GO Enrichment Analysis of Co-expressed Genes with
AT1G36390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0006412: translation | 6.94E-13 |
| 5 | GO:0090391: granum assembly | 5.95E-10 |
| 6 | GO:0042254: ribosome biogenesis | 7.86E-09 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 1.44E-08 |
| 8 | GO:0009735: response to cytokinin | 1.63E-08 |
| 9 | GO:0010236: plastoquinone biosynthetic process | 7.07E-06 |
| 10 | GO:0015979: photosynthesis | 1.39E-05 |
| 11 | GO:0010196: nonphotochemical quenching | 2.15E-05 |
| 12 | GO:0009772: photosynthetic electron transport in photosystem II | 2.15E-05 |
| 13 | GO:0010027: thylakoid membrane organization | 3.08E-05 |
| 14 | GO:0032544: plastid translation | 3.64E-05 |
| 15 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.42E-05 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 6.42E-05 |
| 17 | GO:0042371: vitamin K biosynthetic process | 6.42E-05 |
| 18 | GO:0071588: hydrogen peroxide mediated signaling pathway | 6.42E-05 |
| 19 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.55E-04 |
| 20 | GO:0006241: CTP biosynthetic process | 3.82E-04 |
| 21 | GO:0006165: nucleoside diphosphate phosphorylation | 3.82E-04 |
| 22 | GO:0006228: UTP biosynthetic process | 3.82E-04 |
| 23 | GO:1901332: negative regulation of lateral root development | 3.82E-04 |
| 24 | GO:0006986: response to unfolded protein | 3.82E-04 |
| 25 | GO:2001141: regulation of RNA biosynthetic process | 3.82E-04 |
| 26 | GO:0009102: biotin biosynthetic process | 3.82E-04 |
| 27 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.82E-04 |
| 28 | GO:0051639: actin filament network formation | 3.82E-04 |
| 29 | GO:0006633: fatty acid biosynthetic process | 4.48E-04 |
| 30 | GO:0006183: GTP biosynthetic process | 5.10E-04 |
| 31 | GO:0051764: actin crosslink formation | 5.10E-04 |
| 32 | GO:0009658: chloroplast organization | 8.69E-04 |
| 33 | GO:0042372: phylloquinone biosynthetic process | 9.40E-04 |
| 34 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.40E-04 |
| 35 | GO:0030488: tRNA methylation | 9.40E-04 |
| 36 | GO:0010189: vitamin E biosynthetic process | 9.40E-04 |
| 37 | GO:0010019: chloroplast-nucleus signaling pathway | 9.40E-04 |
| 38 | GO:0045010: actin nucleation | 1.26E-03 |
| 39 | GO:0048564: photosystem I assembly | 1.26E-03 |
| 40 | GO:0071482: cellular response to light stimulus | 1.44E-03 |
| 41 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.81E-03 |
| 42 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.01E-03 |
| 43 | GO:0006535: cysteine biosynthetic process from serine | 2.01E-03 |
| 44 | GO:0009773: photosynthetic electron transport in photosystem I | 2.21E-03 |
| 45 | GO:0006352: DNA-templated transcription, initiation | 2.21E-03 |
| 46 | GO:0030036: actin cytoskeleton organization | 2.64E-03 |
| 47 | GO:0009790: embryo development | 3.56E-03 |
| 48 | GO:0000027: ribosomal large subunit assembly | 3.57E-03 |
| 49 | GO:0051017: actin filament bundle assembly | 3.57E-03 |
| 50 | GO:0019344: cysteine biosynthetic process | 3.57E-03 |
| 51 | GO:0006418: tRNA aminoacylation for protein translation | 3.82E-03 |
| 52 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.60E-03 |
| 53 | GO:0009411: response to UV | 4.60E-03 |
| 54 | GO:0042335: cuticle development | 5.43E-03 |
| 55 | GO:0080022: primary root development | 5.43E-03 |
| 56 | GO:0000413: protein peptidyl-prolyl isomerization | 5.43E-03 |
| 57 | GO:0015986: ATP synthesis coupled proton transport | 6.01E-03 |
| 58 | GO:0000302: response to reactive oxygen species | 6.61E-03 |
| 59 | GO:0010090: trichome morphogenesis | 7.24E-03 |
| 60 | GO:0009828: plant-type cell wall loosening | 7.55E-03 |
| 61 | GO:0009567: double fertilization forming a zygote and endosperm | 7.55E-03 |
| 62 | GO:0080167: response to karrikin | 8.04E-03 |
| 63 | GO:0009817: defense response to fungus, incompatible interaction | 1.03E-02 |
| 64 | GO:0048481: plant ovule development | 1.03E-02 |
| 65 | GO:0018298: protein-chromophore linkage | 1.03E-02 |
| 66 | GO:0010311: lateral root formation | 1.07E-02 |
| 67 | GO:0009631: cold acclimation | 1.14E-02 |
| 68 | GO:0009637: response to blue light | 1.22E-02 |
| 69 | GO:0034599: cellular response to oxidative stress | 1.25E-02 |
| 70 | GO:0030001: metal ion transport | 1.33E-02 |
| 71 | GO:0042542: response to hydrogen peroxide | 1.41E-02 |
| 72 | GO:0010114: response to red light | 1.45E-02 |
| 73 | GO:0009734: auxin-activated signaling pathway | 1.68E-02 |
| 74 | GO:0009664: plant-type cell wall organization | 1.71E-02 |
| 75 | GO:0006486: protein glycosylation | 1.80E-02 |
| 76 | GO:0009585: red, far-red light phototransduction | 1.80E-02 |
| 77 | GO:0009742: brassinosteroid mediated signaling pathway | 2.41E-02 |
| 78 | GO:0006457: protein folding | 2.74E-02 |
| 79 | GO:0042744: hydrogen peroxide catabolic process | 2.97E-02 |
| 80 | GO:0007166: cell surface receptor signaling pathway | 3.75E-02 |
| 81 | GO:0009826: unidimensional cell growth | 4.52E-02 |
| 82 | GO:0009860: pollen tube growth | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 2 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 6 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 7 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 8 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 1.76E-15 |
| 10 | GO:0003735: structural constituent of ribosome | 2.85E-13 |
| 11 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.37E-07 |
| 12 | GO:0016851: magnesium chelatase activity | 2.19E-06 |
| 13 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 6.42E-05 |
| 14 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 6.42E-05 |
| 15 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 6.42E-05 |
| 16 | GO:0016630: protochlorophyllide reductase activity | 1.55E-04 |
| 17 | GO:0002161: aminoacyl-tRNA editing activity | 2.63E-04 |
| 18 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 2.63E-04 |
| 19 | GO:0004550: nucleoside diphosphate kinase activity | 3.82E-04 |
| 20 | GO:0008097: 5S rRNA binding | 3.82E-04 |
| 21 | GO:0016987: sigma factor activity | 5.10E-04 |
| 22 | GO:0043495: protein anchor | 5.10E-04 |
| 23 | GO:0004659: prenyltransferase activity | 5.10E-04 |
| 24 | GO:0001053: plastid sigma factor activity | 5.10E-04 |
| 25 | GO:0016836: hydro-lyase activity | 5.10E-04 |
| 26 | GO:0004040: amidase activity | 6.45E-04 |
| 27 | GO:0003959: NADPH dehydrogenase activity | 6.45E-04 |
| 28 | GO:0004130: cytochrome-c peroxidase activity | 7.90E-04 |
| 29 | GO:0016688: L-ascorbate peroxidase activity | 7.90E-04 |
| 30 | GO:0015631: tubulin binding | 9.40E-04 |
| 31 | GO:0004124: cysteine synthase activity | 9.40E-04 |
| 32 | GO:0019899: enzyme binding | 1.10E-03 |
| 33 | GO:0004033: aldo-keto reductase (NADP) activity | 1.26E-03 |
| 34 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-03 |
| 35 | GO:0000049: tRNA binding | 2.42E-03 |
| 36 | GO:0008378: galactosyltransferase activity | 2.42E-03 |
| 37 | GO:0004565: beta-galactosidase activity | 2.64E-03 |
| 38 | GO:0008266: poly(U) RNA binding | 2.87E-03 |
| 39 | GO:0030170: pyridoxal phosphate binding | 3.39E-03 |
| 40 | GO:0005528: FK506 binding | 3.57E-03 |
| 41 | GO:0051536: iron-sulfur cluster binding | 3.57E-03 |
| 42 | GO:0051087: chaperone binding | 3.82E-03 |
| 43 | GO:0004176: ATP-dependent peptidase activity | 4.08E-03 |
| 44 | GO:0022891: substrate-specific transmembrane transporter activity | 4.60E-03 |
| 45 | GO:0004812: aminoacyl-tRNA ligase activity | 5.15E-03 |
| 46 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 5.72E-03 |
| 47 | GO:0051015: actin filament binding | 7.24E-03 |
| 48 | GO:0008483: transaminase activity | 7.88E-03 |
| 49 | GO:0008237: metallopeptidase activity | 7.88E-03 |
| 50 | GO:0016168: chlorophyll binding | 8.88E-03 |
| 51 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 9.93E-03 |
| 52 | GO:0008236: serine-type peptidase activity | 9.93E-03 |
| 53 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.33E-02 |
| 54 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.54E-02 |
| 55 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.80E-02 |
| 56 | GO:0016887: ATPase activity | 1.85E-02 |
| 57 | GO:0051082: unfolded protein binding | 2.31E-02 |
| 58 | GO:0016758: transferase activity, transferring hexosyl groups | 2.66E-02 |
| 59 | GO:0004252: serine-type endopeptidase activity | 2.92E-02 |
| 60 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.24E-02 |
| 61 | GO:0042802: identical protein binding | 4.04E-02 |
| 62 | GO:0008168: methyltransferase activity | 4.52E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 1.19E-34 |
| 3 | GO:0009507: chloroplast | 4.96E-33 |
| 4 | GO:0009941: chloroplast envelope | 2.89E-30 |
| 5 | GO:0009579: thylakoid | 7.38E-17 |
| 6 | GO:0009534: chloroplast thylakoid | 1.03E-13 |
| 7 | GO:0005840: ribosome | 1.09E-13 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 1.24E-11 |
| 9 | GO:0031977: thylakoid lumen | 6.04E-08 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 8.20E-07 |
| 11 | GO:0010007: magnesium chelatase complex | 9.10E-07 |
| 12 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 6.42E-05 |
| 13 | GO:0009547: plastid ribosome | 6.42E-05 |
| 14 | GO:0000311: plastid large ribosomal subunit | 9.25E-05 |
| 15 | GO:0000312: plastid small ribosomal subunit | 1.23E-04 |
| 16 | GO:0009509: chromoplast | 2.63E-04 |
| 17 | GO:0032432: actin filament bundle | 3.82E-04 |
| 18 | GO:0031209: SCAR complex | 7.90E-04 |
| 19 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 7.90E-04 |
| 20 | GO:0005618: cell wall | 1.09E-03 |
| 21 | GO:0005884: actin filament | 2.21E-03 |
| 22 | GO:0016020: membrane | 2.21E-03 |
| 23 | GO:0009536: plastid | 2.58E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 2.87E-03 |
| 25 | GO:0009654: photosystem II oxygen evolving complex | 3.82E-03 |
| 26 | GO:0042651: thylakoid membrane | 3.82E-03 |
| 27 | GO:0015935: small ribosomal subunit | 4.08E-03 |
| 28 | GO:0022627: cytosolic small ribosomal subunit | 5.55E-03 |
| 29 | GO:0009523: photosystem II | 6.31E-03 |
| 30 | GO:0019898: extrinsic component of membrane | 6.31E-03 |
| 31 | GO:0009295: nucleoid | 7.88E-03 |
| 32 | GO:0010319: stromule | 7.88E-03 |
| 33 | GO:0031969: chloroplast membrane | 8.04E-03 |
| 34 | GO:0022626: cytosolic ribosome | 2.02E-02 |
| 35 | GO:0009706: chloroplast inner membrane | 2.31E-02 |
| 36 | GO:0010287: plastoglobule | 2.61E-02 |
| 37 | GO:0005759: mitochondrial matrix | 3.19E-02 |
| 38 | GO:0005802: trans-Golgi network | 3.39E-02 |
| 39 | GO:0005768: endosome | 3.85E-02 |
| 40 | GO:0046658: anchored component of plasma membrane | 4.16E-02 |