid biosynthetic process2.27E-02
156GO:0055085: transmembrane transport2.32E-02
157GO:0042631: cellular response to water deprivation2.40E-02
158GO:0046323: glucose import2.53E-02
159GO:0006662: glycerol ether metabolic process2.53E-02
160GO:0009409: response to cold2.58E-02
161GO:0006814: sodium ion transport2.66E-02
162GO:0048825: cotyledon development2.80E-02
163GO:0080156: mitochondrial mRNA modification2.94E-02
164GO:0000302: response to reactive oxygen species2.94E-02
165GO:0008152: metabolic process3.02E-02
166GO:0009567: double fertilization forming a zygote and endosperm3.37E-02
167GO:0071805: potassium ion transmembrane transport3.51E-02
168GO:0009451: RNA modification3.56E-02
169GO:0001666: response to hypoxia3.82E-02
170GO:0009911: positive regulation of flower development3.82E-02
171GO:0010468: regulation of gene expression4.14E-02
172GO:0009817: defense response to fungus, incompatible interaction4.61E-02
173GO:0006499: N-terminal protein myristoylation4.94E-02
174GO:0009407: toxin catabolic process4.94E-02
175GO:0010218: response to far red light4.94E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
4GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
5GO:0046608: carotenoid isomerase activity0.00E+00
6GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
7GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
8GO:0010303: limit dextrinase activity0.00E+00
9GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
10GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
11GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
12GO:0051721: protein phosphatase 2A binding0.00E+00
13GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
14GO:0042903: tubulin deacetylase activity0.00E+00
15GO:0043014: alpha-tubulin binding0.00E+00
16GO:0051060: pullulanase activity0.00E+00
17GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
18GO:0004823: leucine-tRNA ligase activity0.00E+00
19GO:0016168: chlorophyll binding3.10E-06
20GO:0005528: FK506 binding3.73E-06
21GO:0004033: aldo-keto reductase (NADP) activity7.53E-06
22GO:0019843: rRNA binding1.34E-05
23GO:0070402: NADPH binding1.41E-05
24GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.69E-05
25GO:0031072: heat shock protein binding5.23E-05
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.68E-05
27GO:0043495: protein anchor5.68E-05
28GO:0016773: phosphotransferase activity, alcohol group as acceptor8.98E-05
29GO:0022891: substrate-specific transmembrane transporter activity1.82E-04
30GO:0019899: enzyme binding2.33E-04
31GO:0016041: glutamate synthase (ferredoxin) activity2.94E-04
32GO:0004333: fumarate hydratase activity2.94E-04
33GO:0004856: xylulokinase activity2.94E-04
34GO:0009496: plastoquinol--plastocyanin reductase activity2.94E-04
35GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.94E-04
36GO:0070006: metalloaminopeptidase activity2.94E-04
37GO:0003867: 4-aminobutyrate transaminase activity2.94E-04
38GO:0045485: omega-6 fatty acid desaturase activity2.94E-04
39GO:0051082: unfolded protein binding6.11E-04
40GO:0047746: chlorophyllase activity6.45E-04
41GO:0010297: heteropolysaccharide binding6.45E-04
42GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.45E-04
43GO:0009977: proton motive force dependent protein transmembrane transporter activity6.45E-04
44GO:0004617: phosphoglycerate dehydrogenase activity6.45E-04
45GO:0052832: inositol monophosphate 3-phosphatase activity6.45E-04
46GO:0033201: alpha-1,4-glucan synthase activity6.45E-04
47GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.45E-04
48GO:0016630: protochlorophyllide reductase activity6.45E-04
49GO:0008934: inositol monophosphate 1-phosphatase activity6.45E-04
50GO:0052833: inositol monophosphate 4-phosphatase activity6.45E-04
51GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.45E-04
52GO:0008967: phosphoglycolate phosphatase activity6.45E-04
53GO:0008266: poly(U) RNA binding1.01E-03
54GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.04E-03
55GO:0008864: formyltetrahydrofolate deformylase activity1.04E-03
56GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.04E-03
57GO:0004373: glycogen (starch) synthase activity1.04E-03
58GO:0017150: tRNA dihydrouridine synthase activity1.04E-03
59GO:0002161: aminoacyl-tRNA editing activity1.04E-03
60GO:0031409: pigment binding1.25E-03
61GO:0008508: bile acid:sodium symporter activity1.50E-03
62GO:0048487: beta-tubulin binding1.50E-03
63GO:0016149: translation release factor activity, codon specific1.50E-03
64GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.50E-03
65GO:0015079: potassium ion transmembrane transporter activity1.53E-03
66GO:0004519: endonuclease activity1.91E-03
67GO:0001053: plastid sigma factor activity2.01E-03
68GO:0004345: glucose-6-phosphate dehydrogenase activity2.01E-03
69GO:0016987: sigma factor activity2.01E-03
70GO:0009011: starch synthase activity2.01E-03
71GO:0051538: 3 iron, 4 sulfur cluster binding2.56E-03
72GO:0004372: glycine hydroxymethyltransferase activity2.56E-03
73GO:0003959: NADPH dehydrogenase activity2.56E-03
74GO:0016853: isomerase activity2.94E-03
75GO:0050662: coenzyme binding2.94E-03
76GO:2001070: starch binding3.16E-03
77GO:0004332: fructose-bisphosphate aldolase activity3.16E-03
78GO:0004130: cytochrome-c peroxidase activity3.16E-03
79GO:0004556: alpha-amylase activity3.16E-03
80GO:0016688: L-ascorbate peroxidase activity3.16E-03
81GO:0048038: quinone binding3.38E-03
82GO:0051920: peroxiredoxin activity3.81E-03
83GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.81E-03
84GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.81E-03
85GO:0003723: RNA binding4.85E-03
86GO:0016209: antioxidant activity5.21E-03
87GO:0004034: aldose 1-epimerase activity5.21E-03
88GO:0043022: ribosome binding5.21E-03
89GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.98E-03
90GO:0008236: serine-type peptidase activity6.06E-03
91GO:0003747: translation release factor activity6.77E-03
92GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors6.77E-03
93GO:0004222: metalloendopeptidase activity7.03E-03
94GO:0005381: iron ion transmembrane transporter activity7.60E-03
95GO:0005384: manganese ion transmembrane transporter activity7.60E-03
96GO:0016787: hydrolase activity7.87E-03
97GO:0016491: oxidoreductase activity8.41E-03
98GO:0008047: enzyme activator activity8.48E-03
99GO:0003743: translation initiation factor activity8.72E-03
100GO:0004177: aminopeptidase activity9.38E-03
101GO:0044183: protein binding involved in protein folding9.38E-03
102GO:0015386: potassium:proton antiporter activity9.38E-03
103GO:0015095: magnesium ion transmembrane transporter activity1.13E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding1.13E-02
105GO:0004022: alcohol dehydrogenase (NAD) activity1.13E-02
106GO:0005509: calcium ion binding1.34E-02
107GO:0051536: iron-sulfur cluster binding1.55E-02
108GO:0004407: histone deacetylase activity1.55E-02
109GO:0008324: cation transmembrane transporter activity1.66E-02
110GO:0016874: ligase activity1.89E-02
111GO:0047134: protein-disulfide reductase activity2.27E-02
112GO:0004812: aminoacyl-tRNA ligase activity2.27E-02
113GO:0004791: thioredoxin-disulfide reductase activity2.66E-02
114GO:0005355: glucose transmembrane transporter activity2.66E-02
115GO:0009055: electron carrier activity2.92E-02
116GO:0046872: metal ion binding3.09E-02
117GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.22E-02
118GO:0008237: metallopeptidase activity3.51E-02
119GO:0016597: amino acid binding3.66E-02
120GO:0004721: phosphoprotein phosphatase activity4.29E-02
121GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.41E-02
122GO:0042802: identical protein binding4.41E-02
123GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.61E-02
124GO:0015238: drug transmembrane transporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0009507: chloroplast1.06E-81
5GO:0009535: chloroplast thylakoid membrane1.27E-47
6GO:0009941: chloroplast envelope1.09E-32
7GO:0009570: chloroplast stroma4.25E-31
8GO:0009534: chloroplast thylakoid6.23E-23
9GO:0009543: chloroplast thylakoid lumen4.88E-20
10GO:0031977: thylakoid lumen6.04E-13
11GO:0009579: thylakoid9.91E-13
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.89E-09
13GO:0031969: chloroplast membrane1.19E-08
14GO:0009654: photosystem II oxygen evolving complex9.98E-08
15GO:0009523: photosystem II8.11E-07
16GO:0019898: extrinsic component of membrane8.11E-07
17GO:0030095: chloroplast photosystem II1.74E-06
18GO:0042651: thylakoid membrane4.67E-06
19GO:0010287: plastoglobule1.16E-05
20GO:0009533: chloroplast stromal thylakoid2.33E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]2.94E-04
22GO:0045239: tricarboxylic acid cycle enzyme complex2.94E-04
23GO:0031361: integral component of thylakoid membrane2.94E-04
24GO:0009782: photosystem I antenna complex2.94E-04
25GO:0010319: stromule5.21E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex6.45E-04
27GO:0033281: TAT protein transport complex1.04E-03
28GO:0030076: light-harvesting complex1.13E-03
29GO:0009526: plastid envelope2.01E-03
30GO:0055035: plastid thylakoid membrane2.56E-03
31GO:0009512: cytochrome b6f complex2.56E-03
32GO:0009501: amyloplast5.21E-03
33GO:0005840: ribosome5.38E-03
34GO:0005759: mitochondrial matrix6.34E-03
35GO:0032040: small-subunit processome1.03E-02
36GO:0016020: membrane1.10E-02
37GO:0016021: integral component of membrane1.87E-02
38GO:0009706: chloroplast inner membrane2.01E-02
39GO:0048046: apoplast2.39E-02
40GO:0005770: late endosome2.53E-02
41GO:0009522: photosystem I2.66E-02
42GO:0043231: intracellular membrane-bounded organelle3.02E-02
43GO:0009707: chloroplast outer membrane4.61E-02
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Gene type



Gene DE type