Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G42970

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0005996: monosaccharide metabolic process0.00E+00
2GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
3GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
4GO:0009106: lipoate metabolic process0.00E+00
5GO:0090042: tubulin deacetylation0.00E+00
6GO:0008298: intracellular mRNA localization0.00E+00
7GO:0009249: protein lipoylation0.00E+00
8GO:0015822: ornithine transport0.00E+00
9GO:0019464: glycine decarboxylation via glycine cleavage system1.99E-07
10GO:0009767: photosynthetic electron transport chain5.47E-07
11GO:0019253: reductive pentose-phosphate cycle7.33E-07
12GO:0010275: NAD(P)H dehydrogenase complex assembly2.37E-06
13GO:0071482: cellular response to light stimulus5.59E-06
14GO:0018119: peptidyl-cysteine S-nitrosylation1.81E-05
15GO:0006810: transport2.09E-05
16GO:0006546: glycine catabolic process3.60E-05
17GO:0019676: ammonia assimilation cycle3.60E-05
18GO:0015976: carbon utilization3.60E-05
19GO:0009658: chloroplast organization3.68E-05
20GO:0009853: photorespiration6.86E-05
21GO:0042026: protein refolding1.17E-04
22GO:0010196: nonphotochemical quenching1.54E-04
23GO:0048564: photosystem I assembly1.97E-04
24GO:0006438: valyl-tRNA aminoacylation2.25E-04
25GO:0006659: phosphatidylserine biosynthetic process2.25E-04
26GO:0080093: regulation of photorespiration2.25E-04
27GO:0000066: mitochondrial ornithine transport2.25E-04
28GO:0031998: regulation of fatty acid beta-oxidation2.25E-04
29GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.25E-04
30GO:0009409: response to cold3.52E-04
31GO:0009735: response to cytokinin4.65E-04
32GO:0009773: photosynthetic electron transport in photosystem I4.76E-04
33GO:0006352: DNA-templated transcription, initiation4.76E-04
34GO:0097054: L-glutamate biosynthetic process5.00E-04
35GO:0080183: response to photooxidative stress5.00E-04
36GO:0030388: fructose 1,6-bisphosphate metabolic process5.00E-04
37GO:0010270: photosystem II oxygen evolving complex assembly5.00E-04
38GO:0015979: photosynthesis5.29E-04
39GO:0006094: gluconeogenesis6.19E-04
40GO:0005986: sucrose biosynthetic process6.19E-04
41GO:0010207: photosystem II assembly6.96E-04
42GO:0006696: ergosterol biosynthetic process8.13E-04
43GO:0006081: cellular aldehyde metabolic process8.13E-04
44GO:0006000: fructose metabolic process8.13E-04
45GO:0061077: chaperone-mediated protein folding1.15E-03
46GO:0010731: protein glutathionylation1.16E-03
47GO:0016556: mRNA modification1.16E-03
48GO:2001141: regulation of RNA biosynthetic process1.16E-03
49GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.16E-03
50GO:0051085: chaperone mediated protein folding requiring cofactor1.16E-03
51GO:0006537: glutamate biosynthetic process1.16E-03
52GO:0009052: pentose-phosphate shunt, non-oxidative branch1.16E-03
53GO:0033014: tetrapyrrole biosynthetic process1.16E-03
54GO:0080092: regulation of pollen tube growth1.25E-03
55GO:0006021: inositol biosynthetic process1.54E-03
56GO:0071483: cellular response to blue light1.54E-03
57GO:0010037: response to carbon dioxide1.54E-03
58GO:0006542: glutamine biosynthetic process1.54E-03
59GO:0051781: positive regulation of cell division1.54E-03
60GO:0045727: positive regulation of translation1.54E-03
61GO:2000122: negative regulation of stomatal complex development1.54E-03
62GO:0016117: carotenoid biosynthetic process1.60E-03
63GO:0046686: response to cadmium ion1.66E-03
64GO:0006096: glycolytic process1.71E-03
65GO:0042631: cellular response to water deprivation1.73E-03
66GO:0006544: glycine metabolic process1.97E-03
67GO:0043097: pyrimidine nucleoside salvage1.97E-03
68GO:0010236: plastoquinone biosynthetic process1.97E-03
69GO:0006097: glyoxylate cycle1.97E-03
70GO:0009107: lipoate biosynthetic process1.97E-03
71GO:1902183: regulation of shoot apical meristem development1.97E-03
72GO:0016123: xanthophyll biosynthetic process1.97E-03
73GO:0042742: defense response to bacterium2.25E-03
74GO:0009416: response to light stimulus2.27E-03
75GO:0010190: cytochrome b6f complex assembly2.43E-03
76GO:0006206: pyrimidine nucleobase metabolic process2.43E-03
77GO:0006563: L-serine metabolic process2.43E-03
78GO:0042549: photosystem II stabilization2.43E-03
79GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.43E-03
80GO:0070814: hydrogen sulfide biosynthetic process2.43E-03
81GO:0006458: 'de novo' protein folding2.91E-03
82GO:0017148: negative regulation of translation2.91E-03
83GO:0009854: oxidative photosynthetic carbon pathway2.91E-03
84GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.91E-03
85GO:0009645: response to low light intensity stimulus3.43E-03
86GO:0009704: de-etiolation3.98E-03
87GO:0000105: histidine biosynthetic process3.98E-03
88GO:0052543: callose deposition in cell wall3.98E-03
89GO:0016559: peroxisome fission3.98E-03
90GO:0008610: lipid biosynthetic process3.98E-03
91GO:0007623: circadian rhythm4.34E-03
92GO:0048193: Golgi vesicle transport4.56E-03
93GO:0006526: arginine biosynthetic process4.56E-03
94GO:0032544: plastid translation4.56E-03
95GO:0006002: fructose 6-phosphate metabolic process4.56E-03
96GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.56E-03
97GO:2000024: regulation of leaf development5.16E-03
98GO:0006783: heme biosynthetic process5.16E-03
99GO:0006098: pentose-phosphate shunt5.16E-03
100GO:0006779: porphyrin-containing compound biosynthetic process5.79E-03
101GO:0035999: tetrahydrofolate interconversion5.79E-03
102GO:0006535: cysteine biosynthetic process from serine6.45E-03
103GO:0000103: sulfate assimilation6.45E-03
104GO:0010192: mucilage biosynthetic process6.45E-03
105GO:0009970: cellular response to sulfate starvation6.45E-03
106GO:0006631: fatty acid metabolic process6.49E-03
107GO:0009744: response to sucrose7.04E-03
108GO:0006415: translational termination7.13E-03
109GO:0000272: polysaccharide catabolic process7.13E-03
110GO:0000038: very long-chain fatty acid metabolic process7.13E-03
111GO:0019684: photosynthesis, light reaction7.13E-03
112GO:0009636: response to toxic substance7.91E-03
113GO:0006108: malate metabolic process8.57E-03
114GO:0010020: chloroplast fission9.33E-03
115GO:0080167: response to karrikin9.96E-03
116GO:0090351: seedling development1.01E-02
117GO:0007031: peroxisome organization1.01E-02
118GO:0042343: indole glucosinolate metabolic process1.01E-02
119GO:0046777: protein autophosphorylation1.08E-02
120GO:0009833: plant-type primary cell wall biogenesis1.09E-02
121GO:0000162: tryptophan biosynthetic process1.09E-02
122GO:0048316: seed development1.16E-02
123GO:0006289: nucleotide-excision repair1.17E-02
124GO:0019344: cysteine biosynthetic process1.17E-02
125GO:0009944: polarity specification of adaxial/abaxial axis1.17E-02
126GO:0009768: photosynthesis, light harvesting in photosystem I1.26E-02
127GO:0016575: histone deacetylation1.26E-02
128GO:0006418: tRNA aminoacylation for protein translation1.26E-02
129GO:0098542: defense response to other organism1.34E-02
130GO:0006730: one-carbon metabolic process1.43E-02
131GO:0007005: mitochondrion organization1.43E-02
132GO:0016226: iron-sulfur cluster assembly1.43E-02
133GO:0042335: cuticle development1.81E-02
134GO:0055114: oxidation-reduction process1.82E-02
135GO:0008152: metabolic process1.85E-02
136GO:0008360: regulation of cell shape1.91E-02
137GO:0006814: sodium ion transport2.01E-02
138GO:0019252: starch biosynthetic process2.11E-02
139GO:0008654: phospholipid biosynthetic process2.11E-02
140GO:0009791: post-embryonic development2.11E-02
141GO:0010583: response to cyclopentenone2.32E-02
142GO:0010286: heat acclimation2.65E-02
143GO:0010027: thylakoid membrane organization2.88E-02
144GO:0009627: systemic acquired resistance3.12E-02
145GO:0042128: nitrate assimilation3.12E-02
146GO:0030244: cellulose biosynthetic process3.48E-02
147GO:0018298: protein-chromophore linkage3.48E-02
148GO:0008219: cell death3.48E-02
149GO:0048481: plant ovule development3.48E-02
150GO:0009817: defense response to fungus, incompatible interaction3.48E-02
151GO:0009832: plant-type cell wall biogenesis3.61E-02
152GO:0009407: toxin catabolic process3.73E-02
153GO:0007568: aging3.86E-02
154GO:0010119: regulation of stomatal movement3.86E-02
155GO:0016051: carbohydrate biosynthetic process4.12E-02
156GO:0006099: tricarboxylic acid cycle4.25E-02
157GO:0006839: mitochondrial transport4.52E-02
158GO:0006457: protein folding4.60E-02
159GO:0005975: carbohydrate metabolic process4.72E-02
RankGO TermAdjusted P value
1GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
2GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0043014: alpha-tubulin binding0.00E+00
7GO:0008974: phosphoribulokinase activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0008465: glycerate dehydrogenase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
12GO:0004358: glutamate N-acetyltransferase activity0.00E+00
13GO:0051738: xanthophyll binding0.00E+00
14GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
15GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
16GO:0033721: aldehyde dehydrogenase (NADP+) activity0.00E+00
17GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.55E-06
18GO:0004375: glycine dehydrogenase (decarboxylating) activity1.97E-05
19GO:0008266: poly(U) RNA binding3.47E-05
20GO:0001053: plastid sigma factor activity3.60E-05
21GO:0016987: sigma factor activity3.60E-05
22GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.25E-04
23GO:0004325: ferrochelatase activity2.25E-04
24GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.25E-04
25GO:0051996: squalene synthase activity2.25E-04
26GO:0010313: phytochrome binding2.25E-04
27GO:0004832: valine-tRNA ligase activity2.25E-04
28GO:0016041: glutamate synthase (ferredoxin) activity2.25E-04
29GO:0009496: plastoquinol--plastocyanin reductase activity2.25E-04
30GO:0051082: unfolded protein binding3.32E-04
31GO:0005089: Rho guanyl-nucleotide exchange factor activity4.76E-04
32GO:0044183: protein binding involved in protein folding4.76E-04
33GO:0000064: L-ornithine transmembrane transporter activity5.00E-04
34GO:0004512: inositol-3-phosphate synthase activity5.00E-04
35GO:0008967: phosphoglycolate phosphatase activity5.00E-04
36GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.00E-04
37GO:0050017: L-3-cyanoalanine synthase activity5.00E-04
38GO:0010291: carotene beta-ring hydroxylase activity5.00E-04
39GO:0017118: lipoyltransferase activity5.00E-04
40GO:0004618: phosphoglycerate kinase activity5.00E-04
41GO:0010297: heteropolysaccharide binding5.00E-04
42GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.00E-04
43GO:0016415: octanoyltransferase activity5.00E-04
44GO:0004047: aminomethyltransferase activity5.00E-04
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.00E-04
46GO:0004089: carbonate dehydratase activity6.19E-04
47GO:0031072: heat shock protein binding6.19E-04
48GO:0032947: protein complex scaffold8.13E-04
49GO:0004148: dihydrolipoyl dehydrogenase activity8.13E-04
50GO:0050307: sucrose-phosphate phosphatase activity8.13E-04
51GO:0004751: ribose-5-phosphate isomerase activity8.13E-04
52GO:0004781: sulfate adenylyltransferase (ATP) activity8.13E-04
53GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity8.13E-04
54GO:0004324: ferredoxin-NADP+ reductase activity8.13E-04
55GO:0070330: aromatase activity8.13E-04
56GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity8.13E-04
57GO:0005528: FK506 binding9.55E-04
58GO:0051537: 2 iron, 2 sulfur cluster binding1.06E-03
59GO:0005198: structural molecule activity1.11E-03
60GO:0048487: beta-tubulin binding1.16E-03
61GO:0004300: enoyl-CoA hydratase activity1.16E-03
62GO:0008508: bile acid:sodium symporter activity1.16E-03
63GO:0001872: (1->3)-beta-D-glucan binding1.16E-03
64GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.16E-03
65GO:0048027: mRNA 5'-UTR binding1.16E-03
66GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.54E-03
67GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.54E-03
68GO:0018685: alkane 1-monooxygenase activity1.97E-03
69GO:0051538: 3 iron, 4 sulfur cluster binding1.97E-03
70GO:0004356: glutamate-ammonia ligase activity1.97E-03
71GO:0008374: O-acyltransferase activity1.97E-03
72GO:0004372: glycine hydroxymethyltransferase activity1.97E-03
73GO:0003959: NADPH dehydrogenase activity1.97E-03
74GO:0004029: aldehyde dehydrogenase (NAD) activity2.43E-03
75GO:0042578: phosphoric ester hydrolase activity2.43E-03
76GO:0016615: malate dehydrogenase activity2.43E-03
77GO:0080030: methyl indole-3-acetate esterase activity2.43E-03
78GO:0004332: fructose-bisphosphate aldolase activity2.43E-03
79GO:0004518: nuclease activity2.45E-03
80GO:0004849: uridine kinase activity2.91E-03
81GO:0030060: L-malate dehydrogenase activity2.91E-03
82GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.91E-03
83GO:0004124: cysteine synthase activity2.91E-03
84GO:0043295: glutathione binding3.43E-03
85GO:0016168: chlorophyll binding3.50E-03
86GO:0003843: 1,3-beta-D-glucan synthase activity4.56E-03
87GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.56E-03
88GO:0003747: translation release factor activity5.16E-03
89GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.79E-03
90GO:0004364: glutathione transferase activity6.76E-03
91GO:0005509: calcium ion binding6.78E-03
92GO:0015386: potassium:proton antiporter activity7.13E-03
93GO:0005515: protein binding7.16E-03
94GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.22E-03
95GO:0004565: beta-galactosidase activity8.57E-03
96GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.50E-03
97GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.09E-02
98GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.09E-02
99GO:0031409: pigment binding1.09E-02
100GO:0004725: protein tyrosine phosphatase activity1.09E-02
101GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.09E-02
102GO:0051536: iron-sulfur cluster binding1.17E-02
103GO:0004407: histone deacetylase activity1.17E-02
104GO:0015079: potassium ion transmembrane transporter activity1.26E-02
105GO:0016760: cellulose synthase (UDP-forming) activity1.53E-02
106GO:0022891: substrate-specific transmembrane transporter activity1.53E-02
107GO:0003756: protein disulfide isomerase activity1.62E-02
108GO:0019843: rRNA binding1.70E-02
109GO:0004812: aminoacyl-tRNA ligase activity1.71E-02
110GO:0030170: pyridoxal phosphate binding1.89E-02
111GO:0050662: coenzyme binding2.01E-02
112GO:0019901: protein kinase binding2.11E-02
113GO:0048038: quinone binding2.22E-02
114GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.43E-02
115GO:0005506: iron ion binding2.52E-02
116GO:0016759: cellulose synthase activity2.54E-02
117GO:0008483: transaminase activity2.65E-02
118GO:0016597: amino acid binding2.77E-02
119GO:0003824: catalytic activity2.96E-02
120GO:0042802: identical protein binding2.99E-02
121GO:0009931: calcium-dependent protein serine/threonine kinase activity3.12E-02
122GO:0030247: polysaccharide binding3.24E-02
123GO:0004683: calmodulin-dependent protein kinase activity3.24E-02
124GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.36E-02
125GO:0015238: drug transmembrane transporter activity3.61E-02
126GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.73E-02
127GO:0016491: oxidoreductase activity3.85E-02
128GO:0050897: cobalt ion binding3.86E-02
129GO:0000987: core promoter proximal region sequence-specific DNA binding4.25E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast3.37E-48
5GO:0009535: chloroplast thylakoid membrane1.37E-24
6GO:0009570: chloroplast stroma1.64E-19
7GO:0009941: chloroplast envelope3.33E-19
8GO:0009579: thylakoid4.87E-14
9GO:0009534: chloroplast thylakoid3.06E-09
10GO:0010319: stromule1.71E-08
11GO:0009654: photosystem II oxygen evolving complex3.44E-08
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.76E-08
13GO:0048046: apoplast1.84E-07
14GO:0009543: chloroplast thylakoid lumen2.34E-07
15GO:0019898: extrinsic component of membrane1.03E-05
16GO:0005960: glycine cleavage complex1.97E-05
17GO:0030095: chloroplast photosystem II3.47E-05
18GO:0010287: plastoglobule5.14E-05
19GO:0031969: chloroplast membrane6.39E-05
20GO:0009782: photosystem I antenna complex2.25E-04
21GO:0000427: plastid-encoded plastid RNA polymerase complex5.00E-04
22GO:0045254: pyruvate dehydrogenase complex5.00E-04
23GO:0005759: mitochondrial matrix6.72E-04
24GO:0031977: thylakoid lumen8.67E-04
25GO:0016020: membrane1.05E-03
26GO:0009517: PSII associated light-harvesting complex II1.54E-03
27GO:0055035: plastid thylakoid membrane1.97E-03
28GO:0009512: cytochrome b6f complex1.97E-03
29GO:0009523: photosystem II2.15E-03
30GO:0009840: chloroplastic endopeptidase Clp complex2.91E-03
31GO:0009539: photosystem II reaction center4.56E-03
32GO:0000148: 1,3-beta-D-glucan synthase complex4.56E-03
33GO:0005779: integral component of peroxisomal membrane4.56E-03
34GO:0016324: apical plasma membrane6.45E-03
35GO:0022626: cytosolic ribosome8.38E-03
36GO:0009508: plastid chromosome8.57E-03
37GO:0030076: light-harvesting complex1.01E-02
38GO:0005777: peroxisome1.10E-02
39GO:0042651: thylakoid membrane1.26E-02
40GO:0009532: plastid stroma1.34E-02
41GO:0005829: cytosol2.15E-02
42GO:0009295: nucleoid2.65E-02
43GO:0005778: peroxisomal membrane2.65E-02
44GO:0046658: anchored component of plasma membrane3.11E-02
45GO:0009536: plastid3.48E-02
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Gene type



Gene DE type